Wall clock time and date at job start Mon Mar 30 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 C 1.50697 * 109.47365 * 239.99637 * 2 1 3 5 5 N 1.30390 * 125.58721 * 59.69300 * 4 2 1 6 6 N 1.40014 * 109.79188 * 179.87983 * 5 4 2 7 7 C 1.46497 * 126.01316 * 180.13066 * 6 5 4 8 8 C 1.37460 * 107.97667 * 0.38724 * 6 5 4 9 9 C 1.38492 * 133.57691 * 179.69637 * 8 6 5 10 10 C 1.40441 * 119.51681 * 180.02562 * 9 8 6 11 11 C 1.41085 * 119.98371 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99669 * 24.93321 * 11 10 9 13 13 C 1.39954 * 120.00362 * 204.93944 * 11 10 9 14 14 N 1.30830 * 119.99948 * 18.02224 * 13 11 10 15 15 Si 1.86804 * 120.00386 * 198.02470 * 13 11 10 16 16 H 1.48503 * 109.46840 * 59.99468 * 15 13 11 17 17 H 1.48492 * 109.47633 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46844 * 300.00373 * 15 13 11 19 19 C 1.41317 * 120.03885 * 0.02959 * 10 9 8 20 20 C 1.35585 * 120.45021 * 359.97438 * 19 10 9 21 21 C 1.40742 * 120.19239 * 0.02562 * 20 19 10 22 22 H 1.09002 * 109.47301 * 60.00092 * 1 2 3 23 23 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46950 * 300.00119 * 1 2 3 25 25 H 1.09002 * 109.47301 * 119.99908 * 2 1 3 26 26 H 1.09001 * 109.47062 * 59.99263 * 3 2 1 27 27 H 1.08995 * 109.47189 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46852 * 300.00183 * 3 2 1 29 29 H 1.08998 * 109.47536 * 270.30531 * 7 6 5 30 30 H 1.09002 * 109.47132 * 30.30185 * 7 6 5 31 31 H 1.09000 * 109.47651 * 150.30150 * 7 6 5 32 32 H 1.07997 * 120.23913 * 0.02770 * 9 8 6 33 33 H 0.97002 * 120.00221 * 179.97438 * 14 13 11 34 34 H 1.08001 * 119.77953 * 179.97438 * 19 10 9 35 35 H 1.08000 * 119.90603 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7809 -0.3646 -2.4622 6 7 2.4136 -1.2511 -3.3421 7 6 2.3694 -1.1908 -4.8052 8 6 3.0788 -2.1912 -2.5917 9 6 3.8555 -3.2924 -2.9112 10 6 4.4073 -4.0721 -1.8816 11 6 5.2006 -5.1957 -2.1958 12 1 5.7167 -5.2443 -3.1433 13 6 5.3186 -6.2473 -1.2799 14 7 4.4480 -6.3720 -0.3114 15 14 6.7192 -7.4729 -1.4402 16 1 8.0167 -6.7582 -1.3352 17 1 6.6210 -8.4817 -0.3550 18 1 6.6339 -8.1525 -2.7578 19 6 4.1683 -3.7319 -0.5310 20 6 3.4078 -2.6539 -0.2181 21 6 2.8479 -1.8626 -1.2384 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.5191 -1.7688 -5.1671 30 1 2.2651 -0.1534 -5.1231 31 1 3.2909 -1.6052 -5.2140 32 1 4.0356 -3.5496 -3.9445 33 1 4.5295 -7.1010 0.3233 34 1 4.5944 -4.3347 0.2575 35 1 3.2305 -2.4022 0.8171 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260481369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:20 Heat of formation + Delta-G solvation = 60.403080 kcal Electronic energy + Delta-G solvation = -17157.048709 eV Core-core repulsion = 14541.299593 eV Total energy + Delta-G solvation = -2615.749116 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.10192 -36.28863 -35.19289 -33.33324 -31.57707 -29.44503 -28.66163 -26.81531 -25.76914 -25.09245 -21.98188 -20.92388 -20.58593 -18.31031 -17.12120 -15.91987 -15.34944 -15.04759 -14.53469 -14.15473 -13.76497 -13.53515 -13.01960 -12.90755 -12.61540 -12.09164 -11.95666 -11.83444 -11.74575 -11.36963 -11.25679 -10.91622 -10.83190 -10.67886 -10.57453 -10.24961 -10.06413 -9.59698 -9.37026 -9.15102 -8.71584 -7.31291 -6.98756 -6.60513 -4.49706 2.29342 2.92916 2.99314 3.02367 3.19963 3.44643 3.65560 3.81584 4.53272 5.11274 5.26240 5.44895 5.50622 5.63368 5.78309 5.86211 5.90952 5.91406 5.98746 6.11513 6.15020 6.25531 6.41700 6.57619 6.57944 6.73714 6.83636 6.91368 6.96387 7.15601 7.46199 7.73907 7.80883 7.90337 8.13087 8.26652 8.46168 8.71687 8.78264 8.92479 9.99395 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.006287 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.276039 B = 4452.292157 C = 5086.384070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.012 4.012 3 C -0.138 4.138 4 C 0.111 3.889 5 N -0.314 5.314 6 N -0.434 5.434 7 C 0.128 3.872 8 C 0.172 3.828 9 C -0.291 4.291 10 C 0.151 3.849 11 C -0.447 4.447 12 H 0.082 0.918 13 C 0.076 3.924 14 N -0.780 5.780 15 Si 0.913 3.087 16 H -0.261 1.261 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.156 4.156 20 C -0.054 4.054 21 C -0.267 4.267 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.285 0.715 34 H 0.122 0.878 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 5.778 0.422 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.196 4.196 4 C -0.062 4.062 5 N -0.129 5.129 6 N -0.224 5.224 7 C -0.014 4.014 8 C 0.060 3.940 9 C -0.316 4.316 10 C 0.146 3.854 11 C -0.476 4.476 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.404 5.404 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.176 4.176 20 C -0.075 4.075 21 C -0.275 4.275 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.706 6.489 -0.329 7.038 hybrid contribution 0.970 -1.346 0.224 1.674 sum -1.735 5.143 -0.105 5.429 Atomic orbital electron populations 1.21779 0.94578 1.01866 1.01414 1.19503 0.95399 0.95066 0.93283 1.21776 1.01133 0.95256 1.01427 1.21778 0.96869 0.94776 0.92780 1.76331 1.20983 1.16087 0.99477 1.47866 1.46128 1.24133 1.04265 1.21339 1.01807 1.02089 0.76214 1.18701 0.94101 0.90991 0.90193 1.19669 1.12508 1.01527 0.97900 1.17382 0.87135 0.90228 0.90647 1.19604 1.24675 1.00743 1.02623 0.89981 1.26020 0.95865 0.98718 0.93789 1.69829 1.30060 1.28357 1.12152 0.86281 0.81591 0.79349 0.79102 1.18577 1.20135 1.18807 1.20994 1.02456 0.96960 0.97192 1.19937 0.97161 0.94684 0.95730 1.18297 1.13400 1.02518 0.93325 0.92374 0.92703 0.92774 0.89945 0.92772 0.92744 0.92388 0.92982 0.91100 0.90786 0.88983 0.90362 0.86007 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.18 37.16 0.34 -1.69 16 2 C -0.01 -0.20 3.34 -91.77 -0.31 -0.51 16 3 C -0.14 -1.99 9.18 37.16 0.34 -1.65 16 4 C 0.11 2.36 5.73 -82.10 -0.47 1.89 16 5 N -0.31 -6.88 12.45 33.86 0.42 -6.46 16 6 N -0.43 -9.63 4.08 -65.48 -0.27 -9.89 16 7 C 0.13 2.16 11.45 59.85 0.69 2.85 16 8 C 0.17 4.26 6.87 -84.14 -0.58 3.68 16 9 C -0.29 -7.37 9.76 -38.66 -0.38 -7.74 16 10 C 0.15 3.98 5.57 -106.82 -0.59 3.39 16 11 C -0.45 -11.41 9.02 -37.86 -0.34 -11.75 16 12 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 13 C 0.08 1.82 5.12 -17.34 -0.09 1.73 16 14 N -0.78 -19.15 10.97 55.55 0.61 -18.54 16 15 Si 0.91 17.66 29.60 -169.99 -5.03 12.63 16 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 17 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 C -0.16 -3.96 8.59 -39.36 -0.34 -4.30 16 20 C -0.05 -1.28 9.88 -39.58 -0.39 -1.67 16 21 C -0.27 -6.42 6.11 -106.73 -0.65 -7.07 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 1.31 7.67 -51.93 -0.40 0.91 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 34 H 0.12 3.10 6.15 -52.49 -0.32 2.77 16 35 H 0.09 1.94 7.76 -52.49 -0.41 1.53 16 LS Contribution 297.32 15.07 4.48 4.48 Total: -1.00 -28.80 297.32 -7.46 -36.27 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.91 Total: 4.37 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.77 Total: -22.85 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.76 Total: -34.89 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.80 -7.46 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.669 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds