Wall clock time and date at job start Mon Mar 30 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 C 1.50701 * 109.46815 * 119.99509 * 2 1 3 5 5 N 1.33983 * 126.04821 * 300.02680 * 4 2 1 6 6 H 0.96996 * 125.02042 * 0.26466 * 5 4 2 7 7 N 1.39965 * 109.95624 * 179.97438 * 5 4 2 8 8 C 1.32059 * 108.95970 * 359.97438 * 7 5 4 9 9 C 1.41155 * 134.68169 * 179.97438 * 8 7 5 10 10 C 1.35634 * 119.59649 * 180.02562 * 9 8 7 11 11 C 1.50702 * 119.09223 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46930 * 269.99906 * 11 10 9 13 13 H 1.08005 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99951 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00114 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47167 * 89.99964 * 16 14 12 18 18 H 1.48500 * 109.47263 * 210.00199 * 16 14 12 19 19 H 1.48504 * 109.47394 * 330.00289 * 16 14 12 20 20 C 1.39686 * 121.81484 * 359.97438 * 10 9 8 21 21 C 1.35652 * 121.73055 * 0.02562 * 20 10 9 22 22 C 1.38249 * 126.04705 * 120.02773 * 4 2 1 23 23 H 1.08992 * 109.47270 * 300.00375 * 1 2 3 24 24 H 1.09001 * 109.46703 * 60.00616 * 1 2 3 25 25 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47558 * 239.99113 * 2 1 3 27 27 H 1.08992 * 109.47230 * 59.99601 * 3 2 1 28 28 H 1.09003 * 109.47267 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46705 * 299.99383 * 3 2 1 30 30 H 1.08000 * 120.20110 * 359.97438 * 9 8 7 31 31 H 1.08999 * 109.47001 * 29.99607 * 11 10 9 32 32 H 1.08996 * 109.47210 * 149.99827 * 11 10 9 33 33 H 0.97002 * 120.00300 * 180.02562 * 15 14 12 34 34 H 1.08004 * 119.13227 * 179.97438 * 20 10 9 35 35 H 1.07994 * 120.23695 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 7 1.7839 -0.3600 2.4997 6 1 1.2432 0.3977 2.7724 7 7 2.4147 -1.2527 3.3739 8 6 3.0582 -2.1634 2.6664 9 6 3.8525 -3.2868 2.9822 10 6 4.3818 -4.0352 1.9826 11 6 5.2276 -5.2324 2.3326 12 6 6.6698 -4.8115 2.4499 13 1 6.9463 -3.7802 2.2876 14 6 7.6363 -5.7429 2.7654 15 7 8.8949 -5.3755 2.8682 16 14 7.1578 -7.5262 3.0482 17 1 7.2189 -8.2652 1.7614 18 1 8.0978 -8.1431 4.0183 19 1 5.7764 -7.5883 3.5895 20 6 4.1638 -3.7276 0.6376 21 6 3.4112 -2.6632 0.2621 22 6 2.8307 -1.8387 1.2496 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 4.0382 -3.5482 4.0135 31 1 4.8923 -5.6489 3.2825 32 1 5.1314 -5.9862 1.5512 33 1 9.5749 -6.0308 3.0898 34 1 4.6067 -4.3531 -0.1234 35 1 3.2580 -2.4478 -0.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:02 Heat of formation + Delta-G solvation = 68.295483 kcal Electronic energy + Delta-G solvation = -16765.464720 eV Core-core repulsion = 14150.057844 eV Total energy + Delta-G solvation = -2615.406876 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.07008 -37.29077 -35.53285 -33.09721 -31.36925 -30.95803 -28.28785 -27.68529 -27.50234 -24.02082 -22.47598 -21.81329 -20.29248 -19.18106 -17.12848 -16.72565 -16.28193 -15.38290 -14.78535 -14.53247 -14.13712 -14.08386 -13.60762 -13.28620 -13.05238 -12.58268 -12.46948 -11.91275 -11.67752 -11.55545 -11.48028 -11.30914 -11.11899 -10.98645 -10.47755 -10.10271 -9.96375 -9.75325 -9.72722 -9.32113 -8.53901 -7.93143 -7.07197 -6.02870 -4.01757 1.07104 2.38694 2.85058 2.92525 3.32447 3.40355 3.43818 4.31141 4.45332 4.45847 4.53437 4.74926 4.81366 5.08002 5.23585 5.29691 5.35887 5.42030 5.44877 5.65282 5.72005 5.83386 5.90833 5.91111 5.97649 6.20371 6.39113 6.67704 6.94369 7.00930 7.06645 7.09707 7.35190 7.48522 7.65328 7.73715 8.03043 8.54203 9.03232 9.57261 11.10167 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.004898 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.744634 B = 5715.218585 C = 5797.773428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 C -0.148 4.148 4 C 0.104 3.896 5 N -0.434 5.434 6 H 0.433 0.567 7 N -0.320 5.320 8 C 0.120 3.880 9 C -0.127 4.127 10 C 0.009 3.991 11 C 0.012 3.988 12 C -0.511 4.511 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.125 4.125 21 C -0.067 4.067 22 C -0.201 4.201 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.122 0.878 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.839 10.427 -7.127 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 C -0.206 4.206 4 C -0.034 4.034 5 N -0.134 5.134 6 H 0.276 0.724 7 N -0.148 5.148 8 C -0.033 4.033 9 C -0.148 4.148 10 C 0.004 3.996 11 C -0.025 4.025 12 C -0.549 4.549 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.188 1.188 20 C -0.145 4.145 21 C -0.087 4.087 22 C -0.211 4.211 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.932 10.759 -5.834 20.893 hybrid contribution -0.064 -0.722 -0.399 0.828 sum -16.997 10.037 -6.234 20.700 Atomic orbital electron populations 1.21881 0.93840 1.02666 1.02135 1.19880 0.95911 0.95790 0.93668 1.21886 1.02144 0.94473 1.02113 1.20952 0.99105 0.96269 0.87075 1.46079 1.39305 1.24484 1.03506 0.72391 1.77654 1.19046 1.05429 1.12661 1.21003 0.96190 0.94931 0.91173 1.19681 1.01016 0.94206 0.99935 1.19774 0.91571 0.96216 0.91988 1.18892 0.95241 0.91301 0.97079 1.20926 0.88572 0.97477 1.47932 0.90731 1.24987 0.94770 0.98745 0.94716 1.69902 1.00477 1.34676 1.48876 0.86813 0.78936 0.85376 0.78463 1.20159 1.21307 1.18831 1.20617 0.99468 0.98129 0.96263 1.20099 0.97469 0.94330 0.96806 1.19311 1.07550 0.99367 0.94889 0.92880 0.91496 0.91883 0.88270 0.92875 0.91739 0.91485 0.85742 0.95183 0.95561 0.92639 0.86026 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.17 37.16 0.34 -0.71 16 2 C -0.03 -0.29 3.34 -91.77 -0.31 -0.59 16 3 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 4 C 0.10 1.38 5.78 -81.65 -0.47 0.91 16 5 N -0.43 -5.88 7.18 33.85 0.24 -5.64 16 6 H 0.43 4.18 8.96 -182.70 -1.64 2.54 16 7 N -0.32 -5.86 12.70 33.25 0.42 -5.43 16 8 C 0.12 2.37 7.49 -83.06 -0.62 1.75 16 9 C -0.13 -2.71 9.65 -39.41 -0.38 -3.09 16 10 C 0.01 0.20 5.03 -105.01 -0.53 -0.33 16 11 C 0.01 0.29 4.12 -29.03 -0.12 0.17 16 12 C -0.51 -14.62 9.65 -34.44 -0.33 -14.96 16 13 H 0.07 2.35 7.98 -52.48 -0.42 1.93 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 16 Si 0.88 21.44 27.47 -169.99 -4.67 16.78 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 20 C -0.13 -2.38 9.51 -39.97 -0.38 -2.76 16 21 C -0.07 -1.10 10.00 -39.41 -0.39 -1.50 16 22 C -0.20 -3.45 6.25 -105.19 -0.66 -4.10 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.10 0.85 7.91 -51.93 -0.41 0.44 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 31 H 0.03 0.72 7.11 -51.93 -0.37 0.35 16 32 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 35 H 0.11 1.49 7.94 -52.49 -0.42 1.07 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -33.20 297.39 -8.55 -41.75 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.19 Total: -0.82 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -3.61 Total: -24.09 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 1.44 Total: -38.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.20 -8.55 -41.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.041 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds