Wall clock time and date at job start Mon Mar 30 2020 07:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86792 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47309 * 239.99603 * 3 2 1 5 5 H 1.48497 * 109.47568 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47072 * 120.00219 * 3 2 1 7 7 C 1.39955 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99371 * 195.10481 * 7 2 1 9 9 C 1.41399 * 120.00033 * 15.10904 * 7 2 1 10 10 C 1.40731 * 120.24213 * 25.42694 * 9 7 2 11 11 C 1.37597 * 119.73978 * 180.27692 * 10 9 7 12 12 C 1.38653 * 120.25123 * 359.70277 * 11 10 9 13 13 C 1.38611 * 120.49844 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.25016 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.12654 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47376 * 264.99873 * 15 14 13 17 17 C 1.53002 * 109.47405 * 174.99849 * 16 15 14 18 18 C 1.52993 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47570 * 300.00399 * 18 17 16 20 20 C 1.53004 * 109.47103 * 60.00066 * 19 18 17 21 21 C 1.52999 * 109.47118 * 295.00577 * 16 15 14 22 22 H 0.97001 * 120.00527 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.13303 * 0.02562 * 10 9 7 24 24 H 1.08008 * 119.87602 * 179.73176 * 11 10 9 25 25 H 1.08007 * 119.75314 * 180.02562 * 12 11 10 26 26 H 1.08003 * 119.87494 * 179.97438 * 13 12 11 27 27 H 1.08996 * 109.46822 * 145.00148 * 15 14 13 28 28 H 1.08997 * 109.47151 * 25.00208 * 15 14 13 29 29 H 1.09004 * 109.46978 * 55.00409 * 16 15 14 30 30 H 1.09004 * 109.46595 * 60.00326 * 17 16 15 31 31 H 1.08996 * 109.47017 * 300.00881 * 17 16 15 32 32 H 1.09004 * 109.47079 * 60.00703 * 18 17 16 33 33 H 1.09005 * 109.47151 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.47609 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47168 * 300.00250 * 19 18 17 36 36 H 1.08999 * 109.46697 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47024 * 59.99995 * 20 19 18 38 38 H 1.08995 * 109.46799 * 299.99223 * 21 16 15 39 39 H 1.08996 * 109.47277 * 59.99511 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0599 -1.2280 0.2443 9 6 1.3376 -2.4156 -0.3181 10 6 0.1849 -2.3926 -1.1252 11 6 -0.4626 -3.5693 -1.4241 12 6 0.0201 -4.7751 -0.9385 13 6 1.1577 -4.8100 -0.1474 14 6 1.8215 -3.6453 0.1643 15 6 3.0585 -3.6867 1.0242 16 6 2.6749 -3.4273 2.4824 17 6 3.9090 -3.5922 3.3716 18 6 3.5255 -3.3322 4.8297 19 6 2.9835 -1.9082 4.9684 20 6 1.7493 -1.7433 4.0793 21 6 2.1325 -2.0034 2.6216 22 1 -0.4851 0.8400 0.0004 23 1 -0.1923 -1.4547 -1.5051 24 1 -1.3499 -3.5538 -2.0398 25 1 -0.4943 -5.6940 -1.1785 26 1 1.5246 -5.7548 0.2258 27 1 3.7584 -2.9205 0.6909 28 1 3.5265 -4.6675 0.9406 29 1 1.9087 -4.1395 2.7888 30 1 4.6752 -2.8799 3.0653 31 1 4.2954 -4.6065 3.2724 32 1 2.7591 -4.0441 5.1363 33 1 4.4048 -3.4492 5.4631 34 1 2.7107 -1.7228 6.0073 35 1 3.7499 -1.1962 4.6618 36 1 1.3635 -0.7287 4.1778 37 1 0.9830 -2.4552 4.3858 38 1 2.8987 -1.2913 2.3153 39 1 1.2533 -1.8860 1.9881 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:52 Heat of formation + Delta-G solvation = -30.218042 kcal Electronic energy + Delta-G solvation = -18215.146685 eV Core-core repulsion = 15699.008286 eV Total energy + Delta-G solvation = -2516.138399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.26190 -38.62982 -35.48281 -34.25585 -31.68450 -31.13063 -30.62411 -27.59428 -26.09352 -23.38589 -22.65911 -22.48041 -20.89805 -20.39188 -18.88181 -17.22481 -16.29053 -16.16211 -15.64484 -15.42208 -14.88845 -14.83629 -14.56667 -14.34257 -13.80386 -13.55055 -13.17247 -13.01223 -12.84491 -12.73106 -12.50125 -12.38571 -12.22954 -12.08617 -11.78490 -11.70351 -11.28846 -11.27128 -11.04733 -10.90992 -10.70555 -10.43133 -9.14441 -9.06617 -8.50564 -6.14029 1.05335 1.20257 1.39407 1.47128 1.55781 2.23699 2.86134 3.77764 3.95610 4.04694 4.10045 4.37635 4.41473 4.53793 4.61179 4.73420 4.76836 4.79921 4.82038 4.83526 4.90814 4.94145 5.15196 5.18629 5.22650 5.29672 5.31976 5.42576 5.45814 5.47621 5.49946 5.59704 5.67623 5.80176 5.88557 6.01796 6.14447 6.25705 6.28104 6.50907 6.82166 7.08511 7.17320 8.44675 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.011682 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.041617 B = 2396.274024 C = 3689.502763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.041 3.959 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.091 3.909 10 C -0.195 4.195 11 C -0.122 4.122 12 C -0.244 4.244 13 C -0.103 4.103 14 C -0.194 4.194 15 C -0.044 4.044 16 C -0.066 4.066 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.101 4.101 22 H 0.281 0.719 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.801 -2.595 7.087 9.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.172 4.172 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.089 3.911 10 C -0.215 4.215 11 C -0.140 4.140 12 C -0.264 4.264 13 C -0.121 4.121 14 C -0.195 4.195 15 C -0.082 4.082 16 C -0.084 4.084 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.138 4.138 22 H 0.092 0.908 23 H 0.118 0.882 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.602 -2.427 7.108 9.369 hybrid contribution -0.315 0.957 -0.435 1.097 sum 5.286 -1.470 6.673 8.639 Atomic orbital electron populations 1.69877 1.08673 1.29733 1.37194 1.26455 0.95174 1.03506 0.92112 0.85633 0.79141 0.77395 0.80007 1.18850 1.20001 1.18246 1.19536 0.96869 0.91025 1.41332 0.90364 1.17720 0.91618 0.92826 0.88968 1.21385 1.00453 0.96699 1.02956 1.20917 0.99088 0.93520 1.00487 1.20696 1.01043 0.96670 1.07946 1.20755 0.95888 0.96950 0.98543 1.20072 1.01448 0.93096 1.04929 1.20227 0.94268 1.00032 0.93629 1.20992 0.97034 0.96496 0.93920 1.21590 0.96786 1.01510 0.94887 1.21493 1.00979 0.96328 0.96153 1.21512 0.96896 0.97536 0.99125 1.21579 0.98101 1.00006 0.96168 1.21652 1.01181 0.95997 0.94989 0.90810 0.88248 0.88198 0.87237 0.86986 0.93007 0.92090 0.93455 0.92400 0.91254 0.92238 0.90431 0.91178 0.92476 0.93725 0.93192 0.93638 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.96 10.86 21.83 0.24 -42.72 16 2 C 0.04 2.04 5.13 85.26 0.44 2.47 16 3 Si 0.96 38.20 29.58 68.60 2.03 40.23 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.46 -23.15 5.13 23.46 0.12 -23.03 16 8 H 0.08 3.85 5.66 -2.91 -0.02 3.83 16 9 C 0.09 4.73 4.63 -21.29 -0.10 4.63 16 10 C -0.20 -10.42 8.69 22.73 0.20 -10.22 16 11 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 12 C -0.24 -10.91 10.05 22.46 0.23 -10.69 16 13 C -0.10 -4.55 9.66 22.22 0.21 -4.33 16 14 C -0.19 -9.03 4.90 -19.41 -0.10 -9.13 16 15 C -0.04 -1.74 4.62 29.85 0.14 -1.60 16 16 C -0.07 -2.36 2.18 -10.79 -0.02 -2.39 16 17 C -0.11 -3.09 5.20 30.59 0.16 -2.94 16 18 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 19 C -0.11 -3.05 5.92 30.59 0.18 -2.86 16 20 C -0.12 -4.12 5.92 30.58 0.18 -3.94 16 21 C -0.10 -4.05 3.55 30.58 0.11 -3.94 16 22 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 23 H 0.10 5.58 6.13 -2.91 -0.02 5.56 16 24 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 25 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 26 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 27 H 0.05 2.10 6.49 -2.39 -0.02 2.09 16 28 H 0.06 2.11 8.05 -2.39 -0.02 2.09 16 29 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 30 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.90 6.95 -2.39 -0.02 1.89 16 39 H 0.06 2.77 5.24 -2.39 -0.01 2.76 16 Total: -1.00 -54.97 297.57 5.43 -49.55 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 1.01 Total: 29.12 kcal Atomic # 6 Polarization: -78.33 SS G_CDS: 2.15 Total: -76.18 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.24 Total: -42.72 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -54.97 5.43 -49.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.331 kcal (2) G-P(sol) polarization free energy of solvation -54.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds