Wall clock time and date at job start Mon Mar 30 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46921 * 2 1 4 4 C 1.50700 * 109.47331 * 120.00137 * 2 1 3 5 5 N 1.30207 * 126.15948 * 300.02542 * 4 2 1 6 6 N 1.39823 * 110.15654 * 179.97438 * 5 4 2 7 7 C 1.46496 * 125.38623 * 180.02562 * 6 5 4 8 8 C 1.36760 * 109.22664 * 359.97438 * 6 5 4 9 9 C 1.39870 * 133.41825 * 179.97438 * 8 6 5 10 10 C 1.35855 * 120.35234 * 179.25486 * 9 8 6 11 11 C 1.41231 * 120.58081 * 0.64624 * 10 9 8 12 12 C 1.41333 * 120.03282 * 179.57084 * 11 10 9 13 13 H 1.08002 * 119.99857 * 334.44610 * 12 11 10 14 14 C 1.39868 * 120.00017 * 154.45231 * 12 11 10 15 15 N 1.30884 * 119.99905 * 343.13955 * 14 12 11 16 16 Si 1.86801 * 120.00135 * 163.14683 * 14 12 11 17 17 H 1.48503 * 109.47104 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47092 * 119.99279 * 16 14 12 19 19 H 1.48492 * 109.47326 * 239.99496 * 16 14 12 20 20 C 1.40231 * 119.93055 * 359.59165 * 11 10 9 21 21 C 1.39367 * 119.30872 * 0.02562 * 20 11 10 22 22 H 1.09002 * 109.47174 * 299.99601 * 1 2 3 23 23 H 1.09008 * 109.46687 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47506 * 59.99907 * 1 2 3 25 25 H 1.09005 * 109.46963 * 239.99917 * 2 1 3 26 26 H 1.08996 * 109.47529 * 60.00154 * 3 2 1 27 27 H 1.09001 * 109.47481 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47287 * 300.00160 * 3 2 1 29 29 H 1.08998 * 109.47504 * 90.01672 * 7 6 5 30 30 H 1.09003 * 109.47466 * 210.02038 * 7 6 5 31 31 H 1.09007 * 109.47055 * 330.01851 * 7 6 5 32 32 H 1.08004 * 119.82065 * 0.02562 * 9 8 6 33 33 H 1.07996 * 119.70538 * 180.21366 * 10 9 8 34 34 H 0.97001 * 119.99848 * 180.02562 * 15 14 12 35 35 H 1.08004 * 120.34337 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7926 -0.3721 2.4647 6 7 2.4220 -1.2629 3.3395 7 6 2.3718 -1.1937 4.8019 8 6 3.0910 -2.2096 2.6139 9 6 3.8727 -3.3151 2.9650 10 6 4.4135 -4.1069 2.0027 11 6 4.2067 -3.8193 0.6355 12 6 4.7823 -4.6457 -0.3561 13 1 5.6739 -5.2136 -0.1350 14 6 4.1972 -4.7280 -1.6239 15 7 2.9659 -4.3225 -1.8039 16 14 5.1731 -5.4169 -3.0600 17 1 6.5305 -5.8018 -2.5968 18 1 4.4778 -6.6113 -3.6034 19 1 5.2870 -4.3848 -4.1216 20 6 3.4301 -2.7127 0.2630 21 6 2.8706 -1.9075 1.2533 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.5206 -1.7703 5.1640 30 1 3.2920 -1.6048 5.2170 31 1 2.2653 -0.1545 5.1131 32 1 4.0370 -3.5475 4.0069 33 1 5.0125 -4.9598 2.2856 34 1 2.5600 -4.3799 -2.6831 35 1 3.2673 -2.4868 -0.7806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260447868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:06 Heat of formation + Delta-G solvation = 63.846270 kcal Electronic energy + Delta-G solvation = -17316.922174 eV Core-core repulsion = 14701.322366 eV Total energy + Delta-G solvation = -2615.599808 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.03492 -36.25686 -35.18334 -33.17422 -31.64381 -29.23692 -28.75920 -26.75386 -26.14106 -24.54966 -22.15474 -21.08082 -20.46378 -18.10691 -17.29750 -15.98545 -15.43402 -14.70020 -14.61236 -14.17135 -13.71217 -13.49625 -12.98794 -12.91353 -12.55414 -12.19837 -12.06945 -11.80944 -11.66528 -11.25656 -11.09348 -10.96289 -10.84029 -10.64083 -10.56197 -10.15612 -10.04766 -9.65548 -9.36428 -9.11079 -8.56351 -7.41694 -6.73423 -6.64289 -4.19024 2.23775 2.81709 3.12763 3.17354 3.22117 3.34721 3.57139 4.00626 4.64452 5.09880 5.24987 5.41589 5.54106 5.65298 5.70617 5.79002 5.81461 5.92581 5.97471 6.04241 6.19152 6.20796 6.33858 6.45299 6.61531 6.64792 6.83569 6.92503 7.04891 7.24989 7.45242 7.55299 7.76167 7.96792 8.15802 8.23487 8.55383 8.75114 8.94304 8.96728 10.30825 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.008090 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.216187 B = 3460.333510 C = 4490.998691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.138 4.138 4 C 0.083 3.917 5 N -0.273 5.273 6 N -0.426 5.426 7 C 0.126 3.874 8 C 0.032 3.968 9 C -0.132 4.132 10 C -0.141 4.141 11 C 0.076 3.924 12 C -0.465 4.465 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.802 5.802 16 Si 0.904 3.096 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.273 1.273 20 C -0.114 4.114 21 C -0.133 4.133 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.277 0.723 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 5.580 3.210 6.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.196 4.196 4 C -0.095 4.095 5 N -0.087 5.087 6 N -0.219 5.219 7 C -0.016 4.016 8 C -0.077 4.077 9 C -0.154 4.154 10 C -0.162 4.162 11 C 0.073 3.927 12 C -0.496 4.496 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.429 5.429 16 Si 0.729 3.271 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.198 1.198 20 C -0.137 4.137 21 C -0.140 4.140 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.402 6.391 3.996 7.911 hybrid contribution 0.749 -1.080 -0.919 1.604 sum -1.653 5.311 3.077 6.357 Atomic orbital electron populations 1.21777 0.94483 1.02031 1.01302 1.19485 0.95415 0.94862 0.93204 1.21792 1.01179 0.95250 1.01419 1.23192 0.98279 0.95467 0.92523 1.76051 1.17562 1.14723 1.00314 1.47377 1.46482 1.23951 1.04091 1.21349 1.01597 1.02246 0.76449 1.18451 1.02620 0.95545 0.91053 1.19282 1.02613 0.95661 0.97849 1.20797 1.03095 0.99105 0.93240 1.17397 0.92632 0.91686 0.91012 1.19402 1.10712 1.24150 0.95349 0.90621 1.25789 0.94252 0.94106 0.99958 1.69840 1.11304 1.37545 1.24174 0.86339 0.80897 0.78972 0.80935 1.18610 1.20215 1.19849 1.20790 1.01638 0.93849 0.97382 1.19716 1.03614 0.97519 0.93116 0.92614 0.92502 0.92624 0.89197 0.92531 0.92711 0.92604 0.93007 0.90986 0.91040 0.88895 0.87896 0.91167 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 37.16 0.34 -1.81 16 2 C -0.01 -0.16 3.36 -91.77 -0.31 -0.47 16 3 C -0.14 -2.09 9.17 37.16 0.34 -1.74 16 4 C 0.08 1.80 5.95 -80.11 -0.48 1.33 16 5 N -0.27 -5.85 12.39 34.88 0.43 -5.41 16 6 N -0.43 -8.97 4.04 -65.29 -0.26 -9.23 16 7 C 0.13 1.95 11.38 59.84 0.68 2.63 16 8 C 0.03 0.76 6.87 -83.97 -0.58 0.18 16 9 C -0.13 -2.95 9.89 -39.83 -0.39 -3.34 16 10 C -0.14 -3.35 9.69 -39.30 -0.38 -3.73 16 11 C 0.08 1.99 5.57 -106.83 -0.59 1.39 16 12 C -0.47 -12.16 9.04 -37.80 -0.34 -12.50 16 13 H 0.08 1.90 7.90 -52.49 -0.41 1.48 16 14 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 15 N -0.80 -20.62 10.96 55.54 0.61 -20.01 16 16 Si 0.90 18.64 29.59 -169.99 -5.03 13.61 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.11 -2.98 8.75 -38.41 -0.34 -3.31 16 21 C -0.13 -3.28 6.31 -105.22 -0.66 -3.94 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 35 H 0.13 3.34 6.19 -52.48 -0.32 3.01 16 LS Contribution 298.48 15.07 4.50 4.50 Total: -1.00 -29.11 298.48 -7.50 -36.61 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.95 Total: 3.48 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.80 Total: -23.54 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.78 Total: -34.66 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.11 -7.50 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.453 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds