Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48507 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47523 * 300.00050 * 3 2 1 6 6 H 1.48502 * 109.47167 * 60.00207 * 3 2 1 7 7 C 1.39942 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 197.86595 * 7 2 1 9 9 C 1.41394 * 120.00131 * 17.86275 * 7 2 1 10 10 C 1.40720 * 120.24089 * 24.39010 * 9 7 2 11 11 C 1.37614 * 119.74136 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25190 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74798 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46796 * 90.00779 * 13 12 11 15 15 C 1.52994 * 109.47270 * 294.99798 * 14 13 12 16 16 C 1.53001 * 109.47270 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47120 * 59.99825 * 16 15 14 18 18 C 1.52994 * 109.47192 * 300.00222 * 17 16 15 19 19 C 1.53000 * 109.47120 * 174.99623 * 14 13 12 20 20 C 1.38635 * 120.49727 * 0.26471 * 12 11 10 21 21 C 1.37615 * 120.24967 * 359.43653 * 20 12 11 22 22 H 0.97005 * 120.00108 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.12549 * 359.97438 * 10 9 7 24 24 H 1.08002 * 119.87387 * 179.97438 * 11 10 9 25 25 H 1.08995 * 109.47886 * 330.00787 * 13 12 11 26 26 H 1.09008 * 109.46808 * 210.00300 * 13 12 11 27 27 H 1.09000 * 109.47076 * 55.00231 * 14 13 12 28 28 H 1.08996 * 109.47246 * 59.99799 * 15 14 13 29 29 H 1.08999 * 109.46838 * 299.99736 * 15 14 13 30 30 H 1.08998 * 109.47389 * 299.99991 * 16 15 14 31 31 H 1.09000 * 109.47468 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47338 * 60.00049 * 17 16 15 33 33 H 1.08998 * 109.47058 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47132 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47425 * 299.99650 * 18 17 16 36 36 H 1.08999 * 109.47338 * 60.00049 * 19 14 13 37 37 H 1.09001 * 109.47454 * 300.00117 * 19 14 13 38 38 H 1.08003 * 119.87116 * 179.69915 * 20 12 11 39 39 H 1.08005 * 120.13021 * 180.27501 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3767 10 6 0.2209 -2.3615 -1.2126 11 6 -0.4097 -3.5306 -1.5718 12 6 0.0650 -4.7498 -1.1130 13 6 -0.6347 -6.0231 -1.5130 14 6 -0.0190 -6.5583 -2.8074 15 6 -0.2892 -5.5731 -3.9462 16 6 0.3259 -6.1086 -5.2407 17 6 -0.2985 -7.4636 -5.5797 18 6 -0.0283 -8.4489 -4.4408 19 6 -0.6429 -7.9135 -3.1466 20 6 1.1749 -4.8058 -0.2842 21 6 1.8251 -3.6498 0.0829 22 1 -0.4850 0.8401 0.0004 23 1 -0.1512 -1.4128 -1.5700 24 1 -1.2783 -3.4983 -2.2129 25 1 -1.6942 -5.8214 -1.6710 26 1 -0.5199 -6.7646 -0.7223 27 1 1.0566 -6.6762 -2.6764 28 1 0.1552 -4.6076 -3.7046 29 1 -1.3649 -5.4553 -4.0772 30 1 1.4016 -6.2268 -5.1101 31 1 0.1330 -5.4069 -6.0522 32 1 -1.3742 -7.3455 -5.7103 33 1 0.1394 -7.8449 -6.5021 34 1 -0.4728 -9.4144 -4.6825 35 1 1.0474 -8.5671 -4.3101 36 1 -1.7186 -7.7958 -3.2776 37 1 -0.4504 -8.6155 -2.3353 38 1 1.5332 -5.7607 0.0712 39 1 2.6922 -3.6961 0.7250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260309075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = -28.809995 kcal Electronic energy + Delta-G solvation = -17289.795353 eV Core-core repulsion = 14773.718011 eV Total energy + Delta-G solvation = -2516.077342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -38.76932 -37.22488 -34.06148 -32.36477 -30.56852 -29.47870 -29.19674 -26.55900 -23.89772 -22.35279 -21.23558 -20.86495 -19.57939 -19.30961 -17.25055 -15.26769 -15.22669 -14.54927 -14.16498 -14.05834 -13.74106 -13.60122 -13.18360 -12.65054 -12.16299 -12.13937 -11.96925 -11.81192 -11.56729 -11.27382 -10.99337 -10.92560 -10.85119 -10.72043 -10.43172 -10.38467 -10.04372 -9.86221 -9.74325 -9.39777 -9.26918 -9.05396 -7.38503 -7.21053 -6.71709 -4.29333 2.79467 3.08746 3.11473 3.14586 3.23141 3.96128 4.62849 4.89490 4.96868 5.00298 5.42100 5.44412 5.65168 5.71088 5.73489 5.75750 5.82322 5.85597 6.05547 6.15373 6.20417 6.23360 6.32377 6.35949 6.42048 6.46704 6.55303 6.57111 6.62741 6.81455 6.88905 7.01261 7.12632 7.35375 7.43612 7.66820 7.93890 8.10561 8.19986 8.35575 8.69476 8.94831 9.03327 10.22927 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.039848 B = 0.004903 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.503483 B = 5709.991343 C = 5970.412474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.108 3.892 10 C -0.165 4.165 11 C -0.096 4.096 12 C -0.205 4.205 13 C -0.051 4.051 14 C -0.078 4.078 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.226 4.226 22 H 0.279 0.721 23 H 0.116 0.884 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.397 -9.419 -7.217 11.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.105 3.895 10 C -0.184 4.184 11 C -0.114 4.114 12 C -0.206 4.206 13 C -0.088 4.088 14 C -0.097 4.097 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.108 4.108 21 C -0.245 4.245 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.600 -9.253 -7.199 11.833 hybrid contribution 0.319 0.832 0.100 0.897 sum -1.281 -8.421 -7.099 11.088 Atomic orbital electron populations 1.69839 1.07561 1.28941 1.35790 1.25881 0.94678 1.01199 0.92310 0.86321 0.81051 0.81180 0.78504 1.18445 1.19749 1.20059 1.19602 0.98107 0.91364 1.40446 0.90584 1.17608 0.91230 0.91965 0.88663 1.21315 0.99354 0.96746 1.01025 1.20526 0.98522 0.92695 0.99659 1.19040 1.00899 0.93275 1.07375 1.20283 0.98022 0.95229 0.95301 1.21141 1.00031 0.93402 0.95099 1.21609 1.00206 0.99751 0.93502 1.21551 1.00144 0.96085 0.97953 1.21528 1.00613 0.95832 0.97560 1.21512 1.00808 0.97811 0.95428 1.21617 0.99900 0.97115 0.96634 1.20368 0.95903 0.96234 0.98329 1.20954 1.03642 0.93024 1.06901 0.91054 0.86606 0.89679 0.93077 0.93164 0.91610 0.90594 0.92796 0.92266 0.92567 0.92363 0.92764 0.92727 0.92253 0.92413 0.92499 0.89762 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 10.95 55.55 0.61 -20.27 16 2 C 0.08 1.95 5.14 -17.35 -0.09 1.86 16 3 Si 0.90 18.90 29.60 -169.99 -5.03 13.87 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.47 -12.57 9.05 -37.74 -0.34 -12.92 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.11 2.91 5.58 -106.82 -0.60 2.32 16 10 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 11 C -0.10 -2.21 7.92 -39.66 -0.31 -2.53 16 12 C -0.20 -4.41 4.74 -104.33 -0.49 -4.91 16 13 C -0.05 -0.89 4.83 -27.88 -0.13 -1.02 16 14 C -0.08 -1.19 2.18 -90.62 -0.20 -1.39 16 15 C -0.11 -1.73 4.76 -26.73 -0.13 -1.85 16 16 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 17 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 18 C -0.12 -1.33 5.92 -26.76 -0.16 -1.49 16 19 C -0.12 -1.45 5.20 -26.76 -0.14 -1.59 16 20 C -0.09 -2.04 9.67 -39.66 -0.38 -2.42 16 21 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 22 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 23 H 0.12 3.14 6.15 -52.49 -0.32 2.82 16 24 H 0.09 1.80 8.03 -52.49 -0.42 1.38 16 25 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.05 0.83 8.08 -51.92 -0.42 0.41 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.36 6.26 -51.93 -0.33 1.03 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -26.83 307.54 -10.33 -37.16 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.53 Total: 4.43 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: -4.01 Total: -39.83 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.83 -10.33 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.354 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds