Wall clock time and date at job start Mon Mar 30 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 109.47314 * 2 1 4 4 N 1.30908 * 125.31296 * 270.02001 * 3 2 1 5 5 C 1.33407 * 109.86827 * 179.97438 * 4 3 2 6 6 C 1.37988 * 107.45947 * 0.02562 * 5 4 3 7 7 C 1.40977 * 133.70788 * 180.02562 * 6 5 4 8 8 C 1.35882 * 119.17654 * 179.97438 * 7 6 5 9 9 C 1.40816 * 119.76906 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.68523 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.46949 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47103 * 59.99772 * 10 9 8 13 13 C 1.50698 * 109.47294 * 299.99408 * 10 9 8 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99944 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46926 * 60.00512 * 17 15 13 19 19 H 1.48506 * 109.46961 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 300.00303 * 17 15 13 21 21 C 1.34669 * 120.61988 * 0.25478 * 9 8 7 22 22 N 1.35038 * 125.31772 * 89.99884 * 3 2 1 23 23 H 1.09006 * 109.47249 * 60.00004 * 1 2 3 24 24 H 1.09001 * 109.47768 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47376 * 300.00681 * 1 2 3 26 26 H 1.08996 * 109.47207 * 239.99859 * 2 1 3 27 27 H 1.09001 * 109.46810 * 119.99840 * 2 1 3 28 28 H 1.07998 * 126.26912 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.41343 * 359.97438 * 7 6 5 30 30 H 1.07999 * 120.11291 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47230 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.47375 * 299.99936 * 12 10 9 33 33 H 1.09000 * 109.47140 * 59.99953 * 12 10 9 34 34 H 0.96997 * 119.99752 * 179.97438 * 16 15 13 35 35 H 1.07997 * 119.71565 * 179.72963 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2842 2.1343 -1.0682 5 6 2.7125 3.3468 -0.7129 6 6 2.7293 3.3923 0.6661 7 6 3.0798 4.3849 1.6038 8 6 2.9820 4.1071 2.9303 9 6 2.5341 2.8391 3.3479 10 6 2.4270 2.5329 4.8197 11 1 2.0661 1.5130 4.9532 12 6 1.4478 3.5096 5.4739 13 6 3.7827 2.6746 5.4623 14 1 4.6365 2.9584 4.8648 15 6 3.9329 2.4428 6.8131 16 7 2.8932 2.0976 7.5407 17 14 5.6133 2.6191 7.6097 18 1 6.1041 4.0088 7.4274 19 1 5.5074 2.3184 9.0602 20 1 6.5639 1.6711 6.9752 21 6 2.2059 1.8958 2.4446 22 7 2.2925 2.1568 1.1019 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 2.9944 4.1463 -1.3821 29 1 3.4217 5.3542 1.2719 30 1 3.2470 4.8563 3.6617 31 1 1.3700 3.2879 6.5383 32 1 1.8083 4.5296 5.3403 33 1 0.4672 3.4071 5.0091 34 1 2.9990 1.9342 8.4909 35 1 1.8682 0.9268 2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260422352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:55 Heat of formation + Delta-G solvation = 50.794868 kcal Electronic energy + Delta-G solvation = -17191.861739 eV Core-core repulsion = 14575.695980 eV Total energy + Delta-G solvation = -2616.165759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.68365 -39.06089 -35.98035 -35.06020 -33.70396 -32.96872 -30.07237 -28.59855 -27.22650 -25.01690 -24.63033 -23.35815 -22.34872 -20.97180 -18.62321 -17.89044 -17.46311 -16.85710 -16.81239 -16.15670 -15.74867 -15.09370 -14.76629 -14.65072 -14.41089 -13.76465 -13.59639 -13.36057 -13.04935 -12.84483 -12.74285 -12.45131 -12.38021 -12.21415 -12.08923 -12.00194 -11.58102 -11.49465 -11.22222 -11.06675 -10.48913 -9.84313 -8.29327 -8.11231 -6.26289 0.00610 0.44454 1.43311 1.44238 1.51372 1.75906 2.08429 2.41325 2.62228 3.16442 3.44870 3.63324 3.80734 4.00802 4.15200 4.24084 4.31393 4.35548 4.43544 4.74080 4.76596 4.85045 4.94932 4.95921 5.07895 5.16536 5.19209 5.27033 5.32015 5.40046 5.58299 5.66660 5.81653 5.89990 6.02376 6.28827 6.33342 6.80773 6.96028 7.42168 8.91909 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.006118 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.368802 B = 4575.209660 C = 4901.015085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 C 0.142 3.858 4 N -0.479 5.479 5 C -0.036 4.036 6 C -0.025 4.025 7 C -0.081 4.081 8 C -0.111 4.111 9 C -0.053 4.053 10 C 0.083 3.917 11 H 0.014 0.986 12 C -0.123 4.123 13 C -0.524 4.524 14 H 0.052 0.948 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 0.951 3.049 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.276 1.276 21 C 0.003 3.997 22 N -0.358 5.358 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.204 0.796 29 H 0.176 0.824 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 0.430 -11.062 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.112 4.112 4 N -0.194 5.194 5 C -0.191 4.191 6 C -0.134 4.134 7 C -0.100 4.100 8 C -0.132 4.132 9 C -0.056 4.056 10 C 0.064 3.936 11 H 0.032 0.968 12 C -0.181 4.181 13 C -0.562 4.562 14 H 0.071 0.929 15 C -0.179 4.179 16 N -0.552 5.552 17 Si 0.777 3.223 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.202 1.202 21 C -0.116 4.116 22 N -0.027 5.027 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.221 0.779 29 H 0.193 0.807 30 H 0.156 0.844 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.481 -0.065 -11.682 11.942 hybrid contribution 0.937 0.338 1.673 1.947 sum -1.545 0.273 -10.008 10.131 Atomic orbital electron populations 1.21703 0.93191 1.03363 1.01496 1.20046 0.97032 0.85511 1.04672 1.23666 1.09775 0.98376 0.79425 1.69889 1.16488 1.04870 1.28155 1.22906 1.08851 0.96715 0.90583 1.20127 1.09504 0.87719 0.96096 1.20816 0.99562 0.98907 0.90718 1.21167 0.99225 0.96763 0.96043 1.20118 0.95089 0.93319 0.97032 1.17656 0.95494 0.95218 0.85268 0.96835 1.21627 0.95902 0.98185 1.02337 1.21248 0.94067 1.47272 0.93572 0.92939 1.25624 0.99797 0.94686 0.97796 1.69980 1.30805 1.47349 1.07104 0.85714 0.80464 0.78819 0.77296 1.19462 1.20948 1.20178 1.21465 1.08468 1.01969 0.79669 1.42802 1.41398 1.12470 1.06074 0.92632 0.89202 0.94057 0.87696 0.89883 0.77908 0.80708 0.84446 0.91844 0.94449 0.95674 0.92769 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.89 71.98 0.71 -2.29 16 2 C -0.03 -0.83 6.38 29.84 0.19 -0.64 16 3 C 0.14 4.65 7.21 138.01 1.00 5.64 16 4 N -0.48 -16.22 11.20 -185.91 -2.08 -18.30 16 5 C -0.04 -1.11 12.02 84.39 1.01 -0.10 16 6 C -0.02 -0.83 6.80 38.77 0.26 -0.57 16 7 C -0.08 -2.50 10.11 22.39 0.23 -2.27 16 8 C -0.11 -4.01 8.73 22.35 0.20 -3.81 16 9 C -0.05 -2.14 4.69 -20.05 -0.09 -2.23 16 10 C 0.08 3.89 2.46 -12.29 -0.03 3.86 16 11 H 0.01 0.69 7.80 -2.39 -0.02 0.67 16 12 C -0.12 -5.55 8.78 71.98 0.63 -4.92 16 13 C -0.52 -27.00 8.24 25.60 0.21 -26.79 16 14 H 0.05 2.70 7.60 -2.91 -0.02 2.68 16 15 C 0.02 1.07 5.30 84.65 0.45 1.52 16 16 N -0.91 -49.85 11.32 21.45 0.24 -49.61 16 17 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 C 0.00 0.11 10.41 83.06 0.86 0.97 16 22 N -0.36 -12.69 2.94 -337.92 -0.99 -13.68 16 23 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.08 1.92 8.03 -2.39 -0.02 1.90 16 28 H 0.20 4.75 8.06 -2.91 -0.02 4.72 16 29 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.14 4.86 7.60 -2.91 -0.02 4.84 16 31 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 32 H 0.04 1.59 7.39 -2.39 -0.02 1.57 16 33 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 35 H 0.16 5.61 7.78 -2.91 -0.02 5.58 16 Total: -1.00 -60.11 294.77 5.89 -54.21 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.07 Total: 15.31 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 5.63 Total: -31.63 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -2.83 Total: -81.60 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -60.11 5.89 -54.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260422352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.009 kcal (2) G-P(sol) polarization free energy of solvation -60.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds