Wall clock time and date at job start Mon Mar 30 2020 07:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86792 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47309 * 239.99603 * 3 2 1 5 5 H 1.48497 * 109.47568 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47072 * 120.00219 * 3 2 1 7 7 C 1.39955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99371 * 195.10481 * 7 2 1 9 9 C 1.41399 * 120.00033 * 15.10904 * 7 2 1 10 10 C 1.40731 * 120.24213 * 25.42694 * 9 7 2 11 11 C 1.37597 * 119.73978 * 180.27692 * 10 9 7 12 12 C 1.38653 * 120.25123 * 359.70277 * 11 10 9 13 13 C 1.38611 * 120.49844 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.25016 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.12654 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47376 * 264.99873 * 15 14 13 17 17 C 1.53002 * 109.47405 * 174.99849 * 16 15 14 18 18 C 1.52993 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47570 * 300.00399 * 18 17 16 20 20 C 1.53004 * 109.47103 * 60.00066 * 19 18 17 21 21 C 1.52999 * 109.47118 * 295.00577 * 16 15 14 22 22 H 0.97001 * 120.00527 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.13303 * 0.02562 * 10 9 7 24 24 H 1.08008 * 119.87602 * 179.73176 * 11 10 9 25 25 H 1.08007 * 119.75314 * 180.02562 * 12 11 10 26 26 H 1.08003 * 119.87494 * 179.97438 * 13 12 11 27 27 H 1.08996 * 109.46822 * 145.00148 * 15 14 13 28 28 H 1.08997 * 109.47151 * 25.00208 * 15 14 13 29 29 H 1.09004 * 109.46978 * 55.00409 * 16 15 14 30 30 H 1.09004 * 109.46595 * 60.00326 * 17 16 15 31 31 H 1.08996 * 109.47017 * 300.00881 * 17 16 15 32 32 H 1.09004 * 109.47079 * 60.00703 * 18 17 16 33 33 H 1.09005 * 109.47151 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.47609 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47168 * 300.00250 * 19 18 17 36 36 H 1.08999 * 109.46697 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47024 * 59.99995 * 20 19 18 38 38 H 1.08995 * 109.46799 * 299.99223 * 21 16 15 39 39 H 1.08996 * 109.47277 * 59.99511 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0599 -1.2280 0.2443 9 6 1.3376 -2.4156 -0.3181 10 6 0.1849 -2.3926 -1.1252 11 6 -0.4626 -3.5693 -1.4241 12 6 0.0201 -4.7751 -0.9385 13 6 1.1577 -4.8100 -0.1474 14 6 1.8215 -3.6453 0.1643 15 6 3.0585 -3.6867 1.0242 16 6 2.6749 -3.4273 2.4824 17 6 3.9090 -3.5922 3.3716 18 6 3.5255 -3.3322 4.8297 19 6 2.9835 -1.9082 4.9684 20 6 1.7493 -1.7433 4.0793 21 6 2.1325 -2.0034 2.6216 22 1 -0.4851 0.8400 0.0004 23 1 -0.1923 -1.4547 -1.5051 24 1 -1.3499 -3.5538 -2.0398 25 1 -0.4943 -5.6940 -1.1785 26 1 1.5246 -5.7548 0.2258 27 1 3.7584 -2.9205 0.6909 28 1 3.5265 -4.6675 0.9406 29 1 1.9087 -4.1395 2.7888 30 1 4.6752 -2.8799 3.0653 31 1 4.2954 -4.6065 3.2724 32 1 2.7591 -4.0441 5.1363 33 1 4.4048 -3.4492 5.4631 34 1 2.7107 -1.7228 6.0073 35 1 3.7499 -1.1962 4.6618 36 1 1.3635 -0.7287 4.1778 37 1 0.9830 -2.4552 4.3858 38 1 2.8987 -1.2913 2.3153 39 1 1.2533 -1.8860 1.9881 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:54 Heat of formation + Delta-G solvation = -21.216035 kcal Electronic energy + Delta-G solvation = -18214.756329 eV Core-core repulsion = 15699.008286 eV Total energy + Delta-G solvation = -2515.748043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.66527 -37.04490 -33.64430 -32.70315 -30.23147 -29.37577 -29.01523 -25.84385 -24.40732 -21.98094 -21.05149 -20.81237 -19.31991 -18.87723 -17.03598 -15.41712 -14.86961 -14.51518 -14.01067 -13.73253 -13.59439 -13.38606 -12.97746 -12.59839 -12.19005 -11.96972 -11.61705 -11.39688 -11.31920 -11.08850 -10.88641 -10.81582 -10.64922 -10.43804 -10.37514 -10.28596 -9.71130 -9.60639 -9.44527 -9.25962 -9.09944 -8.80921 -7.26747 -7.22712 -6.67759 -4.24970 2.83419 3.06307 3.08546 3.11518 3.27836 3.96608 4.70273 5.19996 5.28645 5.32064 5.66721 5.80027 5.83388 6.02059 6.05937 6.08977 6.15186 6.21084 6.25972 6.40899 6.43112 6.47965 6.53769 6.58407 6.66195 6.68800 6.85508 6.92523 6.96958 7.07842 7.17142 7.33722 7.36093 7.47872 7.66651 7.71994 7.98911 8.11167 8.16471 8.36601 8.69787 8.96119 9.03862 10.25523 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.011682 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.041617 B = 2396.274024 C = 3689.502763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.896 3.104 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.448 4.448 8 H 0.079 0.921 9 C 0.115 3.885 10 C -0.164 4.164 11 C -0.112 4.112 12 C -0.241 4.241 13 C -0.094 4.094 14 C -0.188 4.188 15 C -0.047 4.047 16 C -0.072 4.072 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.109 4.109 22 H 0.278 0.722 23 H 0.119 0.881 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -1.715 5.590 7.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.183 4.183 11 C -0.130 4.130 12 C -0.260 4.260 13 C -0.113 4.113 14 C -0.189 4.189 15 C -0.084 4.084 16 C -0.091 4.091 17 C -0.153 4.153 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.146 4.146 22 H 0.089 0.911 23 H 0.137 0.863 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.090 -1.536 5.611 7.111 hybrid contribution 0.211 0.757 0.060 0.788 sum 4.301 -0.779 5.671 7.160 Atomic orbital electron populations 1.69797 1.07343 1.28928 1.36276 1.25787 0.94629 1.00774 0.92781 0.86547 0.80312 0.81058 0.79949 1.19027 1.20514 1.18949 1.19465 0.96986 0.90499 1.40858 0.90265 1.17405 0.91287 0.91501 0.88507 1.21378 0.99043 0.96642 1.01235 1.20673 0.98576 0.93545 1.00218 1.20343 1.00921 0.96134 1.08598 1.20382 0.96017 0.96002 0.98877 1.19654 1.00502 0.93515 1.05234 1.20204 0.95806 0.99228 0.93199 1.21086 0.95729 0.98023 0.94232 1.21636 0.98629 1.00374 0.94626 1.21494 0.99800 0.97075 0.96911 1.21539 0.98486 0.96739 0.98740 1.21612 0.96567 1.00513 0.97231 1.21878 1.03536 0.95093 0.94063 0.91060 0.86329 0.89812 0.89916 0.89775 0.92118 0.94148 0.92552 0.92448 0.93030 0.92535 0.93119 0.93300 0.92483 0.92939 0.93041 0.92284 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.88 10.86 55.55 0.60 -19.28 16 2 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.90 18.36 29.58 -169.99 -5.03 13.33 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -10.99 5.13 -37.74 -0.19 -11.18 16 8 H 0.08 1.90 5.66 -52.49 -0.30 1.60 16 9 C 0.12 2.91 4.63 -106.83 -0.49 2.42 16 10 C -0.16 -4.21 8.69 -38.87 -0.34 -4.54 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.24 -5.50 10.05 -39.29 -0.39 -5.89 16 13 C -0.09 -2.14 9.66 -39.66 -0.38 -2.52 16 14 C -0.19 -4.36 4.90 -103.92 -0.51 -4.87 16 15 C -0.05 -0.94 4.62 -27.88 -0.13 -1.07 16 16 C -0.07 -1.34 2.18 -90.62 -0.20 -1.53 16 17 C -0.12 -1.78 5.20 -26.73 -0.14 -1.92 16 18 C -0.12 -1.62 5.92 -26.74 -0.16 -1.78 16 19 C -0.12 -1.74 5.92 -26.73 -0.16 -1.89 16 20 C -0.12 -2.11 5.92 -26.75 -0.16 -2.27 16 21 C -0.11 -2.17 3.55 -26.76 -0.09 -2.26 16 22 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 23 H 0.12 3.15 6.13 -52.49 -0.32 2.83 16 24 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 25 H 0.08 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.08 1.70 8.06 -52.48 -0.42 1.28 16 27 H 0.06 1.24 6.49 -51.93 -0.34 0.91 16 28 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 39 H 0.10 2.40 5.24 -51.93 -0.27 2.13 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -25.08 297.57 -9.99 -35.07 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.21 Total: 7.03 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: -3.84 Total: -40.63 kcal Atomic # 7 Polarization: -19.88 SS G_CDS: 0.60 Total: -19.28 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.08 -9.99 -35.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.852 kcal (2) G-P(sol) polarization free energy of solvation -25.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds