Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48507 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47523 * 300.00050 * 3 2 1 6 6 H 1.48502 * 109.47167 * 60.00207 * 3 2 1 7 7 C 1.39942 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99737 * 197.86595 * 7 2 1 9 9 C 1.41394 * 120.00131 * 17.86275 * 7 2 1 10 10 C 1.40720 * 120.24089 * 24.39010 * 9 7 2 11 11 C 1.37614 * 119.74136 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.25190 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.74798 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46796 * 90.00779 * 13 12 11 15 15 C 1.52994 * 109.47270 * 294.99798 * 14 13 12 16 16 C 1.53001 * 109.47270 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47120 * 59.99825 * 16 15 14 18 18 C 1.52994 * 109.47192 * 300.00222 * 17 16 15 19 19 C 1.53000 * 109.47120 * 174.99623 * 14 13 12 20 20 C 1.38635 * 120.49727 * 0.26471 * 12 11 10 21 21 C 1.37615 * 120.24967 * 359.43653 * 20 12 11 22 22 H 0.97005 * 120.00108 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.12549 * 359.97438 * 10 9 7 24 24 H 1.08002 * 119.87387 * 179.97438 * 11 10 9 25 25 H 1.08995 * 109.47886 * 330.00787 * 13 12 11 26 26 H 1.09008 * 109.46808 * 210.00300 * 13 12 11 27 27 H 1.09000 * 109.47076 * 55.00231 * 14 13 12 28 28 H 1.08996 * 109.47246 * 59.99799 * 15 14 13 29 29 H 1.08999 * 109.46838 * 299.99736 * 15 14 13 30 30 H 1.08998 * 109.47389 * 299.99991 * 16 15 14 31 31 H 1.09000 * 109.47468 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47338 * 60.00049 * 17 16 15 33 33 H 1.08998 * 109.47058 * 179.97438 * 17 16 15 34 34 H 1.09005 * 109.47132 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.47425 * 299.99650 * 18 17 16 36 36 H 1.08999 * 109.47338 * 60.00049 * 19 14 13 37 37 H 1.09001 * 109.47454 * 300.00117 * 19 14 13 38 38 H 1.08003 * 119.87116 * 179.69915 * 20 12 11 39 39 H 1.08005 * 120.13021 * 180.27501 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2346 0.2864 9 6 1.3521 -2.4068 -0.3767 10 6 0.2209 -2.3615 -1.2126 11 6 -0.4097 -3.5306 -1.5718 12 6 0.0650 -4.7498 -1.1130 13 6 -0.6347 -6.0231 -1.5130 14 6 -0.0190 -6.5583 -2.8074 15 6 -0.2892 -5.5731 -3.9462 16 6 0.3259 -6.1086 -5.2407 17 6 -0.2985 -7.4636 -5.5797 18 6 -0.0283 -8.4489 -4.4408 19 6 -0.6429 -7.9135 -3.1466 20 6 1.1749 -4.8058 -0.2842 21 6 1.8251 -3.6498 0.0829 22 1 -0.4850 0.8401 0.0004 23 1 -0.1512 -1.4128 -1.5700 24 1 -1.2783 -3.4983 -2.2129 25 1 -1.6942 -5.8214 -1.6710 26 1 -0.5199 -6.7646 -0.7223 27 1 1.0566 -6.6762 -2.6764 28 1 0.1552 -4.6076 -3.7046 29 1 -1.3649 -5.4553 -4.0772 30 1 1.4016 -6.2268 -5.1101 31 1 0.1330 -5.4069 -6.0522 32 1 -1.3742 -7.3455 -5.7103 33 1 0.1394 -7.8449 -6.5021 34 1 -0.4728 -9.4144 -4.6825 35 1 1.0474 -8.5671 -4.3101 36 1 -1.7186 -7.7958 -3.2776 37 1 -0.4504 -8.6155 -2.3353 38 1 1.5332 -5.7607 0.0712 39 1 2.6922 -3.6961 0.7250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260309075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = -39.322770 kcal Electronic energy + Delta-G solvation = -17290.251221 eV Core-core repulsion = 14773.718011 eV Total energy + Delta-G solvation = -2516.533210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14186 -38.82434 -35.83819 -33.87477 -31.68944 -31.11307 -31.03271 -28.17399 -25.54201 -23.50764 -22.76714 -22.48007 -21.17937 -20.45375 -19.20671 -17.15285 -16.31975 -16.12668 -15.63966 -15.59846 -14.93495 -14.90028 -14.69138 -14.30350 -13.81256 -13.51825 -13.50900 -13.26770 -12.96392 -12.81648 -12.58179 -12.36394 -12.28003 -12.03834 -11.90383 -11.67195 -11.45368 -11.25424 -11.23410 -11.01857 -10.79169 -10.69274 -9.30926 -9.12509 -8.62097 -6.30665 0.98807 1.16097 1.36696 1.50188 1.52483 2.20804 2.73348 3.71144 3.87980 3.94075 4.01778 4.29297 4.33601 4.50026 4.51270 4.64625 4.67933 4.69220 4.74199 4.77876 4.88149 4.93048 5.05964 5.13250 5.17877 5.19926 5.24612 5.32523 5.37853 5.39705 5.45050 5.48530 5.52115 5.62812 5.70760 5.74801 6.04028 6.12941 6.31103 6.42352 6.73487 6.96632 7.07183 8.35082 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.039848 B = 0.004903 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.503483 B = 5709.991343 C = 5970.412474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.074 3.926 10 C -0.190 4.190 11 C -0.096 4.096 12 C -0.191 4.191 13 C -0.049 4.049 14 C -0.073 4.073 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.243 4.243 22 H 0.287 0.713 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 -11.061 -8.079 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.072 3.928 10 C -0.209 4.209 11 C -0.115 4.115 12 C -0.192 4.192 13 C -0.087 4.087 14 C -0.091 4.091 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.263 4.263 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.120 0.880 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.046 -10.916 -8.061 13.724 hybrid contribution 0.402 1.211 0.349 1.323 sum -1.644 -9.706 -7.712 12.505 Atomic orbital electron populations 1.69889 1.08997 1.30313 1.36365 1.26727 0.95470 1.04426 0.91258 0.85191 0.79387 0.76310 0.78988 1.18296 1.18830 1.18956 1.19831 0.98236 0.92778 1.42746 0.91072 1.17950 0.92184 0.93022 0.89690 1.21283 1.00252 0.97128 1.02271 1.20741 0.98739 0.92516 0.99478 1.19527 0.99943 0.94585 1.05108 1.20347 0.98076 0.93292 0.96940 1.21055 0.99276 0.95038 0.93772 1.21570 1.00341 0.98279 0.94883 1.21535 0.99744 0.97510 0.96850 1.21517 1.00877 0.94479 0.98333 1.21517 1.00762 0.98633 0.94514 1.21570 1.00094 0.95295 0.97805 1.20721 0.95830 0.96687 0.98028 1.21167 1.04259 0.93427 1.07419 0.90279 0.88485 0.87998 0.92225 0.91646 0.92913 0.93989 0.92330 0.92917 0.92152 0.91796 0.91177 0.90655 0.92489 0.91727 0.91537 0.86805 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.95 10.95 21.82 0.24 -44.71 16 2 C 0.04 1.85 5.14 85.26 0.44 2.28 16 3 Si 0.98 39.54 29.60 68.60 2.03 41.57 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.51 -28.56 9.05 23.46 0.21 -28.35 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 9 C 0.07 4.15 5.58 -21.29 -0.12 4.03 16 10 C -0.19 -10.34 8.70 22.73 0.20 -10.15 16 11 C -0.10 -4.53 7.92 22.22 0.18 -4.35 16 12 C -0.19 -8.07 4.74 -19.68 -0.09 -8.17 16 13 C -0.05 -1.60 4.83 29.85 0.14 -1.45 16 14 C -0.07 -2.07 2.18 -10.80 -0.02 -2.09 16 15 C -0.11 -3.31 4.76 30.59 0.15 -3.17 16 16 C -0.12 -2.90 5.92 30.59 0.18 -2.72 16 17 C -0.11 -2.23 5.92 30.59 0.18 -2.04 16 18 C -0.12 -2.22 5.92 30.57 0.18 -2.04 16 19 C -0.11 -2.40 5.20 30.58 0.16 -2.24 16 20 C -0.09 -4.23 9.67 22.22 0.21 -4.01 16 21 C -0.24 -12.45 9.80 22.73 0.22 -12.23 16 22 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 23 H 0.10 5.56 6.15 -2.91 -0.02 5.54 16 24 H 0.10 4.33 8.03 -2.91 -0.02 4.31 16 25 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 26 H 0.06 1.96 8.08 -2.38 -0.02 1.94 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.50 6.26 -2.39 -0.01 1.48 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -59.61 307.54 5.48 -54.13 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.99 Total: 25.70 kcal Atomic # 6 Polarization: -78.91 SS G_CDS: 2.22 Total: -76.69 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.24 Total: -44.71 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -59.61 5.48 -54.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260309075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.805 kcal (2) G-P(sol) polarization free energy of solvation -59.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds