Wall clock time and date at job start Mon Mar 30 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.33988 * 126.04390 * 300.02338 * 4 2 1 6 6 H 0.97003 * 125.02166 * 359.96168 * 5 4 2 7 7 N 1.39956 * 109.95476 * 180.02562 * 5 4 2 8 8 C 1.32055 * 108.96343 * 359.97438 * 7 5 4 9 9 C 1.41158 * 134.68844 * 180.02562 * 8 7 5 10 10 C 1.35634 * 119.59441 * 179.22658 * 9 8 7 11 11 C 1.39682 * 121.81968 * 0.70373 * 10 9 8 12 12 C 1.50698 * 119.14037 * 179.55808 * 11 10 9 13 13 C 1.50695 * 109.47482 * 269.97672 * 12 11 10 14 14 H 1.08006 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00443 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00285 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00183 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47419 * 89.99530 * 17 15 13 19 19 H 1.48504 * 109.47078 * 210.00176 * 17 15 13 20 20 H 1.48498 * 109.46685 * 329.99802 * 17 15 13 21 21 C 1.35661 * 121.72503 * 359.52838 * 11 10 9 22 22 C 1.38245 * 126.04786 * 119.71257 * 4 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.07995 * 120.19734 * 359.97438 * 9 8 7 31 31 H 1.08004 * 119.08998 * 180.23352 * 10 9 8 32 32 H 1.08999 * 109.47083 * 29.97566 * 12 11 10 33 33 H 1.09000 * 109.47277 * 149.97060 * 12 11 10 34 34 H 0.96999 * 120.00450 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.23173 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7841 -0.3602 2.4997 6 1 1.2468 0.3999 2.7725 7 7 2.4158 -1.2523 3.3737 8 6 3.0599 -2.1626 2.6662 9 6 3.8545 -3.2858 2.9818 10 6 4.3710 -4.0431 1.9821 11 6 4.1517 -3.7363 0.6371 12 6 4.7629 -4.6136 -0.4248 13 6 6.1300 -4.0906 -0.7830 14 1 6.5174 -3.2105 -0.2911 15 6 6.8863 -4.7354 -1.7385 16 7 8.0793 -4.2787 -2.0515 17 14 6.2160 -6.2571 -2.5898 18 1 5.4702 -5.8542 -3.8090 19 1 7.3417 -7.1480 -2.9699 20 1 5.3034 -6.9788 -1.6672 21 6 3.4024 -2.6694 0.2618 22 6 2.8259 -1.8424 1.2493 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 4.0400 -3.5475 4.0130 31 1 4.9746 -4.9029 2.2328 32 1 4.8510 -5.6325 -0.0479 33 1 4.1279 -4.6077 -1.3108 34 1 8.6112 -4.7321 -2.7240 35 1 3.2481 -2.4547 -0.7853 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260419679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:47 Heat of formation + Delta-G solvation = 68.190995 kcal Electronic energy + Delta-G solvation = -16900.420242 eV Core-core repulsion = 14285.008836 eV Total energy + Delta-G solvation = -2615.411407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06300 -37.26520 -35.49818 -33.04805 -31.44748 -30.52343 -29.33623 -27.39758 -26.87371 -24.00962 -22.35205 -22.08838 -20.19220 -19.15596 -17.33278 -16.72342 -16.00062 -15.38332 -14.76719 -14.45764 -14.10710 -14.00678 -13.51074 -13.20842 -13.17938 -12.51724 -12.48901 -11.91484 -11.72867 -11.51277 -11.45478 -11.23424 -11.09265 -10.85077 -10.47773 -10.18005 -10.02308 -9.76724 -9.53748 -9.25021 -8.54490 -8.20115 -6.91200 -6.03382 -4.01872 1.05961 2.37159 2.86554 2.92069 3.31001 3.39037 3.42145 4.39725 4.44291 4.44902 4.64394 4.74572 4.92015 5.17092 5.29209 5.32976 5.43093 5.48590 5.54966 5.76325 5.77486 5.83114 6.01545 6.02388 6.04046 6.18182 6.37058 6.63259 6.94500 7.00330 7.06894 7.10421 7.35032 7.48693 7.67915 7.75032 7.97696 8.55201 9.03325 9.57400 11.09679 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.006040 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.585319 B = 4634.936410 C = 5181.726063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.148 4.148 4 C 0.101 3.899 5 N -0.432 5.432 6 H 0.433 0.567 7 N -0.320 5.320 8 C 0.102 3.898 9 C -0.127 4.127 10 C -0.049 4.049 11 C -0.067 4.067 12 C 0.018 3.982 13 C -0.511 4.511 14 H 0.074 0.926 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.065 4.065 22 C -0.183 4.183 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.027 0.973 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 7.870 4.589 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.054 4.054 3 C -0.205 4.205 4 C -0.037 4.037 5 N -0.133 5.133 6 H 0.276 0.724 7 N -0.149 5.149 8 C -0.051 4.051 9 C -0.148 4.148 10 C -0.071 4.071 11 C -0.068 4.068 12 C -0.019 4.019 13 C -0.549 4.549 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.086 4.086 22 C -0.192 4.192 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.072 8.225 5.713 18.096 hybrid contribution -0.179 -0.560 -1.112 1.257 sum -15.251 7.665 4.602 17.678 Atomic orbital electron populations 1.21877 0.93894 1.02618 1.02038 1.19901 0.95832 0.95863 0.93824 1.21878 1.02259 0.94425 1.01981 1.20963 0.99392 0.96344 0.86958 1.46017 1.39417 1.24320 1.03547 0.72365 1.77553 1.18781 1.05509 1.13012 1.20895 0.97171 0.95424 0.91574 1.19776 1.01334 0.94413 0.99313 1.20763 0.95908 0.98260 0.92205 1.19636 0.95816 0.96733 0.94620 1.18776 0.96414 0.94419 0.92292 1.20999 0.98447 1.13619 1.21806 0.90828 1.25006 0.94677 0.97184 0.96455 1.69907 1.10719 1.40695 1.32723 0.86821 0.78816 0.83655 0.80318 1.20253 1.21355 1.18862 1.20020 0.97527 0.93849 0.97166 1.19397 1.06424 0.98779 0.94632 0.91463 0.93021 0.91905 0.87942 0.93051 0.91651 0.91440 0.86099 0.85637 0.95507 0.96016 0.92695 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.18 37.16 0.34 -0.88 16 2 C -0.03 -0.36 3.34 -91.77 -0.31 -0.66 16 3 C -0.15 -1.33 9.17 37.15 0.34 -0.99 16 4 C 0.10 1.42 5.78 -81.65 -0.47 0.95 16 5 N -0.43 -5.84 7.18 33.85 0.24 -5.60 16 6 H 0.43 4.17 8.96 -182.70 -1.64 2.53 16 7 N -0.32 -5.53 12.70 33.26 0.42 -5.11 16 8 C 0.10 1.91 7.49 -83.05 -0.62 1.29 16 9 C -0.13 -2.30 10.08 -39.41 -0.40 -2.69 16 10 C -0.05 -0.94 9.51 -39.97 -0.38 -1.32 16 11 C -0.07 -1.41 5.03 -105.01 -0.53 -1.94 16 12 C 0.02 0.43 4.12 -29.04 -0.12 0.31 16 13 C -0.51 -14.38 9.65 -34.45 -0.33 -14.71 16 14 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 17 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 21 C -0.07 -1.27 9.57 -39.41 -0.38 -1.65 16 22 C -0.18 -3.29 6.25 -105.19 -0.66 -3.95 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.10 1.14 7.91 -51.93 -0.41 0.72 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 33 H 0.02 0.50 7.49 -51.93 -0.39 0.11 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.12 2.17 7.94 -52.49 -0.42 1.75 16 LS Contribution 297.40 15.07 4.48 4.48 Total: -1.00 -32.59 297.40 -8.55 -41.14 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.19 Total: -0.28 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -3.61 Total: -24.39 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.44 Total: -37.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.59 -8.55 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.333 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds