Wall clock time and date at job start Mon Mar 30 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47428 * 2 1 4 4 C 1.38241 * 126.04430 * 270.00200 * 3 2 1 5 5 C 1.41128 * 134.82441 * 0.05604 * 4 3 2 6 6 C 1.35655 * 119.53296 * 179.97438 * 5 4 3 7 7 C 1.39678 * 121.73171 * 0.02562 * 6 5 4 8 8 C 1.35636 * 121.81568 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.20004 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47294 * 264.99842 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.41145 * 119.59350 * 0.27612 * 8 7 6 19 19 N 1.32066 * 134.67282 * 180.48106 * 18 8 7 20 20 N 1.33988 * 126.04610 * 90.04144 * 3 2 1 21 21 C 1.46505 * 125.02185 * 359.93025 * 20 3 2 22 22 H 1.08995 * 109.47155 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46764 * 300.00360 * 1 2 3 24 24 H 1.08998 * 109.46781 * 59.99255 * 1 2 3 25 25 H 1.08998 * 109.47457 * 239.99956 * 2 1 3 26 26 H 1.09003 * 109.47203 * 119.99933 * 2 1 3 27 27 H 1.07990 * 120.23088 * 359.95733 * 5 4 3 28 28 H 1.07999 * 119.13270 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.09003 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.46665 * 145.00223 * 9 8 7 31 31 H 1.09000 * 109.47722 * 25.00555 * 9 8 7 32 32 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47206 * 90.00066 * 21 20 3 34 34 H 1.09004 * 109.47118 * 210.00282 * 21 20 3 35 35 H 1.09002 * 109.47013 * 330.00228 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3035 2.1877 -1.1178 5 6 2.2279 1.9769 -2.5112 6 6 2.5808 2.9756 -3.3587 7 6 3.0207 4.2157 -2.8900 8 6 3.1174 4.4859 -1.5644 9 6 3.5960 5.8369 -1.0990 10 6 5.0772 5.7789 -0.8270 11 1 5.6178 4.8560 -0.9766 12 6 5.7419 6.9038 -0.3872 13 7 5.0833 8.0275 -0.2045 14 14 7.5780 6.8321 -0.0507 15 1 8.3219 7.1795 -1.2881 16 1 7.9228 7.7991 1.0223 17 1 7.9488 5.4606 0.3811 18 6 2.7720 3.4920 -0.6235 19 7 2.7447 3.4315 0.6955 20 7 2.2960 2.1639 1.0834 21 6 2.1371 1.7159 2.4691 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8917 1.0272 -2.8999 28 1 2.5209 2.8071 -4.4237 29 1 3.2914 4.9805 -3.6029 30 1 3.0695 6.1140 -0.1856 31 1 3.3973 6.5790 -1.8722 32 1 5.5511 8.8190 0.1046 33 1 3.0662 1.2613 2.8128 34 1 1.8948 2.5700 3.1016 35 1 1.3320 0.9831 2.5241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260503506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:59 Heat of formation + Delta-G solvation = 78.198544 kcal Electronic energy + Delta-G solvation = -17108.521833 eV Core-core repulsion = 14493.544387 eV Total energy + Delta-G solvation = -2614.977447 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.87209 -37.03066 -34.16990 -33.21998 -32.01626 -31.21285 -28.40098 -26.97434 -26.45504 -23.69774 -23.07888 -21.53242 -20.94771 -18.26797 -16.57359 -16.25797 -16.16096 -15.45450 -15.04124 -14.45580 -14.05507 -13.79661 -13.40556 -12.97335 -12.82408 -12.52902 -12.41320 -12.01365 -11.73611 -11.43105 -11.24638 -11.14504 -10.89788 -10.74930 -10.54392 -10.33082 -9.99947 -9.61660 -9.15708 -9.02593 -8.29313 -7.94238 -6.77391 -5.90185 -3.92938 1.25368 2.49637 2.75852 3.02847 3.37818 3.43026 3.48668 4.48589 4.53053 4.62000 4.66611 4.82093 5.10311 5.17617 5.23022 5.35906 5.43182 5.43771 5.56929 5.60987 5.68101 5.77652 5.99850 6.06497 6.12453 6.33499 6.44321 6.90148 7.11557 7.16129 7.30017 7.37507 7.60236 7.74709 7.96405 8.04968 8.29362 8.47599 9.10483 9.68816 11.19091 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.006653 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.773385 B = 4207.473769 C = 4817.344665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C 0.075 3.925 4 C -0.193 4.193 5 C -0.090 4.090 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.006 4.006 9 C 0.053 3.947 10 C -0.499 4.499 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.113 3.887 19 N -0.279 5.279 20 N -0.333 5.333 21 C 0.093 3.907 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.902 -16.584 0.637 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.060 4.060 4 C -0.203 4.203 5 C -0.110 4.110 6 C -0.148 4.148 7 C -0.149 4.149 8 C -0.009 4.009 9 C 0.016 3.984 10 C -0.537 4.537 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.041 4.041 19 N -0.104 5.104 20 N -0.109 5.109 21 C -0.049 4.049 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.656 -15.772 2.010 18.103 hybrid contribution 0.989 -0.390 -0.367 1.124 sum -7.668 -16.162 1.643 17.964 Atomic orbital electron populations 1.21751 0.94160 1.01841 1.02700 1.20140 0.96299 0.89328 1.03610 1.20910 1.03162 0.94806 0.87167 1.19315 1.12232 0.94987 0.93721 1.19884 1.02563 0.98503 0.90095 1.20467 1.01770 0.93905 0.98650 1.20438 1.02471 0.97041 0.94959 1.19630 0.94351 0.96269 0.90615 1.18290 0.96086 0.86852 0.97153 1.20998 0.92381 0.96248 1.44121 0.92813 1.24966 0.98208 0.95458 0.95658 1.69967 1.35756 1.00875 1.46991 0.86565 0.85625 0.77752 0.77918 1.20615 1.21238 1.20026 1.20899 0.98249 0.94249 0.90674 1.77944 1.24135 0.95502 1.12868 1.48486 1.46250 1.10176 1.05982 1.21916 1.02720 1.01430 0.78797 0.91920 0.92840 0.91809 0.89308 0.90877 0.87267 0.87093 0.86137 0.95051 0.95239 0.93034 0.90414 0.88794 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.05 -0.56 5.89 -27.88 -0.16 -0.72 16 3 C 0.07 1.17 6.23 -81.65 -0.51 0.66 16 4 C -0.19 -3.66 6.26 -105.19 -0.66 -4.32 16 5 C -0.09 -1.51 10.09 -39.41 -0.40 -1.91 16 6 C -0.13 -2.23 9.90 -39.97 -0.40 -2.62 16 7 C -0.13 -2.63 9.52 -39.97 -0.38 -3.01 16 8 C -0.01 -0.14 5.08 -104.45 -0.53 -0.67 16 9 C 0.05 1.48 5.12 -29.03 -0.15 1.33 16 10 C -0.50 -14.95 9.09 -34.44 -0.31 -15.27 16 11 H 0.05 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 14 Si 0.89 22.70 29.54 -169.99 -5.02 17.68 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.11 2.62 7.21 -83.05 -0.60 2.02 16 19 N -0.28 -6.37 12.54 33.26 0.42 -5.95 16 20 N -0.33 -5.70 3.95 -63.34 -0.25 -5.95 16 21 C 0.09 1.04 10.97 59.85 0.66 1.70 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.60 7.60 -51.93 -0.39 0.21 16 27 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 2.37 8.03 -52.49 -0.42 1.95 16 30 H 0.03 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.66 7.51 -51.93 -0.39 0.27 16 LS Contribution 301.67 15.07 4.55 4.55 Total: -1.00 -35.34 301.67 -7.71 -43.05 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -4.97 Total: -4.28 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -3.17 Total: -22.10 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.90 Total: -38.89 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.34 -7.71 -43.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260503506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.249 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds