Wall clock time and date at job start Mon Mar 30 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 C 1.50697 * 109.47365 * 239.99637 * 2 1 3 5 5 N 1.30390 * 125.58721 * 59.69300 * 4 2 1 6 6 N 1.40014 * 109.79188 * 179.87983 * 5 4 2 7 7 C 1.46497 * 126.01316 * 180.13066 * 6 5 4 8 8 C 1.37460 * 107.97667 * 0.38724 * 6 5 4 9 9 C 1.38492 * 133.57691 * 179.69637 * 8 6 5 10 10 C 1.40441 * 119.51681 * 180.02562 * 9 8 6 11 11 C 1.41085 * 119.98371 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99669 * 24.93321 * 11 10 9 13 13 C 1.39954 * 120.00362 * 204.93944 * 11 10 9 14 14 N 1.30830 * 119.99948 * 18.02224 * 13 11 10 15 15 Si 1.86804 * 120.00386 * 198.02470 * 13 11 10 16 16 H 1.48503 * 109.46840 * 59.99468 * 15 13 11 17 17 H 1.48492 * 109.47633 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46844 * 300.00373 * 15 13 11 19 19 C 1.41317 * 120.03885 * 0.02959 * 10 9 8 20 20 C 1.35585 * 120.45021 * 359.97438 * 19 10 9 21 21 C 1.40742 * 120.19239 * 0.02562 * 20 19 10 22 22 H 1.09002 * 109.47301 * 60.00092 * 1 2 3 23 23 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46950 * 300.00119 * 1 2 3 25 25 H 1.09002 * 109.47301 * 119.99908 * 2 1 3 26 26 H 1.09001 * 109.47062 * 59.99263 * 3 2 1 27 27 H 1.08995 * 109.47189 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46852 * 300.00183 * 3 2 1 29 29 H 1.08998 * 109.47536 * 270.30531 * 7 6 5 30 30 H 1.09002 * 109.47132 * 30.30185 * 7 6 5 31 31 H 1.09000 * 109.47651 * 150.30150 * 7 6 5 32 32 H 1.07997 * 120.23913 * 0.02770 * 9 8 6 33 33 H 0.97002 * 120.00221 * 179.97438 * 14 13 11 34 34 H 1.08001 * 119.77953 * 179.97438 * 19 10 9 35 35 H 1.08000 * 119.90603 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7809 -0.3646 -2.4622 6 7 2.4136 -1.2511 -3.3421 7 6 2.3694 -1.1908 -4.8052 8 6 3.0788 -2.1912 -2.5917 9 6 3.8555 -3.2924 -2.9112 10 6 4.4073 -4.0721 -1.8816 11 6 5.2006 -5.1957 -2.1958 12 1 5.7167 -5.2443 -3.1433 13 6 5.3186 -6.2473 -1.2799 14 7 4.4480 -6.3720 -0.3114 15 14 6.7192 -7.4729 -1.4402 16 1 8.0167 -6.7582 -1.3352 17 1 6.6210 -8.4817 -0.3550 18 1 6.6339 -8.1525 -2.7578 19 6 4.1683 -3.7319 -0.5310 20 6 3.4078 -2.6539 -0.2181 21 6 2.8479 -1.8626 -1.2384 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.5191 -1.7688 -5.1671 30 1 2.2651 -0.1534 -5.1231 31 1 3.2909 -1.6052 -5.2140 32 1 4.0356 -3.5496 -3.9445 33 1 4.5295 -7.1010 0.3233 34 1 4.5944 -4.3347 0.2575 35 1 3.2305 -2.4022 0.8171 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260481369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:18 Heat of formation + Delta-G solvation = 45.351097 kcal Electronic energy + Delta-G solvation = -17157.701412 eV Core-core repulsion = 14541.299593 eV Total energy + Delta-G solvation = -2616.401819 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84106 -38.09898 -36.59317 -35.15718 -33.12652 -31.26238 -30.47944 -27.95032 -27.45063 -26.81048 -23.52165 -22.66371 -22.39387 -19.99069 -18.83241 -17.64140 -17.12512 -16.78674 -16.14625 -15.59182 -15.22340 -15.09311 -14.62502 -14.31327 -14.25971 -13.71784 -13.41945 -13.30942 -13.05154 -12.94699 -12.81523 -12.53349 -12.27757 -12.12394 -11.96534 -11.87567 -11.75837 -11.33712 -11.12488 -10.95023 -10.46073 -9.20103 -8.78913 -8.40943 -6.42312 0.48984 1.21185 1.40451 1.47270 1.53522 1.85811 1.93021 2.19583 2.71055 3.65115 3.68454 3.94008 4.17179 4.19995 4.34527 4.44594 4.56736 4.61994 4.69368 4.78403 4.86375 4.95585 4.98091 5.01326 5.06952 5.11062 5.16516 5.32739 5.40673 5.42459 5.68166 5.85394 6.00252 6.02033 6.25838 6.49938 6.57363 6.84077 6.91885 7.12913 8.22269 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.006287 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.276039 B = 4452.292157 C = 5086.384070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 C -0.131 4.131 4 C 0.113 3.887 5 N -0.318 5.318 6 N -0.441 5.441 7 C 0.118 3.882 8 C 0.153 3.847 9 C -0.310 4.310 10 C 0.124 3.876 11 C -0.479 4.479 12 H 0.082 0.918 13 C 0.040 3.960 14 N -0.807 5.807 15 Si 0.988 3.012 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.259 1.259 19 C -0.179 4.179 20 C -0.049 4.049 21 C -0.292 4.292 22 H 0.051 0.949 23 H 0.040 0.960 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.295 0.705 34 H 0.115 0.885 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 6.380 1.113 6.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.037 4.037 3 C -0.189 4.189 4 C -0.061 4.061 5 N -0.133 5.133 6 N -0.231 5.231 7 C -0.022 4.022 8 C 0.039 3.961 9 C -0.335 4.335 10 C 0.119 3.881 11 C -0.508 4.508 12 H 0.100 0.900 13 C -0.178 4.178 14 N -0.432 5.432 15 Si 0.808 3.192 16 H -0.183 1.183 17 H -0.188 1.188 18 H -0.183 1.183 19 C -0.199 4.199 20 C -0.069 4.069 21 C -0.300 4.300 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.949 7.111 0.338 7.706 hybrid contribution 0.948 -1.446 -0.013 1.729 sum -2.001 5.665 0.325 6.017 Atomic orbital electron populations 1.21737 0.92922 1.01461 1.02857 1.19755 0.96737 0.95993 0.91219 1.21729 1.00474 0.93828 1.02835 1.22462 0.95644 0.93888 0.94092 1.76305 1.21003 1.16146 0.99853 1.48309 1.45480 1.23387 1.05917 1.21680 1.02878 1.04029 0.73653 1.18921 0.94341 0.91363 0.91445 1.19745 1.13508 1.02390 0.97879 1.17746 0.87845 0.91045 0.91431 1.19862 1.25704 1.01642 1.03591 0.90036 1.26872 0.97972 1.00092 0.92901 1.69859 1.31310 1.29307 1.12692 0.85156 0.77800 0.76802 0.79442 1.18268 1.18774 1.18343 1.20988 1.04077 0.98061 0.96755 1.20206 0.95830 0.93718 0.97179 1.18735 1.14223 1.03731 0.93298 0.93015 0.94031 0.89244 0.89164 0.89290 0.93734 0.93041 0.91658 0.88716 0.89972 0.88880 0.89368 0.86696 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.18 71.98 0.66 -2.86 16 2 C -0.02 -0.51 3.34 -11.54 -0.04 -0.55 16 3 C -0.13 -3.41 9.18 71.98 0.66 -2.75 16 4 C 0.11 4.70 5.73 43.49 0.25 4.94 16 5 N -0.32 -13.68 12.45 -46.79 -0.58 -14.26 16 6 N -0.44 -19.46 4.08 -361.07 -1.47 -20.93 16 7 C 0.12 3.89 11.45 127.77 1.46 5.35 16 8 C 0.15 7.67 6.87 39.04 0.27 7.94 16 9 C -0.31 -16.26 9.76 22.87 0.22 -16.04 16 10 C 0.12 6.78 5.57 -21.29 -0.12 6.67 16 11 C -0.48 -25.19 9.02 23.38 0.21 -24.98 16 12 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 13 C 0.04 1.90 5.12 85.26 0.44 2.34 16 14 N -0.81 -40.09 10.97 21.83 0.24 -39.85 16 15 Si 0.99 35.95 29.60 68.60 2.03 37.98 16 16 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 17 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 18 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 19 C -0.18 -9.33 8.59 22.41 0.19 -9.14 16 20 C -0.05 -2.32 9.88 22.27 0.22 -2.10 16 21 C -0.29 -14.07 6.11 -21.23 -0.13 -14.20 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.09 2.65 7.67 -2.39 -0.02 2.63 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 33 H 0.30 13.06 8.30 -92.71 -0.77 12.30 16 34 H 0.12 6.03 6.15 -2.91 -0.02 6.01 16 35 H 0.12 4.92 7.76 -2.91 -0.02 4.90 16 Total: -1.00 -63.03 297.32 5.58 -57.45 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.07 Total: 24.99 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 4.30 Total: -45.38 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.82 Total: -75.04 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -63.03 5.58 -57.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260481369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.800 kcal (2) G-P(sol) polarization free energy of solvation -63.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds