Wall clock time and date at job start Mon Mar 30 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38385 * 119.92374 * 2 1 4 4 C 1.38340 * 120.30047 * 179.76398 * 3 2 1 5 5 C 1.50707 * 119.92315 * 180.23479 * 4 3 2 6 6 H 1.09002 * 109.46782 * 20.22807 * 5 4 3 7 7 N 1.46893 * 109.47280 * 140.23165 * 5 4 3 8 8 C 1.53004 * 109.46863 * 260.23195 * 5 4 3 9 9 C 1.50698 * 109.46790 * 174.99742 * 8 5 4 10 10 H 1.07999 * 120.00626 * 359.97438 * 9 8 5 11 11 C 1.37883 * 119.99817 * 180.02562 * 9 8 5 12 12 N 1.31512 * 119.99869 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47103 * 89.99672 * 13 11 9 15 15 H 1.48500 * 109.47038 * 209.99896 * 13 11 9 16 16 H 1.48504 * 109.47231 * 329.99844 * 13 11 9 17 17 C 1.37965 * 120.15698 * 0.46822 * 4 3 2 18 18 C 1.39616 * 119.84113 * 359.51158 * 17 4 3 19 19 C 1.43204 * 120.14929 * 180.23729 * 18 17 4 20 20 N 4.80108 * 134.70491 * 179.97438 * 2 1 3 21 21 C 1.37929 * 119.92234 * 179.97438 * 2 1 3 22 22 C 1.50694 * 120.07785 * 0.02901 * 21 2 1 23 23 H 1.08999 * 109.47370 * 270.02319 * 1 2 3 24 24 H 1.09000 * 109.47048 * 30.03008 * 1 2 3 25 25 H 1.09001 * 109.47310 * 150.02158 * 1 2 3 26 26 H 1.08002 * 119.84762 * 359.97438 * 3 2 1 27 27 H 1.00903 * 111.00064 * 296.04512 * 7 5 4 28 28 H 1.00896 * 111.00035 * 60.00047 * 7 5 4 29 29 H 1.08997 * 109.47205 * 294.99661 * 8 5 4 30 30 H 1.09003 * 109.47320 * 55.00056 * 8 5 4 31 31 H 0.97006 * 119.99919 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.08297 * 179.79372 * 17 4 3 33 33 H 1.08998 * 109.47399 * 269.97456 * 22 21 2 34 34 H 1.09004 * 109.47447 * 29.97822 * 22 21 2 35 35 H 1.08996 * 109.47346 * 149.97332 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2085 0.0049 5 6 4.3238 2.5196 0.0102 6 1 3.6628 3.3104 0.3648 7 7 5.4882 2.4188 0.9001 8 6 4.7932 2.8454 -1.4091 9 6 5.4280 4.2121 -1.4268 10 1 5.4900 4.7906 -0.5170 11 6 5.9286 4.7244 -2.6050 12 7 5.8527 4.0202 -3.7130 13 14 6.7148 6.4188 -2.6272 14 1 8.1689 6.2934 -2.3533 15 1 6.5140 7.0402 -3.9609 16 1 6.0864 7.2697 -1.5849 17 6 4.2816 0.0202 0.0001 18 6 3.5915 -1.1935 0.0006 19 6 4.3124 -2.4308 0.0007 20 7 4.8843 -3.4123 0.0015 21 6 2.1950 -1.1954 0.0005 22 6 1.4415 -2.5005 0.0005 23 1 -0.3634 0.0004 1.0276 24 1 -0.3633 0.8897 -0.5143 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6536 2.1325 -0.0004 27 1 5.2012 2.2680 1.8556 28 1 6.1167 1.6920 0.5923 29 1 5.5226 2.1018 -1.7302 30 1 3.9391 2.8327 -2.0862 31 1 6.2053 4.3805 -4.5418 32 1 5.3616 0.0287 0.0006 33 1 1.2598 -2.8152 1.0281 34 1 0.4891 -2.3702 -0.5135 35 1 2.0306 -3.2601 -0.5134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260385746.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:36 Heat of formation + Delta-G solvation = 34.458002 kcal Electronic energy + Delta-G solvation = -16707.557670 eV Core-core repulsion = 14090.683491 eV Total energy + Delta-G solvation = -2616.874179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99183 -36.68802 -35.89868 -32.92701 -32.36832 -31.70228 -28.53862 -27.76988 -26.37736 -24.06773 -23.40853 -21.39654 -19.30866 -17.85823 -16.44621 -16.07450 -15.69357 -15.01318 -14.61736 -14.34771 -13.95607 -13.48759 -13.36636 -13.09963 -12.96466 -12.91533 -12.79064 -12.42701 -12.22170 -11.88019 -11.66554 -11.32149 -11.16820 -10.98435 -10.79330 -10.52598 -10.26632 -9.62564 -9.11712 -8.68796 -8.33990 -8.28991 -7.99525 -5.93117 -3.92241 0.86648 1.38107 2.69541 3.01391 3.38047 3.44064 3.47752 3.87474 3.94447 4.52846 4.71635 4.74025 4.97248 5.06634 5.29058 5.31525 5.38918 5.45816 5.54503 5.55748 5.62583 5.71865 5.74854 5.88278 6.11792 6.22577 6.34952 6.49712 6.62765 6.78413 6.95222 7.49753 7.51218 7.66607 7.92986 8.06454 8.11748 8.49559 9.14009 9.70115 11.18549 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.005400 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.508277 B = 5184.207322 C = 5594.110460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.079 4.079 4 C -0.099 4.099 5 C 0.132 3.868 6 H 0.082 0.918 7 N -0.821 5.821 8 C 0.036 3.964 9 C -0.495 4.495 10 H 0.063 0.937 11 C 0.051 3.949 12 N -0.902 5.902 13 Si 0.893 3.107 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.274 1.274 17 C -0.071 4.071 18 C -0.033 4.033 19 C 0.265 3.735 20 N -0.431 5.431 21 C -0.053 4.053 22 C -0.121 4.121 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.323 0.677 28 H 0.334 0.666 29 H 0.017 0.983 30 H 0.021 0.979 31 H 0.258 0.742 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -8.568 8.648 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.098 4.098 4 C -0.102 4.102 5 C 0.020 3.980 6 H 0.100 0.900 7 N -0.348 5.348 8 C -0.002 4.002 9 C -0.534 4.534 10 H 0.081 0.919 11 C -0.149 4.149 12 N -0.542 5.542 13 Si 0.721 3.279 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.199 1.199 17 C -0.092 4.092 18 C -0.036 4.036 19 C -0.050 4.050 20 N -0.106 5.106 21 C -0.056 4.056 22 C -0.177 4.177 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.148 0.852 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.851 -9.316 8.235 15.864 hybrid contribution 0.044 0.297 -0.069 0.308 sum -9.808 -9.019 8.166 15.628 Atomic orbital electron populations 1.20851 0.90826 1.03134 1.02357 1.19619 0.96129 0.92010 1.01152 1.21231 0.93776 0.97640 0.97191 1.21358 0.94438 0.97611 0.96760 1.20874 0.89867 0.89348 0.97924 0.89982 1.58833 1.17293 1.54456 1.04266 1.19162 0.96382 0.97306 0.87302 1.21142 1.36916 1.00958 0.94369 0.91890 1.25022 0.96528 0.97556 0.95776 1.69969 1.47227 1.37620 0.99417 0.86581 0.79724 0.84593 0.76963 1.20862 1.21586 1.19942 1.20963 1.00137 0.90283 0.97767 1.15824 0.91499 0.86928 1.09357 1.25722 0.93063 0.92840 0.93343 1.81205 1.08779 1.11174 1.09474 1.19587 0.91242 0.95494 0.99291 1.20910 1.00427 0.93784 1.02610 0.91116 0.91159 0.91182 0.85178 0.86563 0.85234 0.96475 0.96032 0.93209 0.85356 0.90795 0.90374 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.60 36.00 0.35 -0.64 16 2 C -0.09 -1.04 5.87 -104.68 -0.61 -1.66 16 3 C -0.08 -1.07 9.31 -39.49 -0.37 -1.43 16 4 C -0.10 -1.54 4.94 -104.68 -0.52 -2.05 16 5 C 0.13 2.42 2.93 -68.86 -0.20 2.22 16 6 H 0.08 1.51 8.00 -51.93 -0.42 1.10 16 7 N -0.82 -14.05 8.77 -5.65 -0.05 -14.10 16 8 C 0.04 0.86 4.60 -27.88 -0.13 0.73 16 9 C -0.50 -13.49 8.84 -34.44 -0.30 -13.80 16 10 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 11 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 12 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 13 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.07 -1.05 9.00 -39.17 -0.35 -1.40 16 18 C -0.03 -0.45 5.73 -106.93 -0.61 -1.06 16 19 C 0.27 3.88 13.80 -22.47 -0.31 3.57 16 20 N -0.43 -6.93 18.54 41.83 0.78 -6.15 16 21 C -0.05 -0.65 5.91 -104.21 -0.62 -1.26 16 22 C -0.12 -1.16 9.20 36.00 0.33 -0.82 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 26 H 0.13 1.59 8.03 -52.49 -0.42 1.17 16 27 H 0.32 4.57 9.06 -39.29 -0.36 4.21 16 28 H 0.33 5.51 7.34 -39.29 -0.29 5.23 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 32 H 0.13 1.87 6.66 -52.49 -0.35 1.52 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.61 5.94 -51.93 -0.31 0.30 16 35 H 0.06 0.65 7.09 -51.93 -0.37 0.28 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -30.71 301.41 -6.93 -37.64 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.47 Total: 3.74 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.45 Total: -16.27 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 1.46 Total: -46.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.71 -6.93 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385746.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.101 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds