Wall clock time and date at job start Mon Mar 30 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47340 * 2 1 4 4 C 1.50703 * 109.47063 * 239.99705 * 2 1 3 5 5 C 1.37840 * 126.51932 * 59.42896 * 4 2 1 6 6 C 1.45551 * 135.78646 * 0.03522 * 5 4 2 7 7 C 1.35182 * 119.44450 * 179.97438 * 6 5 4 8 8 C 1.45982 * 120.80246 * 359.97438 * 7 6 5 9 9 C 1.40962 * 119.42551 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00109 * 204.88534 * 9 8 7 11 11 C 1.39859 * 120.00036 * 24.88794 * 9 8 7 12 12 N 1.30882 * 120.00095 * 19.10365 * 11 9 8 13 13 Si 1.86798 * 120.00108 * 199.10935 * 11 9 8 14 14 H 1.48502 * 109.47178 * 89.99220 * 13 11 9 15 15 H 1.48498 * 109.47421 * 209.99806 * 13 11 9 16 16 H 1.48502 * 109.47036 * 329.99613 * 13 11 9 17 17 C 1.39806 * 121.15346 * 0.02562 * 8 7 6 18 18 C 1.40081 * 119.87072 * 359.97438 * 17 8 7 19 19 N 1.32409 * 135.16962 * 180.02562 * 18 17 8 20 20 N 1.28482 * 110.69271 * 179.68172 * 19 18 17 21 21 C 1.46495 * 123.98319 * 180.29682 * 20 19 18 22 22 H 1.08995 * 109.47134 * 173.78077 * 1 2 3 23 23 H 1.09002 * 109.46848 * 53.78032 * 1 2 3 24 24 H 1.08990 * 109.46882 * 293.78274 * 1 2 3 25 25 H 1.08997 * 109.46675 * 120.00302 * 2 1 3 26 26 H 1.09000 * 109.47655 * 300.00309 * 3 2 1 27 27 H 1.09005 * 109.47276 * 60.00203 * 3 2 1 28 28 H 1.08997 * 109.47482 * 179.97438 * 3 2 1 29 29 H 1.08002 * 120.28312 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.59986 * 179.97438 * 7 6 5 31 31 H 0.97000 * 120.00333 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.06848 * 179.97438 * 17 8 7 33 33 H 1.08998 * 109.47558 * 266.28668 * 21 20 19 34 34 H 1.08994 * 109.47648 * 26.29499 * 21 20 19 35 35 H 1.09007 * 109.47604 * 146.29100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 6 1.7746 -0.3651 -2.5398 6 6 1.0185 0.6803 -3.2134 7 6 0.9866 0.7118 -4.5645 8 6 1.7007 -0.2882 -5.3526 9 6 1.6480 -0.2276 -6.7600 10 1 1.8027 -1.1221 -7.3452 11 6 1.3956 0.9908 -7.3985 12 7 1.5762 2.1164 -6.7555 13 14 0.8006 1.0118 -9.1690 14 1 -0.6838 0.9757 -9.1929 15 1 1.2764 2.2500 -9.8366 16 1 1.3360 -0.1737 -9.8853 17 6 2.4358 -1.3050 -4.7360 18 6 2.4949 -1.3739 -3.3382 19 7 3.0783 -2.1764 -2.4613 20 7 2.8230 -1.7986 -1.2601 21 6 3.3287 -2.4761 -0.0638 22 1 -0.3633 -1.0216 -0.1113 23 1 -0.3633 0.6073 -0.8291 24 1 -0.3633 0.4144 0.9403 25 1 1.8933 -0.5139 0.8900 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 0.4874 1.4247 -2.6388 30 1 0.4260 1.4861 -5.0669 31 1 1.4008 2.9615 -7.1982 32 1 2.9572 -2.0361 -5.3362 33 1 2.5911 -3.1997 0.2833 34 1 4.2585 -2.9918 -0.3038 35 1 3.5129 -1.7410 0.7197 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260460491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:13 Heat of formation + Delta-G solvation = 56.169345 kcal Electronic energy + Delta-G solvation = -17309.572529 eV Core-core repulsion = 14693.639824 eV Total energy + Delta-G solvation = -2615.932704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.84780 -37.98239 -36.56711 -35.29115 -32.91826 -31.74450 -29.45955 -28.86920 -27.95749 -26.28180 -23.76679 -22.67791 -22.13226 -20.09292 -19.06419 -17.59983 -17.43331 -16.86805 -16.76557 -15.59386 -15.24594 -14.77935 -14.65516 -14.08416 -14.00967 -13.73203 -13.64687 -13.42845 -13.03036 -12.94585 -12.81776 -12.55466 -12.35294 -12.08425 -12.01203 -11.78381 -11.73447 -11.48844 -10.98980 -10.59582 -10.39715 -9.07249 -8.78421 -8.27304 -6.31349 0.36592 1.19887 1.40688 1.54364 1.62429 1.98090 2.05877 2.21913 2.68244 3.65378 3.67247 3.76703 3.98302 4.26655 4.28276 4.40033 4.48283 4.52465 4.66301 4.76666 4.86955 4.90724 5.00750 5.02341 5.07070 5.10067 5.20133 5.23259 5.43018 5.50521 5.69470 5.85306 6.00258 6.16544 6.27722 6.47275 6.52952 6.90859 6.99738 7.63904 8.25789 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034474 B = 0.006334 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.012910 B = 4419.236043 C = 4968.449015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.013 4.013 3 C -0.139 4.139 4 C 0.042 3.958 5 C -0.235 4.235 6 C -0.077 4.077 7 C -0.128 4.128 8 C 0.115 3.885 9 C -0.485 4.485 10 H 0.073 0.927 11 C 0.041 3.959 12 N -0.812 5.812 13 Si 0.988 3.012 14 H -0.256 1.256 15 H -0.262 1.262 16 H -0.263 1.263 17 C -0.328 4.328 18 C 0.095 3.905 19 N -0.406 5.406 20 N -0.284 5.284 21 C 0.079 3.921 22 H 0.044 0.956 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.044 0.956 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.295 0.705 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 1.042 13.255 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.033 4.033 3 C -0.197 4.197 4 C -0.091 4.091 5 C -0.245 4.245 6 C -0.097 4.097 7 C -0.147 4.147 8 C 0.110 3.890 9 C -0.515 4.515 10 H 0.091 0.909 11 C -0.176 4.176 12 N -0.437 5.437 13 Si 0.808 3.192 14 H -0.180 1.180 15 H -0.186 1.186 16 H -0.187 1.187 17 C -0.353 4.353 18 C -0.050 4.050 19 N -0.240 5.240 20 N -0.063 5.063 21 C -0.060 4.060 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.065 0.935 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.954 0.180 13.498 13.640 hybrid contribution -0.267 0.347 -1.376 1.444 sum -2.221 0.527 12.122 12.335 Atomic orbital electron populations 1.21804 0.92927 1.01709 1.03088 1.19788 0.96732 0.95634 0.91169 1.21825 1.00651 0.94361 1.02890 1.21645 0.99020 0.92390 0.96091 1.20334 1.09903 1.02114 0.92109 1.21024 0.98949 0.96340 0.93352 1.22110 1.00416 0.99021 0.93185 1.18535 0.87308 0.89515 0.93683 1.19797 1.43766 0.95874 0.92042 0.90895 1.26826 0.91588 0.93783 1.05383 1.69878 1.33303 0.99583 1.40913 0.85121 0.79618 0.79062 0.75413 1.18022 1.18641 1.18710 1.19371 1.16895 1.09690 0.89323 1.20578 0.96628 0.93291 0.94464 1.73476 1.32054 1.28307 0.90175 1.45311 1.34644 1.20583 1.05717 1.22375 1.01660 0.99200 0.82814 0.93642 0.93345 0.88897 0.87600 0.93702 0.88874 0.93486 0.85315 0.86256 0.89393 0.91270 0.88651 0.88940 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.05 71.98 0.65 -2.49 16 2 C -0.01 -0.33 3.16 -11.54 -0.04 -0.37 16 3 C -0.14 -3.28 9.09 71.98 0.65 -2.62 16 4 C 0.04 1.59 5.68 42.05 0.24 1.83 16 5 C -0.24 -11.26 6.17 -19.06 -0.12 -11.38 16 6 C -0.08 -3.62 9.38 23.45 0.22 -3.40 16 7 C -0.13 -6.83 8.70 23.57 0.21 -6.62 16 8 C 0.12 6.77 5.68 -20.22 -0.11 6.65 16 9 C -0.49 -27.50 8.97 23.33 0.21 -27.29 16 10 H 0.07 4.09 7.91 -2.91 -0.02 4.07 16 11 C 0.04 2.09 5.09 85.23 0.43 2.52 16 12 N -0.81 -41.59 10.98 21.81 0.24 -41.35 16 13 Si 0.99 37.96 29.60 68.60 2.03 39.99 16 14 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 15 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 16 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 17 C -0.33 -19.61 9.80 23.10 0.23 -19.38 16 18 C 0.10 5.28 7.50 41.93 0.31 5.60 16 19 N -0.41 -20.21 11.93 -48.98 -0.58 -20.80 16 20 N -0.28 -10.90 3.66 -354.28 -1.30 -12.20 16 21 C 0.08 1.82 10.78 127.77 1.38 3.20 16 22 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.05 1.27 6.94 -2.39 -0.02 1.26 16 24 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.11 1.88 6.69 -2.39 -0.02 1.87 16 26 H 0.04 1.26 6.85 -2.39 -0.02 1.24 16 27 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.13 5.07 6.61 -2.91 -0.02 5.05 16 30 H 0.12 6.29 6.23 -2.91 -0.02 6.27 16 31 H 0.30 13.36 8.30 -92.71 -0.77 12.59 16 32 H 0.07 4.22 8.06 -2.91 -0.02 4.19 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.12 1.85 7.07 -2.38 -0.02 1.83 16 Total: -1.00 -73.24 290.06 5.74 -67.50 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.09 Total: 20.60 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 4.26 Total: -53.75 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.64 Total: -74.34 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -73.24 5.74 -67.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260460491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.673 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds