Wall clock time and date at job start Mon Mar 30 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30102 * 124.94374 * 2 1 4 4 C 1.35794 * 109.64450 * 179.97438 * 3 2 1 5 5 C 1.40541 * 106.92454 * 0.02562 * 4 3 2 6 6 C 1.38786 * 119.83635 * 180.02562 * 5 4 3 7 7 C 1.37892 * 119.69050 * 0.02562 * 6 5 4 8 8 C 1.38735 * 120.45068 * 359.97438 * 7 6 5 9 9 C 1.36637 * 120.67128 * 359.96826 * 8 7 6 10 10 C 1.50701 * 120.06189 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46883 * 265.06409 * 10 9 8 12 12 C 1.50698 * 109.47228 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99477 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00453 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99377 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47208 * 60.00302 * 16 14 12 18 18 H 1.48495 * 109.47392 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47221 * 300.00363 * 16 14 12 20 20 N 1.36037 * 124.94660 * 179.97438 * 2 1 3 21 21 C 1.46507 * 126.34910 * 0.02562 * 20 2 1 22 22 H 1.08998 * 109.47016 * 90.02291 * 1 2 3 23 23 H 1.09001 * 109.47099 * 210.02551 * 1 2 3 24 24 H 1.08997 * 109.46897 * 330.02364 * 1 2 3 25 25 H 1.08005 * 120.15549 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.78063 * 179.97438 * 7 6 5 27 27 H 1.08001 * 119.66455 * 180.02562 * 8 7 6 28 28 H 1.09000 * 109.46576 * 25.06019 * 10 9 8 29 29 H 1.08993 * 109.47593 * 145.06529 * 10 9 8 30 30 H 1.08998 * 109.46963 * 299.99972 * 11 10 9 31 31 H 1.08999 * 109.47328 * 59.99561 * 11 10 9 32 32 H 0.96998 * 119.99367 * 179.97438 * 15 14 12 33 33 H 1.08997 * 109.47080 * 270.00438 * 21 20 2 34 34 H 1.09004 * 109.46661 * 30.00045 * 21 20 2 35 35 H 1.08995 * 109.46934 * 149.99855 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2522 1.0665 0.0000 4 6 3.5621 0.7082 0.0006 5 6 3.6019 -0.6967 0.0003 6 6 4.8249 -1.3528 0.0014 7 6 5.9931 -0.6200 0.0031 8 6 5.9532 0.7667 0.0033 9 6 4.7584 1.4297 0.0012 10 6 4.7311 2.9364 0.0009 11 6 4.5953 3.4443 1.4378 12 6 4.5686 4.9510 1.4376 13 1 4.6408 5.4922 0.5057 14 6 4.4509 5.6387 2.6269 15 7 4.3624 4.9795 3.7615 16 14 4.4171 7.5063 2.6265 17 1 3.2622 7.9804 1.8223 18 1 4.2854 7.9993 4.0211 19 1 5.6773 8.0241 2.0359 20 7 2.2863 -1.1151 0.0005 21 6 1.8165 -2.5028 0.0006 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 4.8616 -2.4322 0.0016 26 1 6.9456 -1.1291 0.0043 27 1 6.8759 1.3280 0.0043 28 1 5.6560 3.3164 -0.4329 29 1 3.8832 3.2844 -0.5891 30 1 3.6704 3.0642 1.8715 31 1 5.4431 3.0963 2.0278 32 1 4.2800 5.4633 4.5982 33 1 1.6995 -2.8467 1.0283 34 1 0.8571 -2.5615 -0.5136 35 1 2.5431 -3.1323 -0.5129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317927.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:07 Heat of formation + Delta-G solvation = 33.567136 kcal Electronic energy + Delta-G solvation = -16945.797722 eV Core-core repulsion = 14328.884912 eV Total energy + Delta-G solvation = -2616.912810 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.06977 -38.76595 -35.97038 -35.06560 -33.63908 -32.24320 -30.43759 -28.52538 -27.71902 -26.72176 -23.53593 -23.15621 -21.95746 -20.39642 -18.56535 -18.23584 -17.54513 -16.91128 -16.51520 -16.29090 -15.41775 -14.87308 -14.40684 -14.37073 -14.18952 -14.12280 -13.87381 -13.64436 -13.21307 -13.15177 -12.86524 -12.73108 -12.65483 -12.28327 -12.16759 -11.77873 -11.63276 -11.31504 -11.00379 -10.70666 -10.56147 -9.18024 -8.83038 -8.19268 -6.32495 0.07041 0.60873 1.37794 1.43308 1.51031 1.75030 1.87838 2.41017 2.94099 3.12154 3.33843 3.59897 3.89882 4.11904 4.13807 4.39170 4.43153 4.45509 4.52189 4.61200 4.65848 4.70816 4.83093 4.83415 4.92737 5.02310 5.13993 5.31149 5.44324 5.52353 5.55542 5.60689 5.82528 5.90061 6.07434 6.22771 6.32762 6.82834 7.05237 7.36146 8.92597 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.005877 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.262961 B = 4763.584430 C = 5459.320908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.265 3.735 3 N -0.543 5.543 4 C 0.011 3.989 5 C 0.034 3.966 6 C -0.120 4.120 7 C -0.093 4.093 8 C -0.145 4.145 9 C -0.048 4.048 10 C -0.057 4.057 11 C 0.050 3.950 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.262 1.262 20 N -0.494 5.494 21 C 0.072 3.928 22 H 0.107 0.893 23 H 0.112 0.888 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.168 0.832 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.044 0.956 30 H -0.024 1.024 31 H -0.012 1.012 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -18.868 -9.059 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.000 4.000 3 N -0.264 5.264 4 C -0.106 4.106 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.112 4.112 8 C -0.165 4.165 9 C -0.049 4.049 10 C -0.094 4.094 11 C 0.013 3.987 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.186 1.186 20 N -0.186 5.186 21 C -0.068 4.068 22 H 0.125 0.875 23 H 0.130 0.870 24 H 0.102 0.898 25 H 0.175 0.825 26 H 0.185 0.815 27 H 0.153 0.847 28 H 0.086 0.914 29 H 0.063 0.937 30 H -0.005 1.005 31 H 0.006 0.994 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.010 -18.175 -8.881 20.839 hybrid contribution 0.228 0.484 0.462 0.707 sum -4.782 -17.691 -8.419 20.167 Atomic orbital electron populations 1.20533 0.81164 1.05593 1.05503 1.24524 0.97484 0.80414 0.97621 1.70361 1.02148 1.29953 1.23938 1.19179 0.91814 0.92025 1.07630 1.19173 0.87177 0.94158 1.07043 1.20246 0.87887 1.00690 1.05288 1.21244 0.98910 0.92595 0.98472 1.20812 0.96449 0.95751 1.03470 1.19336 0.91375 0.95877 0.98333 1.20405 1.00555 0.90191 0.98273 1.18744 0.93852 0.94834 0.91261 1.21652 1.50447 0.92811 0.93342 0.92151 1.26069 0.94437 1.04491 0.94925 1.70138 1.51154 1.37880 0.98440 0.85404 0.79336 0.78350 0.77358 1.19293 1.20443 1.18634 1.45399 1.03446 1.08906 1.60803 1.22335 1.03124 0.76669 1.04697 0.87477 0.86996 0.89802 0.82457 0.81483 0.84728 0.91439 0.93715 1.00525 0.99366 0.92742 0.89785 0.86765 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 9.95 71.24 0.71 -0.65 16 2 C 0.27 8.47 7.85 137.93 1.08 9.55 16 3 N -0.54 -24.06 11.27 -179.96 -2.03 -26.08 16 4 C 0.01 0.48 6.92 39.45 0.27 0.76 16 5 C 0.03 1.15 6.87 38.86 0.27 1.41 16 6 C -0.12 -3.25 10.05 22.32 0.22 -3.03 16 7 C -0.09 -2.58 10.03 22.31 0.22 -2.35 16 8 C -0.14 -5.23 9.59 22.01 0.21 -5.02 16 9 C -0.05 -2.14 5.13 -19.88 -0.10 -2.24 16 10 C -0.06 -2.88 5.29 29.85 0.16 -2.72 16 11 C 0.05 3.07 4.95 29.85 0.15 3.21 16 12 C -0.54 -34.29 9.11 25.60 0.23 -34.06 16 13 H 0.06 3.63 7.74 -2.91 -0.02 3.60 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.94 -61.34 13.29 21.45 0.28 -61.05 16 16 Si 0.97 47.15 29.54 68.60 2.03 49.18 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 20 N -0.49 -13.44 3.21 -528.83 -1.70 -15.13 16 21 C 0.07 0.93 10.76 127.77 1.37 2.31 16 22 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.11 1.31 7.65 -2.39 -0.02 1.29 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 26 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.13 4.45 8.05 -2.91 -0.02 4.43 16 28 H 0.07 3.15 8.04 -2.39 -0.02 3.13 16 29 H 0.04 2.36 8.12 -2.39 -0.02 2.34 16 30 H -0.02 -1.63 8.14 -2.39 -0.02 -1.65 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.26 16.10 8.31 -92.71 -0.77 15.32 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.81 7.62 -2.38 -0.02 0.79 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -86.37 301.09 4.92 -81.45 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.07 Total: 4.13 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 5.27 Total: -32.49 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.44 Total: -102.27 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -86.37 4.92 -81.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317927.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.018 kcal (2) G-P(sol) polarization free energy of solvation -86.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds