Wall clock time and date at job start Mon Mar 30 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46921 * 2 1 4 4 C 1.50700 * 109.47331 * 120.00137 * 2 1 3 5 5 N 1.30207 * 126.15948 * 300.02542 * 4 2 1 6 6 N 1.39823 * 110.15654 * 179.97438 * 5 4 2 7 7 C 1.46496 * 125.38623 * 180.02562 * 6 5 4 8 8 C 1.36760 * 109.22664 * 359.97438 * 6 5 4 9 9 C 1.39870 * 133.41825 * 179.97438 * 8 6 5 10 10 C 1.35855 * 120.35234 * 179.25486 * 9 8 6 11 11 C 1.41231 * 120.58081 * 0.64624 * 10 9 8 12 12 C 1.41333 * 120.03282 * 179.57084 * 11 10 9 13 13 H 1.08002 * 119.99857 * 334.44610 * 12 11 10 14 14 C 1.39868 * 120.00017 * 154.45231 * 12 11 10 15 15 N 1.30884 * 119.99905 * 343.13955 * 14 12 11 16 16 Si 1.86801 * 120.00135 * 163.14683 * 14 12 11 17 17 H 1.48503 * 109.47104 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47092 * 119.99279 * 16 14 12 19 19 H 1.48492 * 109.47326 * 239.99496 * 16 14 12 20 20 C 1.40231 * 119.93055 * 359.59165 * 11 10 9 21 21 C 1.39367 * 119.30872 * 0.02562 * 20 11 10 22 22 H 1.09002 * 109.47174 * 299.99601 * 1 2 3 23 23 H 1.09008 * 109.46687 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47506 * 59.99907 * 1 2 3 25 25 H 1.09005 * 109.46963 * 239.99917 * 2 1 3 26 26 H 1.08996 * 109.47529 * 60.00154 * 3 2 1 27 27 H 1.09001 * 109.47481 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47287 * 300.00160 * 3 2 1 29 29 H 1.08998 * 109.47504 * 90.01672 * 7 6 5 30 30 H 1.09003 * 109.47466 * 210.02038 * 7 6 5 31 31 H 1.09007 * 109.47055 * 330.01851 * 7 6 5 32 32 H 1.08004 * 119.82065 * 0.02562 * 9 8 6 33 33 H 1.07996 * 119.70538 * 180.21366 * 10 9 8 34 34 H 0.97001 * 119.99848 * 180.02562 * 15 14 12 35 35 H 1.08004 * 120.34337 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7926 -0.3721 2.4647 6 7 2.4220 -1.2629 3.3395 7 6 2.3718 -1.1937 4.8019 8 6 3.0910 -2.2096 2.6139 9 6 3.8727 -3.3151 2.9650 10 6 4.4135 -4.1069 2.0027 11 6 4.2067 -3.8193 0.6355 12 6 4.7823 -4.6457 -0.3561 13 1 5.6739 -5.2136 -0.1350 14 6 4.1972 -4.7280 -1.6239 15 7 2.9659 -4.3225 -1.8039 16 14 5.1731 -5.4169 -3.0600 17 1 6.5305 -5.8018 -2.5968 18 1 4.4778 -6.6113 -3.6034 19 1 5.2870 -4.3848 -4.1216 20 6 3.4301 -2.7127 0.2630 21 6 2.8706 -1.9075 1.2533 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.5206 -1.7703 5.1640 30 1 3.2920 -1.6048 5.2170 31 1 2.2653 -0.1545 5.1131 32 1 4.0370 -3.5475 4.0069 33 1 5.0125 -4.9598 2.2856 34 1 2.5600 -4.3799 -2.6831 35 1 3.2673 -2.4868 -0.7806 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260447868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:03 Heat of formation + Delta-G solvation = 48.501487 kcal Electronic energy + Delta-G solvation = -17317.587574 eV Core-core repulsion = 14701.322366 eV Total energy + Delta-G solvation = -2616.265208 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.74232 -38.04619 -36.63502 -35.02173 -33.13835 -31.07054 -30.53767 -27.98585 -27.75472 -26.25048 -23.79586 -22.71710 -22.26340 -19.71550 -19.15685 -17.65338 -17.20112 -16.39214 -16.16186 -15.65384 -15.25511 -15.14358 -14.62089 -14.26556 -14.18523 -13.73739 -13.49899 -13.28265 -13.08303 -12.91395 -12.74316 -12.44866 -12.39040 -12.15309 -12.01841 -11.84912 -11.72802 -11.44371 -11.09628 -10.94116 -10.29915 -9.25580 -8.55671 -8.46815 -6.13765 0.44808 1.02222 1.43067 1.52855 1.57282 1.82377 1.83478 2.27633 2.77650 3.63593 3.70988 3.80921 4.11002 4.17949 4.30555 4.40767 4.50052 4.58735 4.66535 4.69232 4.82921 4.88954 4.96927 4.97655 5.08027 5.10674 5.28982 5.36096 5.38989 5.43955 5.58063 5.74253 5.98590 6.07648 6.25756 6.54205 6.66640 6.97773 7.02824 7.08478 8.46910 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.008090 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.216187 B = 3460.333510 C = 4490.998691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.014 4.014 3 C -0.129 4.129 4 C 0.074 3.926 5 N -0.273 5.273 6 N -0.427 5.427 7 C 0.114 3.886 8 C 0.022 3.978 9 C -0.125 4.125 10 C -0.151 4.151 11 C 0.045 3.955 12 C -0.498 4.498 13 H 0.077 0.923 14 C 0.033 3.967 15 N -0.834 5.834 16 Si 0.977 3.023 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.137 4.137 21 C -0.164 4.164 22 H 0.058 0.942 23 H 0.036 0.964 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.284 0.716 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 6.235 3.894 7.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.034 4.034 3 C -0.187 4.187 4 C -0.103 4.103 5 N -0.087 5.087 6 N -0.220 5.220 7 C -0.026 4.026 8 C -0.088 4.088 9 C -0.147 4.147 10 C -0.172 4.172 11 C 0.042 3.958 12 C -0.529 4.529 13 H 0.095 0.905 14 C -0.180 4.180 15 N -0.461 5.461 16 Si 0.798 3.202 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.192 1.192 20 C -0.160 4.160 21 C -0.171 4.171 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.512 7.061 4.721 8.858 hybrid contribution 0.728 -1.236 -0.976 1.735 sum -1.783 5.826 3.746 7.152 Atomic orbital electron populations 1.21718 0.92686 1.01294 1.03018 1.19642 0.96867 0.95973 0.90960 1.21727 1.00406 0.93487 1.03062 1.23704 0.97872 0.94899 0.93846 1.76014 1.17584 1.14886 1.00243 1.47854 1.45336 1.22862 1.05940 1.21788 1.03431 1.04215 0.73193 1.18765 1.02649 0.96175 0.91251 1.19617 1.01089 0.94522 0.99460 1.21050 1.03470 1.00047 0.92672 1.17766 0.93450 0.92109 0.92499 1.19664 1.11331 1.25222 0.96700 0.90535 1.26621 0.94961 0.94192 1.02194 1.69915 1.12672 1.38436 1.25097 0.85238 0.79302 0.78367 0.77254 1.18210 1.19444 1.19240 1.20660 1.03388 0.94990 0.96923 1.20115 1.04465 0.98719 0.93780 0.92255 0.94439 0.89473 0.90751 0.92262 0.93862 0.89500 0.91382 0.88929 0.89007 0.85068 0.86135 0.90583 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.18 71.98 0.66 -3.24 16 2 C -0.01 -0.49 3.36 -11.54 -0.04 -0.53 16 3 C -0.13 -3.71 9.17 71.98 0.66 -3.05 16 4 C 0.07 3.24 5.95 44.85 0.27 3.50 16 5 N -0.27 -11.44 12.39 -43.56 -0.54 -11.98 16 6 N -0.43 -17.28 4.04 -360.49 -1.46 -18.74 16 7 C 0.11 3.17 11.38 127.77 1.45 4.62 16 8 C 0.02 1.03 6.87 39.47 0.27 1.30 16 9 C -0.13 -5.44 9.89 22.11 0.22 -5.22 16 10 C -0.15 -7.21 9.69 22.45 0.22 -6.99 16 11 C 0.04 2.42 5.57 -21.30 -0.12 2.30 16 12 C -0.50 -26.86 9.04 23.43 0.21 -26.65 16 13 H 0.08 3.94 7.90 -2.91 -0.02 3.91 16 14 C 0.03 1.70 5.14 85.23 0.44 2.14 16 15 N -0.83 -44.37 10.96 21.81 0.24 -44.13 16 16 Si 0.98 38.75 29.59 68.60 2.03 40.78 16 17 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 20 C -0.14 -7.47 8.75 23.03 0.20 -7.27 16 21 C -0.16 -8.26 6.31 -20.25 -0.13 -8.39 16 22 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 31 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 34 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 35 H 0.11 6.02 6.19 -2.91 -0.02 6.00 16 Total: -1.00 -64.39 298.48 5.66 -58.74 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.07 Total: 22.80 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 4.32 Total: -47.48 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.76 Total: -74.84 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -64.39 5.66 -58.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.237 kcal (2) G-P(sol) polarization free energy of solvation -64.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds