Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30102 * 124.94374 * 2 1 4 4 C 1.35794 * 109.64450 * 179.97438 * 3 2 1 5 5 C 1.40541 * 106.92454 * 0.02562 * 4 3 2 6 6 C 1.38786 * 119.83635 * 180.02562 * 5 4 3 7 7 C 1.37892 * 119.69050 * 0.02562 * 6 5 4 8 8 C 1.38735 * 120.45068 * 359.97438 * 7 6 5 9 9 C 1.36637 * 120.67128 * 359.96826 * 8 7 6 10 10 C 1.50701 * 120.06189 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46883 * 265.06409 * 10 9 8 12 12 C 1.50698 * 109.47228 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00453 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99377 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47208 * 60.00302 * 16 14 12 18 18 H 1.48495 * 109.47392 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47221 * 300.00363 * 16 14 12 20 20 N 1.36037 * 124.94660 * 179.97438 * 2 1 3 21 21 C 1.46507 * 126.34910 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.47016 * 90.02291 * 1 2 3 23 23 H 1.09001 * 109.47099 * 210.02551 * 1 2 3 24 24 H 1.08997 * 109.46897 * 330.02364 * 1 2 3 25 25 H 1.08005 * 120.15549 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.78063 * 179.97438 * 7 6 5 27 27 H 1.08001 * 119.66455 * 180.02562 * 8 7 6 28 28 H 1.09000 * 109.46576 * 25.06019 * 10 9 8 29 29 H 1.08993 * 109.47593 * 145.06529 * 10 9 8 30 30 H 1.08998 * 109.46963 * 299.99972 * 11 10 9 31 31 H 1.08999 * 109.47328 * 59.99561 * 11 10 9 32 32 H 0.96998 * 119.99367 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47080 * 270.00438 * 21 20 2 34 34 H 1.09004 * 109.46661 * 30.00045 * 21 20 2 35 35 H 1.08995 * 109.46934 * 149.99855 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2522 1.0665 0.0000 4 6 3.5621 0.7082 0.0006 5 6 3.6019 -0.6967 0.0003 6 6 4.8249 -1.3528 0.0014 7 6 5.9931 -0.6200 0.0031 8 6 5.9532 0.7667 0.0033 9 6 4.7584 1.4297 0.0012 10 6 4.7311 2.9364 0.0009 11 6 4.5953 3.4443 1.4378 12 6 4.5686 4.9510 1.4376 13 1 4.6408 5.4922 0.5057 14 6 4.4509 5.6387 2.6269 15 7 4.3624 4.9795 3.7615 16 14 4.4171 7.5063 2.6265 17 1 3.2622 7.9804 1.8223 18 1 4.2854 7.9993 4.0211 19 1 5.6773 8.0241 2.0359 20 7 2.2863 -1.1151 0.0005 21 6 1.8165 -2.5028 0.0006 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 4.8616 -2.4322 0.0016 26 1 6.9456 -1.1291 0.0043 27 1 6.8759 1.3280 0.0043 28 1 5.6560 3.3164 -0.4329 29 1 3.8832 3.2844 -0.5891 30 1 3.6704 3.0642 1.8715 31 1 5.4431 3.0963 2.0278 32 1 4.2800 5.4633 4.5982 33 1 1.6995 -2.8467 1.0283 34 1 0.8571 -2.5615 -0.5136 35 1 2.5431 -3.1323 -0.5129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = 56.440794 kcal Electronic energy + Delta-G solvation = -16944.805846 eV Core-core repulsion = 14328.884912 eV Total energy + Delta-G solvation = -2615.920934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.84441 -37.43501 -34.32056 -33.46635 -31.78632 -31.16652 -28.70501 -27.30053 -26.80309 -24.71933 -21.89226 -21.69080 -20.48608 -19.08046 -17.02852 -16.54494 -16.03961 -15.80445 -15.03074 -14.37283 -14.08397 -13.49348 -13.41301 -13.15615 -12.94300 -12.62349 -12.44940 -12.30911 -12.16051 -11.48295 -11.34529 -11.14958 -10.79461 -10.73782 -10.51938 -10.01736 -9.62527 -9.54469 -9.26929 -8.92096 -8.21043 -7.92367 -7.45591 -5.86308 -3.88110 1.34577 1.93169 2.77096 3.09432 3.42259 3.45505 3.48813 4.29817 4.43395 4.57273 4.61186 4.72619 5.00077 5.19776 5.21494 5.34203 5.41232 5.46787 5.49047 5.66374 5.82377 5.87979 5.90425 6.15658 6.46052 6.54264 6.75389 6.86630 6.91415 7.11777 7.25417 7.33537 7.46635 7.83987 8.03276 8.16342 8.30387 8.56422 9.18569 9.74306 11.25045 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.005877 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.262961 B = 4763.584430 C = 5459.320908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.261 3.739 3 N -0.469 5.469 4 C 0.051 3.949 5 C 0.048 3.952 6 C -0.138 4.138 7 C -0.092 4.092 8 C -0.145 4.145 9 C 0.004 3.996 10 C -0.076 4.076 11 C 0.035 3.965 12 C -0.516 4.516 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.500 5.500 21 C 0.083 3.917 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -16.822 -8.338 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.004 4.004 3 N -0.188 5.188 4 C -0.067 4.067 5 C -0.060 4.060 6 C -0.160 4.160 7 C -0.111 4.111 8 C -0.166 4.166 9 C 0.003 3.997 10 C -0.113 4.113 11 C -0.002 4.002 12 C -0.554 4.554 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 N -0.193 5.193 21 C -0.059 4.059 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.115 0.885 25 H 0.131 0.869 26 H 0.142 0.858 27 H 0.145 0.855 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.814 -16.079 -8.143 18.656 hybrid contribution 0.240 0.003 0.229 0.332 sum -4.574 -16.076 -7.914 18.493 Atomic orbital electron populations 1.20294 0.84776 1.04393 1.03601 1.23604 0.95633 0.80719 1.00482 1.70436 1.01243 1.26774 1.20321 1.18847 0.91756 0.89720 1.06405 1.18848 0.85046 0.95367 1.06774 1.19697 0.89184 0.98543 1.08540 1.20805 0.96781 0.94005 0.99537 1.20560 0.97445 0.93879 1.04700 1.19416 0.89345 0.97552 0.93391 1.20789 1.01212 0.87291 1.02042 1.19007 0.97386 0.95208 0.88606 1.21228 1.49750 0.91766 0.92662 0.92717 1.25010 0.95522 0.98242 0.95665 1.69981 1.50710 1.35316 0.97604 0.86667 0.78556 0.86002 0.76812 1.20257 1.21395 1.20291 1.45068 1.04774 1.07040 1.62418 1.21849 1.01151 0.79947 1.02990 0.89901 0.90762 0.88524 0.86917 0.85823 0.85484 0.92351 0.91677 0.96121 0.96805 0.93120 0.91185 0.89811 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 9.95 36.01 0.36 -0.40 16 2 C 0.26 4.18 7.85 -154.83 -1.22 2.96 16 3 N -0.47 -9.80 11.27 -8.23 -0.09 -9.90 16 4 C 0.05 1.06 6.92 -84.70 -0.59 0.47 16 5 C 0.05 0.83 6.87 -83.99 -0.58 0.25 16 6 C -0.14 -2.07 10.05 -39.51 -0.40 -2.47 16 7 C -0.09 -1.38 10.03 -39.52 -0.40 -1.77 16 8 C -0.15 -2.59 9.59 -39.98 -0.38 -2.98 16 9 C 0.00 0.09 5.13 -104.65 -0.54 -0.45 16 10 C -0.08 -1.78 5.29 -27.88 -0.15 -1.93 16 11 C 0.03 0.99 4.95 -27.88 -0.14 0.85 16 12 C -0.52 -15.50 9.11 -34.44 -0.31 -15.81 16 13 H 0.05 1.58 7.74 -52.48 -0.41 1.18 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.90 -28.35 13.29 55.43 0.74 -27.61 16 16 Si 0.89 22.58 29.54 -169.99 -5.02 17.56 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 N -0.50 -7.26 3.21 -118.50 -0.38 -7.64 16 21 C 0.08 0.71 10.76 59.85 0.64 1.36 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.56 7.65 -51.93 -0.40 0.17 16 24 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 26 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.13 2.06 8.05 -52.49 -0.42 1.64 16 28 H 0.06 1.27 8.04 -51.93 -0.42 0.86 16 29 H 0.06 1.57 8.12 -51.93 -0.42 1.15 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.50 7.62 -51.93 -0.40 0.11 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 301.09 15.07 4.54 4.54 Total: -1.00 -36.33 301.09 -8.99 -45.31 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.98 Total: -3.95 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -3.79 Total: -18.31 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.26 Total: -45.14 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.33 -8.99 -45.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.753 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds