Wall clock time and date at job start Mon Mar 30 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.35099 * 125.69021 * 84.99587 * 4 2 1 6 6 N 1.36830 * 107.18119 * 180.02562 * 5 4 2 7 7 C 1.36493 * 132.56696 * 179.97438 * 6 5 4 8 8 C 1.34948 * 120.60458 * 179.97438 * 7 6 5 9 9 C 1.40470 * 120.30505 * 0.03768 * 8 7 6 10 10 C 1.50703 * 120.15509 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47426 * 270.02848 * 10 9 8 12 12 H 1.08004 * 119.99841 * 359.97438 * 11 10 9 13 13 C 1.37870 * 119.99998 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00335 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00066 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46958 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47132 * 119.99674 * 15 13 11 18 18 H 1.48497 * 109.47203 * 240.00199 * 15 13 11 19 19 C 1.36019 * 119.69115 * 359.97438 * 9 8 7 20 20 C 1.37076 * 106.99976 * 0.02562 * 6 5 4 21 21 N 1.32559 * 108.03471 * 359.73789 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.08006 * 126.40714 * 0.02562 * 5 4 2 30 30 H 1.08001 * 119.69568 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.84898 * 180.02562 * 8 7 6 32 32 H 1.09006 * 109.46883 * 30.02617 * 10 9 8 33 33 H 1.08998 * 109.46891 * 150.02262 * 10 9 8 34 34 H 0.96998 * 120.00267 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.33359 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.2049 -0.1511 -2.4482 6 7 2.6726 -1.1312 -3.2806 7 6 3.0159 -1.1345 -4.6016 8 6 3.4599 -2.2632 -5.1933 9 6 3.5740 -3.4528 -4.4550 10 6 4.0698 -4.7114 -5.1193 11 6 2.9005 -5.4736 -5.6875 12 1 1.8985 -5.0856 -5.5782 13 6 3.1098 -6.6666 -6.3460 14 7 4.3298 -7.1394 -6.4787 15 14 1.6603 -7.6118 -7.0498 16 1 0.4036 -6.8725 -6.7681 17 1 1.8306 -7.7582 -8.5178 18 1 1.5943 -8.9561 -6.4225 19 6 3.2351 -3.4634 -3.1378 20 6 2.7723 -2.2768 -2.5344 21 7 2.3852 -1.9962 -1.2980 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 2.0100 0.8773 -2.7148 30 1 2.9313 -0.2255 -5.1787 31 1 3.7286 -2.2519 -6.2393 32 1 4.7588 -4.4510 -5.9228 33 1 4.5851 -5.3308 -4.3852 34 1 4.4770 -7.9786 -6.9423 35 1 3.3192 -4.3721 -2.5602 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260359316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:06 Heat of formation + Delta-G solvation = 46.989041 kcal Electronic energy + Delta-G solvation = -16694.509356 eV Core-core repulsion = 14078.178563 eV Total energy + Delta-G solvation = -2616.330792 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -43.70068 -38.98735 -36.40081 -35.24020 -34.35671 -31.19028 -30.71329 -28.43812 -27.82120 -25.50723 -24.57865 -23.44430 -22.17328 -20.42641 -18.75945 -18.53938 -17.42564 -16.81556 -16.70171 -16.01052 -15.61364 -15.19408 -14.99046 -14.72580 -14.47711 -13.99448 -13.60662 -13.44062 -12.96772 -12.89022 -12.60350 -12.54257 -12.42395 -12.26674 -11.98279 -11.94059 -11.76698 -11.65562 -11.13928 -10.95828 -10.62274 -9.56583 -8.65457 -8.20513 -6.35285 -0.05447 0.41048 1.39110 1.41106 1.53230 1.76891 1.95005 2.37854 2.67657 3.09257 3.25124 3.54574 3.87533 3.98228 4.15354 4.27730 4.31726 4.33646 4.48728 4.61334 4.72337 4.87548 5.01808 5.02520 5.08034 5.12526 5.16402 5.22041 5.31904 5.41514 5.45757 5.63063 5.71250 5.75923 5.83978 6.11959 6.24375 6.76363 7.00625 7.33542 8.87135 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.040212 B = 0.004733 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.146811 B = 5913.933487 C = 6163.914731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.015 4.015 3 C -0.135 4.135 4 C 0.045 3.955 5 C -0.102 4.102 6 N -0.367 5.367 7 C 0.058 3.942 8 C -0.138 4.138 9 C -0.029 4.029 10 C 0.059 3.941 11 C -0.529 4.529 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.272 1.272 18 H -0.279 1.279 19 C -0.130 4.130 20 C 0.214 3.786 21 N -0.543 5.543 22 H 0.083 0.917 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.217 0.783 30 H 0.211 0.789 31 H 0.168 0.832 32 H 0.023 0.977 33 H 0.006 0.994 34 H 0.267 0.733 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 18.572 6.543 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 C -0.193 4.193 4 C -0.087 4.087 5 C -0.232 4.232 6 N -0.038 5.038 7 C -0.063 4.063 8 C -0.158 4.158 9 C -0.035 4.035 10 C 0.022 3.978 11 C -0.567 4.567 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.205 1.205 19 C -0.150 4.150 20 C -0.029 4.029 21 N -0.265 5.265 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.228 0.772 31 H 0.185 0.815 32 H 0.041 0.959 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.234 17.964 7.120 20.020 hybrid contribution -0.248 -0.866 -1.014 1.357 sum -5.483 17.097 6.106 18.965 Atomic orbital electron populations 1.21767 0.93132 1.01189 1.03178 1.19590 0.96274 0.95896 0.91714 1.21801 1.00827 0.93064 1.03607 1.21421 1.01225 0.89720 0.96355 1.22838 1.14033 0.96181 0.90151 1.43011 1.41091 1.10479 1.09252 1.22192 1.00250 1.01980 0.81842 1.21067 1.02038 0.90612 1.02068 1.20306 0.94004 0.96720 0.92428 1.18110 0.95847 0.89138 0.94681 1.21326 0.93297 1.06164 1.35937 0.92881 1.25836 0.98523 0.98227 0.96310 1.70061 1.21901 1.21348 1.43276 0.85428 0.79236 0.78271 0.78305 1.19258 1.19743 1.20508 1.19943 1.04799 0.95018 0.95274 1.20873 1.04978 0.88934 0.88140 1.70569 1.22312 1.17017 1.16562 0.89807 0.94777 0.91863 0.91063 0.90111 0.93171 0.91000 0.76627 0.77206 0.81503 0.95871 0.97597 0.92446 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.18 71.98 0.66 -1.92 16 2 C -0.02 -0.34 3.37 -11.54 -0.04 -0.37 16 3 C -0.14 -2.02 8.77 71.98 0.63 -1.39 16 4 C 0.05 1.38 5.99 41.58 0.25 1.63 16 5 C -0.10 -2.73 10.90 83.19 0.91 -1.82 16 6 N -0.37 -11.85 2.94 -352.16 -1.04 -12.89 16 7 C 0.06 1.60 10.95 83.21 0.91 2.51 16 8 C -0.14 -4.61 9.67 22.06 0.21 -4.40 16 9 C -0.03 -1.23 5.07 -19.84 -0.10 -1.33 16 10 C 0.06 3.05 5.11 29.10 0.15 3.20 16 11 C -0.53 -29.48 9.09 25.60 0.23 -29.24 16 12 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 13 C 0.01 0.55 5.46 84.65 0.46 1.01 16 14 N -0.93 -54.45 13.29 21.44 0.28 -54.16 16 15 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C -0.13 -5.67 9.75 22.41 0.22 -5.45 16 20 C 0.21 8.64 7.81 134.11 1.05 9.69 16 21 N -0.54 -21.66 11.32 -182.40 -2.06 -23.72 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 23 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.85 7.25 -2.39 -0.02 0.84 16 29 H 0.22 3.61 7.34 -2.91 -0.02 3.59 16 30 H 0.21 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.17 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.02 1.21 8.10 -2.38 -0.02 1.19 16 33 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.13 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -69.81 299.36 5.81 -64.00 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.06 Total: 8.95 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 5.54 Total: -27.90 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -2.82 Total: -90.78 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.81 5.81 -64.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260359316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.988 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds