Wall clock time and date at job start Mon Mar 30 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.92379 * 2 1 4 4 C 1.38335 * 120.30182 * 179.76378 * 3 2 1 5 5 C 1.50707 * 119.92548 * 180.28162 * 4 3 2 6 6 H 1.09009 * 109.46684 * 340.22811 * 5 4 3 7 7 N 1.46899 * 109.47085 * 220.23691 * 5 4 3 8 8 C 1.52991 * 109.47332 * 100.23049 * 5 4 3 9 9 C 1.50700 * 109.47412 * 184.99995 * 8 5 4 10 10 H 1.07995 * 119.99554 * 0.02562 * 9 8 5 11 11 C 1.37871 * 120.00407 * 180.02562 * 9 8 5 12 12 N 1.31516 * 119.99728 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00134 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47313 * 90.00206 * 13 11 9 15 15 H 1.48510 * 109.47140 * 209.99813 * 13 11 9 16 16 H 1.48500 * 109.47302 * 330.00086 * 13 11 9 17 17 C 1.37969 * 120.15419 * 0.51564 * 4 3 2 18 18 C 1.39608 * 119.84368 * 359.74401 * 17 4 3 19 19 C 1.43207 * 120.14972 * 180.02562 * 18 17 4 20 20 N 4.80110 * 134.70523 * 180.27143 * 2 1 3 21 21 C 1.37926 * 119.92136 * 180.27975 * 2 1 3 22 22 C 1.50695 * 120.07956 * 359.95107 * 21 2 1 23 23 H 1.09002 * 109.47152 * 269.72196 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.72297 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.72278 * 1 2 3 26 26 H 1.07996 * 119.84713 * 0.02562 * 3 2 1 27 27 H 1.00904 * 111.00204 * 176.04418 * 7 5 4 28 28 H 1.00904 * 111.00130 * 299.99631 * 7 5 4 29 29 H 1.08998 * 109.47066 * 305.00508 * 8 5 4 30 30 H 1.09010 * 109.47019 * 65.00063 * 8 5 4 31 31 H 0.97005 * 119.99632 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.07678 * 179.76613 * 17 4 3 33 33 H 1.09006 * 109.46732 * 90.00183 * 22 21 2 34 34 H 1.09002 * 109.47132 * 209.99931 * 22 21 2 35 35 H 1.09001 * 109.47335 * 330.00701 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5807 1.2085 0.0049 5 6 4.3239 2.5196 0.0113 6 1 3.6628 3.3136 -0.3364 7 7 5.4882 2.4267 -0.8795 8 6 4.7932 2.8329 1.4333 9 6 5.4280 4.1993 1.4633 10 1 5.4901 4.7858 0.5585 11 6 5.9296 4.7008 2.6456 12 7 5.8544 3.9863 3.7472 13 14 6.7158 6.3948 2.6828 14 1 5.6785 7.4156 2.9786 15 1 7.7616 6.4321 3.7365 16 1 7.3322 6.6835 1.3630 17 6 4.2816 0.0201 -0.0009 18 6 3.5916 -1.1935 -0.0063 19 6 4.3125 -2.4308 -0.0118 20 7 4.8844 -3.4123 -0.0162 21 6 2.1950 -1.1954 -0.0058 22 6 1.4416 -2.5005 -0.0111 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3633 -0.8875 -0.5181 25 1 -0.3633 0.8925 -0.5095 26 1 1.6536 2.1325 0.0004 27 1 5.9667 3.3128 -0.9428 28 1 6.1168 1.6971 -0.5782 29 1 3.9391 2.8141 2.1103 30 1 5.5226 2.0864 1.7480 31 1 6.2070 4.3393 4.5791 32 1 5.3616 0.0288 -0.0008 33 1 1.2592 -2.8105 -1.0401 34 1 2.0311 -3.2624 0.4989 35 1 0.4895 -2.3724 0.5039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:33 Heat of formation + Delta-G solvation = 10.938205 kcal Electronic energy + Delta-G solvation = -16708.435862 eV Core-core repulsion = 14090.541788 eV Total energy + Delta-G solvation = -2617.894074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99835 -37.95533 -37.20711 -34.77031 -33.53153 -32.97628 -29.94911 -28.91732 -27.42331 -25.79134 -24.49922 -22.95977 -20.51108 -19.22013 -18.35793 -17.30961 -16.80740 -16.59507 -15.79776 -15.54561 -15.04893 -14.62273 -14.45252 -14.36610 -14.14540 -14.02291 -13.90717 -13.53505 -13.47738 -13.41710 -12.88579 -12.81129 -12.59193 -12.44777 -12.28989 -12.01006 -11.93309 -11.69216 -11.13952 -10.59475 -9.74346 -9.54230 -9.19663 -8.19983 -6.31565 -0.16801 0.40577 1.41807 1.42497 1.52807 1.56254 1.92007 2.40551 2.83842 2.87409 3.13989 3.73264 3.85268 3.89749 4.15477 4.28760 4.41308 4.53327 4.61273 4.71596 4.78857 4.84246 4.94059 4.98745 5.01502 5.20679 5.30675 5.37249 5.42858 5.46651 5.57794 5.75413 5.78266 5.95764 6.17749 6.38961 6.41656 6.71642 6.85679 7.38690 8.90971 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.005400 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.046944 B = 5183.720281 C = 5597.108709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.085 4.085 4 C -0.074 4.074 5 C 0.139 3.861 6 H 0.081 0.919 7 N -0.831 5.831 8 C 0.009 3.991 9 C -0.534 4.534 10 H 0.068 0.932 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.961 3.039 14 H -0.274 1.274 15 H -0.290 1.290 16 H -0.260 1.260 17 C -0.070 4.070 18 C -0.047 4.047 19 C 0.283 3.717 20 N -0.461 5.461 21 C -0.046 4.046 22 C -0.119 4.119 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.346 0.654 28 H 0.332 0.668 29 H -0.008 1.008 30 H -0.010 1.010 31 H 0.261 0.739 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 -6.866 -8.409 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.104 4.104 4 C -0.074 4.074 5 C 0.027 3.973 6 H 0.100 0.900 7 N -0.359 5.359 8 C -0.030 4.030 9 C -0.572 4.572 10 H 0.086 0.914 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.786 3.214 14 H -0.200 1.200 15 H -0.216 1.216 16 H -0.184 1.184 17 C -0.091 4.091 18 C -0.050 4.050 19 C -0.031 4.031 20 N -0.137 5.137 21 C -0.049 4.049 22 C -0.175 4.175 23 H 0.100 0.900 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.144 0.856 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.024 -8.565 -8.831 16.519 hybrid contribution 1.395 1.546 1.518 2.577 sum -9.630 -7.019 -7.313 13.981 Atomic orbital electron populations 1.20911 0.87909 1.04482 1.03586 1.19922 0.98007 0.90811 0.99695 1.21387 0.92858 0.99209 0.96980 1.19896 0.94484 0.94354 0.98696 1.20297 0.92422 0.92813 0.91724 0.90041 1.59295 1.12142 1.11513 1.52931 1.19699 0.94859 0.95406 0.93046 1.21576 1.38074 1.02439 0.95094 0.91408 1.25912 0.96686 1.01481 0.95434 1.70112 1.47512 1.39374 1.00262 0.85504 0.78080 0.79642 0.78156 1.20010 1.21554 1.18375 1.20874 0.99936 0.90615 0.97671 1.15899 0.92428 0.86027 1.10676 1.25790 0.92371 0.92579 0.92367 1.81198 1.09567 1.12144 1.10826 1.19962 0.90541 0.97045 0.97357 1.20964 1.00813 0.91825 1.03877 0.90015 0.89325 0.90188 0.84109 0.84081 0.85636 0.98914 0.99172 0.92979 0.86159 0.89101 0.92758 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.19 71.24 0.65 -0.94 16 2 C -0.08 -1.88 5.87 -19.90 -0.12 -1.99 16 3 C -0.09 -2.33 9.31 22.33 0.21 -2.12 16 4 C -0.07 -2.43 4.95 -19.90 -0.10 -2.53 16 5 C 0.14 5.26 2.99 44.17 0.13 5.39 16 6 H 0.08 3.04 8.00 -2.38 -0.02 3.02 16 7 N -0.83 -29.09 9.02 -171.80 -1.55 -30.64 16 8 C 0.01 0.42 4.60 29.84 0.14 0.55 16 9 C -0.53 -27.92 8.55 25.60 0.22 -27.70 16 10 H 0.07 3.33 7.15 -2.91 -0.02 3.31 16 11 C 0.00 0.16 5.46 84.65 0.46 0.62 16 12 N -0.93 -55.13 13.29 21.45 0.28 -54.84 16 13 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 C -0.07 -2.24 9.00 22.54 0.20 -2.04 16 18 C -0.05 -1.33 5.73 -21.36 -0.12 -1.46 16 19 C 0.28 8.53 13.80 88.33 1.22 9.75 16 20 N -0.46 -15.21 18.54 19.01 0.35 -14.86 16 21 C -0.05 -1.08 5.91 -19.60 -0.12 -1.20 16 22 C -0.12 -2.01 8.79 71.23 0.63 -1.38 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.09 0.92 6.69 -2.39 -0.02 0.90 16 25 H 0.08 1.00 8.08 -2.38 -0.02 0.98 16 26 H 0.14 3.42 8.03 -2.91 -0.02 3.39 16 27 H 0.35 12.33 7.90 -89.69 -0.71 11.62 16 28 H 0.33 11.39 7.34 -89.69 -0.66 10.73 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 31 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 32 H 0.12 3.91 6.66 -2.91 -0.02 3.89 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.05 1.04 7.09 -2.39 -0.02 1.03 16 35 H 0.10 1.23 6.70 -2.39 -0.02 1.21 16 Total: -1.00 -63.20 300.36 4.28 -58.93 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -0.25 Total: 21.94 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 3.41 Total: -25.04 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -0.91 Total: -100.34 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -63.20 4.28 -58.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.867 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds