Wall clock time and date at job start Mon Mar 30 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.35099 * 125.69021 * 84.99587 * 4 2 1 6 6 N 1.36830 * 107.18119 * 180.02562 * 5 4 2 7 7 C 1.36493 * 132.56696 * 179.97438 * 6 5 4 8 8 C 1.34948 * 120.60458 * 179.97438 * 7 6 5 9 9 C 1.40470 * 120.30505 * 0.03768 * 8 7 6 10 10 C 1.50703 * 120.15509 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47426 * 270.02848 * 10 9 8 12 12 H 1.08004 * 119.99841 * 359.97438 * 11 10 9 13 13 C 1.37870 * 119.99998 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00335 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47132 * 119.99674 * 15 13 11 18 18 H 1.48497 * 109.47203 * 240.00199 * 15 13 11 19 19 C 1.36019 * 119.69115 * 359.97438 * 9 8 7 20 20 C 1.37076 * 106.99976 * 0.02562 * 6 5 4 21 21 N 1.32559 * 108.03471 * 359.73789 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08006 * 126.40714 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.69568 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.84898 * 180.02562 * 8 7 6 32 32 H 1.09006 * 109.46883 * 30.02617 * 10 9 8 33 33 H 1.08998 * 109.46891 * 150.02262 * 10 9 8 34 34 H 0.96998 * 120.00267 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.33359 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.2049 -0.1511 -2.4482 6 7 2.6726 -1.1312 -3.2806 7 6 3.0159 -1.1345 -4.6016 8 6 3.4599 -2.2632 -5.1933 9 6 3.5740 -3.4528 -4.4550 10 6 4.0698 -4.7114 -5.1193 11 6 2.9005 -5.4736 -5.6875 12 1 1.8985 -5.0856 -5.5782 13 6 3.1098 -6.6666 -6.3460 14 7 4.3298 -7.1394 -6.4787 15 14 1.6603 -7.6118 -7.0498 16 1 0.4036 -6.8725 -6.7681 17 1 1.8306 -7.7582 -8.5178 18 1 1.5943 -8.9561 -6.4225 19 6 3.2351 -3.4634 -3.1378 20 6 2.7723 -2.2768 -2.5344 21 7 2.3852 -1.9962 -1.2980 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 2.0100 0.8773 -2.7148 30 1 2.9313 -0.2255 -5.1787 31 1 3.7286 -2.2519 -6.2393 32 1 4.7588 -4.4510 -5.9228 33 1 4.5851 -5.3308 -4.3852 34 1 4.4770 -7.9786 -6.9423 35 1 3.3192 -4.3721 -2.5602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260359316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:09 Heat of formation + Delta-G solvation = 62.949196 kcal Electronic energy + Delta-G solvation = -16693.817271 eV Core-core repulsion = 14078.178563 eV Total energy + Delta-G solvation = -2615.638708 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.36383 -37.63024 -35.18736 -33.72108 -32.54701 -29.57007 -29.32255 -27.26952 -26.58481 -23.82947 -23.19195 -22.20499 -20.61942 -19.27774 -17.44332 -16.42894 -16.01442 -15.47751 -15.09088 -14.54470 -14.32148 -14.10037 -13.86160 -13.40807 -13.12827 -12.47554 -12.23123 -11.91233 -11.67643 -11.42583 -11.33467 -11.19236 -10.96521 -10.80441 -10.70133 -10.60796 -10.31572 -9.75804 -9.61831 -9.28156 -8.50795 -8.24679 -7.23111 -6.12339 -4.17305 1.31945 1.83098 3.04327 3.19947 3.25561 3.33781 3.38573 4.10719 4.40199 4.46011 4.73323 4.95715 5.12404 5.17701 5.21314 5.24153 5.52304 5.55746 5.60642 5.70672 5.76893 5.78142 5.85904 5.99744 6.07159 6.25507 6.33405 6.47793 6.64124 6.85372 6.99899 7.11448 7.41437 7.52403 7.63727 7.82642 8.18813 8.33603 8.87616 9.47523 10.97171 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.040212 B = 0.004733 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.146811 B = 5913.933487 C = 6163.914731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.142 4.142 4 C 0.062 3.938 5 C -0.122 4.122 6 N -0.362 5.362 7 C 0.030 3.970 8 C -0.117 4.117 9 C -0.017 4.017 10 C 0.051 3.949 11 C -0.515 4.515 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.111 4.111 20 C 0.245 3.755 21 N -0.510 5.510 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.171 0.829 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 15.410 6.980 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.071 4.071 5 C -0.252 4.252 6 N -0.033 5.033 7 C -0.092 4.092 8 C -0.137 4.137 9 C -0.023 4.023 10 C 0.014 3.986 11 C -0.554 4.554 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.131 4.131 20 C 0.002 3.998 21 N -0.230 5.230 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.188 0.812 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.618 14.790 7.549 16.995 hybrid contribution -0.742 0.020 -1.272 1.473 sum -4.360 14.810 6.277 16.666 Atomic orbital electron populations 1.21793 0.94261 1.02235 1.01457 1.19418 0.95418 0.94538 0.93938 1.21830 1.01271 0.95166 1.01718 1.20635 1.01533 0.90770 0.94203 1.22059 1.16894 0.95114 0.91167 1.42724 1.41252 1.10862 1.08464 1.21483 1.04034 1.00983 0.82693 1.20973 1.00287 0.91212 1.01255 1.20600 0.92813 0.96692 0.92186 1.18372 0.96798 0.87672 0.95747 1.21044 0.92879 1.05523 1.35923 0.92345 1.24989 0.95877 0.97287 0.95971 1.69953 1.19905 1.20762 1.42403 0.86464 0.82601 0.79874 0.78706 1.19666 1.20880 1.20809 1.20126 1.03179 0.94693 0.95106 1.21069 1.03189 0.88238 0.87319 1.70610 1.21641 1.14614 1.16157 0.92390 0.92350 0.92735 0.89835 0.92247 0.92505 0.92582 0.81222 0.82767 0.83314 0.94733 0.94638 0.92736 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 37.16 0.34 -1.17 16 2 C -0.01 -0.16 3.37 -91.77 -0.31 -0.47 16 3 C -0.14 -1.33 8.77 37.16 0.33 -1.01 16 4 C 0.06 1.00 5.99 -82.97 -0.50 0.50 16 5 C -0.12 -1.85 10.90 -16.44 -0.18 -2.02 16 6 N -0.36 -6.27 2.94 -62.66 -0.18 -6.46 16 7 C 0.03 0.46 10.95 -16.65 -0.18 0.28 16 8 C -0.12 -2.02 9.67 -39.91 -0.39 -2.40 16 9 C -0.02 -0.35 5.07 -104.58 -0.53 -0.88 16 10 C 0.05 1.24 5.11 -29.04 -0.15 1.09 16 11 C -0.52 -13.89 9.09 -34.45 -0.31 -14.20 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 15 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.11 -2.28 9.75 -39.36 -0.38 -2.67 16 20 C 0.24 4.89 7.81 -156.04 -1.22 3.67 16 21 N -0.51 -10.06 11.32 -9.01 -0.10 -10.16 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.48 7.25 -51.93 -0.38 0.10 16 29 H 0.17 1.96 7.34 -52.48 -0.39 1.57 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 299.36 15.07 4.51 4.51 Total: -1.00 -30.69 299.36 -8.59 -39.27 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.95 Total: -0.72 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.58 Total: -17.71 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.45 Total: -41.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.69 -8.59 -39.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260359316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.222 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds