Wall clock time and date at job start Mon Mar 30 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47369 * 2 1 4 4 C 1.50701 * 109.46815 * 119.99509 * 2 1 3 5 5 N 1.33983 * 126.04821 * 300.02680 * 4 2 1 6 6 H 0.96996 * 125.02042 * 0.26466 * 5 4 2 7 7 N 1.39965 * 109.95624 * 179.97438 * 5 4 2 8 8 C 1.32059 * 108.95970 * 359.97438 * 7 5 4 9 9 C 1.41155 * 134.68169 * 179.97438 * 8 7 5 10 10 C 1.35634 * 119.59649 * 180.02562 * 9 8 7 11 11 C 1.50702 * 119.09223 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.46930 * 269.99906 * 11 10 9 13 13 H 1.08005 * 120.00094 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99854 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99951 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 120.00114 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47167 * 89.99964 * 16 14 12 18 18 H 1.48500 * 109.47263 * 210.00199 * 16 14 12 19 19 H 1.48504 * 109.47394 * 330.00289 * 16 14 12 20 20 C 1.39686 * 121.81484 * 359.97438 * 10 9 8 21 21 C 1.35652 * 121.73055 * 0.02562 * 20 10 9 22 22 C 1.38249 * 126.04705 * 120.02773 * 4 2 1 23 23 H 1.08992 * 109.47270 * 300.00375 * 1 2 3 24 24 H 1.09001 * 109.46703 * 60.00616 * 1 2 3 25 25 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47558 * 239.99113 * 2 1 3 27 27 H 1.08992 * 109.47230 * 59.99601 * 3 2 1 28 28 H 1.09003 * 109.47267 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46705 * 299.99383 * 3 2 1 30 30 H 1.08000 * 120.20110 * 359.97438 * 9 8 7 31 31 H 1.08999 * 109.47001 * 29.99607 * 11 10 9 32 32 H 1.08996 * 109.47210 * 149.99827 * 11 10 9 33 33 H 0.97002 * 120.00300 * 180.02562 * 15 14 12 34 34 H 1.08004 * 119.13227 * 179.97438 * 20 10 9 35 35 H 1.07994 * 120.23695 * 180.02562 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 7 1.7839 -0.3600 2.4997 6 1 1.2432 0.3977 2.7724 7 7 2.4147 -1.2527 3.3739 8 6 3.0582 -2.1634 2.6664 9 6 3.8525 -3.2868 2.9822 10 6 4.3818 -4.0352 1.9826 11 6 5.2276 -5.2324 2.3326 12 6 6.6698 -4.8115 2.4499 13 1 6.9463 -3.7802 2.2876 14 6 7.6363 -5.7429 2.7654 15 7 8.8949 -5.3755 2.8682 16 14 7.1578 -7.5262 3.0482 17 1 7.2189 -8.2652 1.7614 18 1 8.0978 -8.1431 4.0183 19 1 5.7764 -7.5883 3.5895 20 6 4.1638 -3.7276 0.6376 21 6 3.4112 -2.6632 0.2621 22 6 2.8307 -1.8387 1.2496 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5140 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 4.0382 -3.5482 4.0135 31 1 4.8923 -5.6489 3.2825 32 1 5.1314 -5.9862 1.5512 33 1 9.5749 -6.0308 3.0898 34 1 4.6067 -4.3531 -0.1234 35 1 3.2580 -2.4478 -0.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:00 Heat of formation + Delta-G solvation = 47.053207 kcal Electronic energy + Delta-G solvation = -16766.385854 eV Core-core repulsion = 14150.057844 eV Total energy + Delta-G solvation = -2616.328010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34752 -38.72929 -36.40699 -35.11899 -33.09109 -32.30242 -29.79652 -29.25764 -28.04831 -25.69021 -23.82981 -23.01910 -21.88997 -20.40282 -18.94919 -18.29283 -17.59357 -16.69234 -16.09725 -15.94976 -15.59433 -15.27574 -14.94899 -14.63534 -14.17702 -13.99509 -13.61827 -13.44498 -13.08812 -12.82602 -12.73999 -12.33625 -12.19428 -12.15758 -11.91540 -11.81649 -11.74052 -11.53023 -11.13877 -11.06019 -10.76239 -9.41952 -8.47022 -8.27591 -6.32863 -0.24404 0.92888 1.38774 1.41476 1.49735 1.53603 1.81538 2.38208 2.97017 3.06674 3.34448 3.43934 3.81830 4.08032 4.16054 4.30087 4.38049 4.43592 4.57779 4.72700 4.74976 4.85402 4.93147 4.94670 5.05672 5.12435 5.14305 5.31157 5.35542 5.36772 5.53253 5.58241 5.65208 6.02307 6.04863 6.29029 6.29791 6.66042 6.73430 7.30232 8.89204 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.044241 B = 0.004898 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.744634 B = 5715.218585 C = 5797.773428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C -0.148 4.148 4 C 0.145 3.855 5 N -0.415 5.415 6 H 0.452 0.548 7 N -0.356 5.356 8 C 0.095 3.905 9 C -0.154 4.154 10 C -0.005 4.005 11 C 0.018 3.982 12 C -0.519 4.519 13 H 0.026 0.974 14 C 0.008 3.992 15 N -0.950 5.950 16 Si 0.952 3.048 17 H -0.259 1.259 18 H -0.284 1.284 19 H -0.248 1.248 20 C -0.165 4.165 21 C -0.032 4.032 22 C -0.236 4.236 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.268 0.732 34 H 0.130 0.870 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 11.281 -9.182 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 C -0.205 4.205 4 C 0.005 3.995 5 N -0.116 5.116 6 H 0.299 0.701 7 N -0.185 5.185 8 C -0.057 4.057 9 C -0.176 4.176 10 C -0.009 4.009 11 C -0.019 4.019 12 C -0.557 4.557 13 H 0.044 0.956 14 C -0.189 4.189 15 N -0.591 5.591 16 Si 0.775 3.225 17 H -0.183 1.183 18 H -0.209 1.209 19 H -0.171 1.171 20 C -0.185 4.185 21 C -0.052 4.052 22 C -0.245 4.245 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.755 11.636 -7.873 24.242 hybrid contribution 0.700 -0.696 0.191 1.006 sum -19.055 10.940 -7.682 23.276 Atomic orbital electron populations 1.21894 0.91810 1.02681 1.03911 1.20163 0.97400 0.96249 0.91328 1.21910 1.01179 0.93500 1.03954 1.21707 0.95497 0.94084 0.88249 1.46118 1.38090 1.24016 1.03355 0.70070 1.77583 1.20471 1.06445 1.13963 1.20990 0.96592 0.94951 0.93183 1.19596 1.02960 0.95928 0.99088 1.19695 0.91836 0.95672 0.93700 1.18756 0.92841 0.92945 0.97387 1.21114 0.91389 0.95443 1.47744 0.95590 1.25981 0.94421 1.04263 0.94194 1.70062 1.01952 1.36703 1.50367 0.85631 0.79258 0.78544 0.79112 1.18350 1.20946 1.17132 1.20658 1.02319 1.00454 0.95026 1.20505 0.94005 0.91917 0.98790 1.19690 1.09685 1.01378 0.93784 0.92067 0.88937 0.92767 0.87024 0.92044 0.93306 0.88829 0.87596 0.95371 0.94090 0.92336 0.85196 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.17 71.98 0.66 -0.71 16 2 C -0.03 -0.42 3.34 -11.54 -0.04 -0.46 16 3 C -0.15 -1.59 9.18 71.98 0.66 -0.93 16 4 C 0.15 3.45 5.78 42.23 0.24 3.70 16 5 N -0.41 -10.38 7.18 -46.81 -0.34 -10.72 16 6 H 0.45 7.41 8.96 -213.41 -1.91 5.50 16 7 N -0.36 -13.06 12.70 -48.70 -0.62 -13.68 16 8 C 0.09 3.83 7.49 42.16 0.32 4.15 16 9 C -0.15 -6.98 9.65 22.38 0.22 -6.77 16 10 C 0.00 -0.21 5.03 -20.12 -0.10 -0.31 16 11 C 0.02 0.89 4.12 29.10 0.12 1.01 16 12 C -0.52 -31.18 9.65 25.60 0.25 -30.94 16 13 H 0.03 1.75 7.98 -2.91 -0.02 1.73 16 14 C 0.01 0.49 5.47 84.65 0.46 0.95 16 15 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 16 Si 0.95 44.75 27.47 68.60 1.88 46.64 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 20 C -0.17 -6.31 9.51 22.02 0.21 -6.10 16 21 C -0.03 -1.01 10.00 22.38 0.22 -0.79 16 22 C -0.24 -7.75 6.25 -20.23 -0.13 -7.87 16 23 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.11 1.33 7.91 -2.39 -0.02 1.31 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.03 1.39 7.11 -2.39 -0.02 1.37 16 32 H 0.04 1.89 7.50 -2.39 -0.02 1.88 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.16 3.45 7.94 -2.91 -0.02 3.43 16 Total: -1.00 -77.05 297.39 3.44 -73.61 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -0.88 Total: 9.80 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 3.09 Total: -45.06 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -0.66 Total: -84.99 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -77.05 3.44 -73.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.662 kcal (2) G-P(sol) polarization free energy of solvation -77.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds