Wall clock time and date at job start Mon Mar 30 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47314 * 2 1 4 4 N 1.30908 * 125.31296 * 270.02001 * 3 2 1 5 5 C 1.33407 * 109.86827 * 179.97438 * 4 3 2 6 6 C 1.37988 * 107.45947 * 0.02562 * 5 4 3 7 7 C 1.40977 * 133.70788 * 180.02562 * 6 5 4 8 8 C 1.35882 * 119.17654 * 179.97438 * 7 6 5 9 9 C 1.40816 * 119.76906 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.68523 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46949 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47103 * 59.99772 * 10 9 8 13 13 C 1.50698 * 109.47294 * 299.99408 * 10 9 8 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46926 * 60.00512 * 17 15 13 19 19 H 1.48506 * 109.46961 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 300.00303 * 17 15 13 21 21 C 1.34669 * 120.61988 * 0.25478 * 9 8 7 22 22 N 1.35038 * 125.31772 * 89.99884 * 3 2 1 23 23 H 1.09006 * 109.47249 * 60.00004 * 1 2 3 24 24 H 1.09001 * 109.47768 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47376 * 300.00681 * 1 2 3 26 26 H 1.08996 * 109.47207 * 239.99859 * 2 1 3 27 27 H 1.09001 * 109.46810 * 119.99840 * 2 1 3 28 28 H 1.07998 * 126.26912 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.41343 * 359.97438 * 7 6 5 30 30 H 1.07999 * 120.11291 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47230 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.47375 * 299.99936 * 12 10 9 33 33 H 1.09000 * 109.47140 * 59.99953 * 12 10 9 34 34 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 35 35 H 1.07997 * 119.71565 * 179.72963 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1343 -1.0682 5 6 2.7125 3.3468 -0.7129 6 6 2.7293 3.3923 0.6661 7 6 3.0798 4.3849 1.6038 8 6 2.9820 4.1071 2.9303 9 6 2.5341 2.8391 3.3479 10 6 2.4270 2.5329 4.8197 11 1 2.0661 1.5130 4.9532 12 6 1.4478 3.5096 5.4739 13 6 3.7827 2.6746 5.4623 14 1 4.6365 2.9584 4.8648 15 6 3.9329 2.4428 6.8131 16 7 2.8932 2.0976 7.5407 17 14 5.6133 2.6191 7.6097 18 1 6.1041 4.0088 7.4274 19 1 5.5074 2.3184 9.0602 20 1 6.5639 1.6711 6.9752 21 6 2.2059 1.8958 2.4446 22 7 2.2925 2.1568 1.1019 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.9944 4.1463 -1.3821 29 1 3.4217 5.3542 1.2719 30 1 3.2470 4.8563 3.6617 31 1 1.3700 3.2879 6.5383 32 1 1.8083 4.5296 5.3403 33 1 0.4672 3.4071 5.0091 34 1 2.9990 1.9342 8.4909 35 1 1.8682 0.9268 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260422352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:57 Heat of formation + Delta-G solvation = 63.710704 kcal Electronic energy + Delta-G solvation = -17191.301667 eV Core-core repulsion = 14575.695980 eV Total energy + Delta-G solvation = -2615.605687 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.34232 -37.59063 -34.29556 -33.84571 -32.30827 -31.33618 -28.50679 -27.29693 -25.27876 -23.86484 -23.10975 -22.02551 -20.89211 -19.46697 -17.08338 -16.31484 -15.92020 -15.45341 -15.17512 -14.72199 -14.41373 -13.80265 -13.53380 -13.26003 -12.80736 -12.44608 -12.04824 -11.76063 -11.62966 -11.32827 -11.13989 -11.06520 -10.99072 -10.79210 -10.47381 -10.28682 -10.11647 -9.95746 -9.71533 -9.22546 -8.52158 -8.34439 -6.93857 -6.15442 -4.23738 1.37686 1.84075 3.09665 3.23197 3.28438 3.31142 3.40936 3.99425 4.32625 4.60748 4.97262 5.03317 5.16109 5.25797 5.35083 5.42916 5.49745 5.56757 5.65356 5.85387 5.90718 5.99819 6.21502 6.32040 6.40588 6.60748 6.66980 6.84442 6.91980 6.96900 7.05127 7.19800 7.53394 7.66142 7.75005 7.92411 8.19477 8.29139 8.78034 9.42177 10.90018 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.006118 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.368802 B = 4575.209660 C = 4901.015085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.030 4.030 3 C 0.143 3.857 4 N -0.458 5.458 5 C -0.044 4.044 6 C 0.005 3.995 7 C -0.104 4.104 8 C -0.085 4.085 9 C -0.038 4.038 10 C 0.081 3.919 11 H 0.038 0.962 12 C -0.133 4.133 13 C -0.514 4.514 14 H 0.058 0.942 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.005 3.995 22 N -0.347 5.347 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.172 0.828 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.010 0.990 34 H 0.263 0.737 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 0.117 -9.594 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.112 4.112 4 N -0.173 5.173 5 C -0.199 4.199 6 C -0.106 4.106 7 C -0.124 4.124 8 C -0.106 4.106 9 C -0.040 4.040 10 C 0.062 3.938 11 H 0.056 0.944 12 C -0.191 4.191 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.114 4.114 22 N -0.016 5.016 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.190 0.810 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.940 -0.390 -10.208 10.630 hybrid contribution 1.109 0.468 1.369 1.823 sum -1.830 0.078 -8.840 9.027 Atomic orbital electron populations 1.21751 0.94416 1.01844 1.02430 1.19823 0.96054 0.87438 1.03604 1.22863 1.11198 0.97223 0.79884 1.69812 1.15473 1.04153 1.27842 1.22287 1.10740 0.96424 0.90493 1.19689 1.08277 0.87344 0.95297 1.20465 1.02143 0.97901 0.91874 1.21199 0.97142 0.97275 0.95009 1.20384 0.93245 0.91842 0.98572 1.17839 0.96514 0.96462 0.83031 0.94438 1.21790 0.95144 0.98076 1.04047 1.20981 0.93100 1.47799 0.93320 0.92395 1.24936 0.96843 0.94725 0.97181 1.69861 1.29250 1.46446 1.07026 0.86601 0.84144 0.78762 0.78227 1.20121 1.21156 1.20211 1.21489 1.08701 1.01923 0.79301 1.42673 1.40861 1.11848 1.06223 0.92147 0.91901 0.92768 0.89161 0.90601 0.81034 0.84416 0.84410 0.89256 0.95023 0.97137 0.92662 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 37.15 0.37 -1.34 16 2 C -0.03 -0.40 6.38 -27.89 -0.18 -0.58 16 3 C 0.14 2.45 7.21 -155.08 -1.12 1.33 16 4 N -0.46 -8.24 11.20 -10.11 -0.11 -8.35 16 5 C -0.04 -0.75 12.02 -16.96 -0.20 -0.95 16 6 C 0.00 0.09 6.80 -84.09 -0.57 -0.49 16 7 C -0.10 -1.72 10.11 -39.39 -0.40 -2.12 16 8 C -0.09 -1.57 8.73 -39.45 -0.34 -1.91 16 9 C -0.04 -0.76 4.69 -104.91 -0.49 -1.25 16 10 C 0.08 1.86 2.46 -92.92 -0.23 1.63 16 11 H 0.04 0.92 7.80 -51.93 -0.41 0.51 16 12 C -0.13 -2.96 8.78 37.16 0.33 -2.64 16 13 C -0.51 -13.10 8.24 -34.44 -0.28 -13.38 16 14 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 15 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -23.82 11.32 55.43 0.63 -23.19 16 17 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.00 0.08 10.41 -16.48 -0.17 -0.09 16 22 N -0.35 -6.35 2.94 -58.16 -0.17 -6.53 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 28 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.14 2.46 7.60 -52.49 -0.40 2.07 16 31 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 32 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.16 2.65 7.78 -52.49 -0.41 2.24 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -28.34 294.77 -8.45 -36.79 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.82 Total: 1.76 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.39 Total: -20.19 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.34 Total: -38.07 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.34 -8.45 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260422352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.498 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds