Wall clock time and date at job start Mon Mar 30 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.33988 * 126.04390 * 300.02338 * 4 2 1 6 6 H 0.97003 * 125.02166 * 359.96168 * 5 4 2 7 7 N 1.39956 * 109.95476 * 180.02562 * 5 4 2 8 8 C 1.32055 * 108.96343 * 359.97438 * 7 5 4 9 9 C 1.41158 * 134.68844 * 180.02562 * 8 7 5 10 10 C 1.35634 * 119.59441 * 179.22658 * 9 8 7 11 11 C 1.39682 * 121.81968 * 0.70373 * 10 9 8 12 12 C 1.50698 * 119.14037 * 179.55808 * 11 10 9 13 13 C 1.50695 * 109.47482 * 269.97672 * 12 11 10 14 14 H 1.08006 * 119.99702 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00443 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00285 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00183 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47419 * 89.99530 * 17 15 13 19 19 H 1.48504 * 109.47078 * 210.00176 * 17 15 13 20 20 H 1.48498 * 109.46685 * 329.99802 * 17 15 13 21 21 C 1.35661 * 121.72503 * 359.52838 * 11 10 9 22 22 C 1.38245 * 126.04786 * 119.71257 * 4 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.07995 * 120.19734 * 359.97438 * 9 8 7 31 31 H 1.08004 * 119.08998 * 180.23352 * 10 9 8 32 32 H 1.08999 * 109.47083 * 29.97566 * 12 11 10 33 33 H 1.09000 * 109.47277 * 149.97060 * 12 11 10 34 34 H 0.96999 * 120.00450 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.23173 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7841 -0.3602 2.4997 6 1 1.2468 0.3999 2.7725 7 7 2.4158 -1.2523 3.3737 8 6 3.0599 -2.1626 2.6662 9 6 3.8545 -3.2858 2.9818 10 6 4.3710 -4.0431 1.9821 11 6 4.1517 -3.7363 0.6371 12 6 4.7629 -4.6136 -0.4248 13 6 6.1300 -4.0906 -0.7830 14 1 6.5174 -3.2105 -0.2911 15 6 6.8863 -4.7354 -1.7385 16 7 8.0793 -4.2787 -2.0515 17 14 6.2160 -6.2571 -2.5898 18 1 5.4702 -5.8542 -3.8090 19 1 7.3417 -7.1480 -2.9699 20 1 5.3034 -6.9788 -1.6672 21 6 3.4024 -2.6694 0.2618 22 6 2.8259 -1.8424 1.2493 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 4.0400 -3.5475 4.0130 31 1 4.9746 -4.9029 2.2328 32 1 4.8510 -5.6325 -0.0479 33 1 4.1279 -4.6077 -1.3108 34 1 8.6112 -4.7321 -2.7240 35 1 3.2481 -2.4547 -0.7853 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260419679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:47 Heat of formation + Delta-G solvation = 48.062012 kcal Electronic energy + Delta-G solvation = -16901.293101 eV Core-core repulsion = 14285.008836 eV Total energy + Delta-G solvation = -2616.284265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34947 -38.69718 -36.48086 -35.03100 -33.07103 -31.94717 -30.82248 -28.48883 -28.07307 -25.52358 -24.05167 -23.14777 -21.75702 -20.39503 -18.90153 -18.55152 -17.31115 -16.70619 -16.08631 -15.95250 -15.53945 -15.32821 -14.87772 -14.46957 -14.40318 -14.01922 -13.69933 -13.42718 -13.11076 -12.81357 -12.72868 -12.33021 -12.21754 -12.12419 -11.88899 -11.80637 -11.76124 -11.51164 -11.15783 -10.92191 -10.72984 -9.59912 -8.34868 -8.23200 -6.28466 -0.27284 0.92701 1.40844 1.42958 1.49259 1.55196 1.79364 2.40633 2.96957 3.10405 3.34589 3.44318 3.80389 4.08193 4.14017 4.27383 4.41007 4.41960 4.57749 4.72177 4.72780 4.86098 4.90227 4.91803 5.08984 5.14370 5.15672 5.28580 5.33274 5.39013 5.52227 5.60029 5.65013 6.01285 6.08037 6.27682 6.34907 6.64118 6.78405 7.34880 8.92687 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.006040 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.585319 B = 4634.936410 C = 5181.726063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.411 5.411 6 H 0.453 0.547 7 N -0.339 5.339 8 C 0.082 3.918 9 C -0.126 4.126 10 C -0.064 4.064 11 C -0.104 4.104 12 C 0.027 3.973 13 C -0.516 4.516 14 H 0.025 0.975 15 C 0.006 3.994 16 N -0.952 5.952 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.244 1.244 21 C -0.057 4.057 22 C -0.222 4.222 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.685 8.508 4.377 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.056 4.056 3 C -0.203 4.203 4 C -0.007 4.007 5 N -0.113 5.113 6 H 0.301 0.699 7 N -0.168 5.168 8 C -0.070 4.070 9 C -0.147 4.147 10 C -0.086 4.086 11 C -0.105 4.105 12 C -0.010 4.010 13 C -0.554 4.554 14 H 0.043 0.957 15 C -0.190 4.190 16 N -0.593 5.593 17 Si 0.773 3.227 18 H -0.189 1.189 19 H -0.211 1.211 20 H -0.167 1.167 21 C -0.078 4.078 22 C -0.231 4.231 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.832 8.887 5.541 20.680 hybrid contribution 0.602 -0.516 -1.000 1.276 sum -17.230 8.371 4.541 19.687 Atomic orbital electron populations 1.21872 0.91465 1.02622 1.04021 1.20110 0.97688 0.96341 0.91440 1.21888 1.00949 0.93410 1.04086 1.21505 0.96433 0.94485 0.88240 1.46039 1.38245 1.24012 1.03010 0.69935 1.77501 1.19538 1.06015 1.13739 1.21132 0.97689 0.95983 0.92168 1.19982 1.00681 0.94046 1.00029 1.20799 0.96784 0.99130 0.91867 1.19536 0.98145 0.97963 0.94856 1.18610 0.93966 0.94960 0.93501 1.21224 1.00719 1.12147 1.21305 0.95655 1.25987 0.94782 1.00964 0.97285 1.70073 1.12527 1.42789 1.33913 0.85656 0.78461 0.79050 0.79511 1.18937 1.21124 1.16717 1.20122 0.96541 0.93273 0.97829 1.19603 1.08622 1.00669 0.94216 0.89242 0.91399 0.92902 0.88598 0.91286 0.93736 0.89143 0.84013 0.85032 0.94983 0.95170 0.92502 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 71.98 0.66 -1.17 16 2 C -0.04 -0.65 3.34 -11.54 -0.04 -0.69 16 3 C -0.15 -2.17 9.17 71.98 0.66 -1.51 16 4 C 0.13 3.52 5.78 42.23 0.24 3.76 16 5 N -0.41 -10.10 7.18 -46.81 -0.34 -10.44 16 6 H 0.45 7.15 8.96 -213.41 -1.91 5.23 16 7 N -0.34 -11.24 12.70 -48.70 -0.62 -11.86 16 8 C 0.08 3.04 7.49 42.17 0.32 3.36 16 9 C -0.13 -4.58 10.08 22.38 0.23 -4.36 16 10 C -0.06 -2.50 9.51 22.02 0.21 -2.29 16 11 C -0.10 -4.47 5.03 -20.11 -0.10 -4.58 16 12 C 0.03 1.28 4.12 29.10 0.12 1.40 16 13 C -0.52 -30.10 9.65 25.60 0.25 -29.85 16 14 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 15 C 0.01 0.37 5.47 84.65 0.46 0.83 16 16 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 17 Si 0.95 43.77 27.47 68.60 1.88 45.65 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 21 C -0.06 -2.27 9.57 22.38 0.21 -2.05 16 22 C -0.22 -7.88 6.25 -20.23 -0.13 -8.01 16 23 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.10 1.94 7.91 -2.39 -0.02 1.93 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.03 1.48 7.13 -2.39 -0.02 1.46 16 33 H 0.03 1.37 7.49 -2.39 -0.02 1.35 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.12 4.55 7.94 -2.91 -0.02 4.53 16 Total: -1.00 -72.93 297.40 3.44 -69.49 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.88 Total: 12.06 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 3.09 Total: -45.15 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -0.66 Total: -82.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -72.93 3.44 -69.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260419679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.552 kcal (2) G-P(sol) polarization free energy of solvation -72.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds