Wall clock time and date at job start Mon Mar 30 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47428 * 2 1 4 4 C 1.38241 * 126.04430 * 270.00200 * 3 2 1 5 5 C 1.41128 * 134.82441 * 0.05604 * 4 3 2 6 6 C 1.35655 * 119.53296 * 179.97438 * 5 4 3 7 7 C 1.39678 * 121.73171 * 0.02562 * 6 5 4 8 8 C 1.35636 * 121.81568 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.20004 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47294 * 264.99842 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.41145 * 119.59350 * 0.27612 * 8 7 6 19 19 N 1.32066 * 134.67282 * 180.48106 * 18 8 7 20 20 N 1.33988 * 126.04610 * 90.04144 * 3 2 1 21 21 C 1.46505 * 125.02185 * 359.93025 * 20 3 2 22 22 H 1.08995 * 109.47155 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46764 * 300.00360 * 1 2 3 24 24 H 1.08998 * 109.46781 * 59.99255 * 1 2 3 25 25 H 1.08998 * 109.47457 * 239.99956 * 2 1 3 26 26 H 1.09003 * 109.47203 * 119.99933 * 2 1 3 27 27 H 1.07990 * 120.23088 * 359.95733 * 5 4 3 28 28 H 1.07999 * 119.13270 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.09003 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.46665 * 145.00223 * 9 8 7 31 31 H 1.09000 * 109.47722 * 25.00555 * 9 8 7 32 32 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47206 * 90.00066 * 21 20 3 34 34 H 1.09004 * 109.47118 * 210.00282 * 21 20 3 35 35 H 1.09002 * 109.47013 * 330.00228 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3035 2.1877 -1.1178 5 6 2.2279 1.9769 -2.5112 6 6 2.5808 2.9756 -3.3587 7 6 3.0207 4.2157 -2.8900 8 6 3.1174 4.4859 -1.5644 9 6 3.5960 5.8369 -1.0990 10 6 5.0772 5.7789 -0.8270 11 1 5.6178 4.8560 -0.9766 12 6 5.7419 6.9038 -0.3872 13 7 5.0833 8.0275 -0.2045 14 14 7.5780 6.8321 -0.0507 15 1 8.3219 7.1795 -1.2881 16 1 7.9228 7.7991 1.0223 17 1 7.9488 5.4606 0.3811 18 6 2.7720 3.4920 -0.6235 19 7 2.7447 3.4315 0.6955 20 7 2.2960 2.1639 1.0834 21 6 2.1371 1.7159 2.4691 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8917 1.0272 -2.8999 28 1 2.5209 2.8071 -4.4237 29 1 3.2914 4.9805 -3.6029 30 1 3.0695 6.1140 -0.1856 31 1 3.3973 6.5790 -1.8722 32 1 5.5511 8.8190 0.1046 33 1 3.0662 1.2613 2.8128 34 1 1.8948 2.5700 3.1016 35 1 1.3320 0.9831 2.5241 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260503506.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:59 Heat of formation + Delta-G solvation = 55.261795 kcal Electronic energy + Delta-G solvation = -17109.516446 eV Core-core repulsion = 14493.544387 eV Total energy + Delta-G solvation = -2615.972059 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.24222 -38.51005 -35.53627 -35.00251 -33.25653 -32.94454 -29.85693 -28.50218 -27.99394 -25.12459 -24.56469 -23.04894 -22.33590 -19.64896 -18.51354 -17.96432 -17.48212 -16.72574 -16.55228 -16.20015 -15.23238 -14.99809 -14.62735 -14.54071 -14.08941 -13.92474 -13.63002 -13.37102 -13.25942 -12.99037 -12.71861 -12.63666 -12.36112 -12.20702 -12.15849 -11.90212 -11.75494 -11.58262 -10.83685 -10.70683 -10.61225 -9.39081 -8.39889 -8.09176 -6.33076 -0.12974 1.01167 1.32532 1.36257 1.46787 1.59132 1.61823 2.37774 3.08128 3.09093 3.36851 3.55077 3.97436 4.16225 4.23758 4.31170 4.38241 4.41718 4.56657 4.60063 4.62948 4.78282 4.80076 4.99367 5.05773 5.10206 5.25535 5.28493 5.39734 5.46404 5.64160 5.75633 5.80177 6.04167 6.09023 6.18328 6.27615 6.76897 6.85372 7.33696 8.89565 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.026514 B = 0.006653 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.773385 B = 4207.473769 C = 4817.344665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C 0.111 3.889 4 C -0.229 4.229 5 C -0.055 4.055 6 C -0.154 4.154 7 C -0.107 4.107 8 C -0.072 4.072 9 C 0.071 3.929 10 C -0.518 4.518 11 H 0.043 0.957 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.083 3.917 19 N -0.357 5.357 20 N -0.330 5.330 21 C 0.078 3.922 22 H 0.094 0.906 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.160 0.840 28 H 0.152 0.848 29 H 0.118 0.882 30 H -0.014 1.014 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 -20.884 0.344 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.027 4.027 4 C -0.239 4.239 5 C -0.075 4.075 6 C -0.173 4.173 7 C -0.129 4.129 8 C -0.075 4.075 9 C 0.034 3.966 10 C -0.556 4.556 11 H 0.061 0.939 12 C -0.195 4.195 13 N -0.573 5.573 14 Si 0.792 3.208 15 H -0.188 1.188 16 H -0.201 1.201 17 H -0.198 1.198 18 C -0.069 4.069 19 N -0.184 5.184 20 N -0.104 5.104 21 C -0.061 4.061 22 H 0.113 0.887 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.178 0.822 28 H 0.170 0.830 29 H 0.136 0.864 30 H 0.005 0.995 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.948 -20.062 1.727 22.035 hybrid contribution 0.937 0.760 -0.206 1.224 sum -8.012 -19.302 1.521 20.954 Atomic orbital electron populations 1.21746 0.92615 1.03735 1.02040 1.20486 0.97293 0.85269 1.06187 1.21921 0.98794 0.96437 0.85587 1.19832 1.14244 0.93910 0.95869 1.20468 0.98329 0.99809 0.88872 1.20744 1.03157 0.92504 1.00946 1.20664 0.99988 0.98701 0.93533 1.19335 1.00103 0.95331 0.92699 1.17882 0.95128 0.89349 0.94251 1.21243 0.93679 0.96029 1.44628 0.93885 1.25945 1.03709 0.94823 0.95035 1.70101 1.38002 1.01639 1.47513 0.85416 0.79033 0.77862 0.78521 1.18839 1.20091 1.19835 1.20982 0.98919 0.95850 0.91112 1.77821 1.28086 0.99153 1.13366 1.48931 1.44371 1.08779 1.08347 1.22425 1.05338 1.02303 0.76021 0.88699 0.93095 0.93074 0.87311 0.87807 0.82222 0.83035 0.86389 0.99541 0.97717 0.92590 0.88648 0.89411 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.05 -0.80 5.89 29.85 0.18 -0.62 16 3 C 0.11 3.19 6.23 42.23 0.26 3.46 16 4 C -0.23 -8.41 6.26 -20.23 -0.13 -8.54 16 5 C -0.06 -1.67 10.09 22.38 0.23 -1.44 16 6 C -0.15 -5.09 9.90 22.02 0.22 -4.87 16 7 C -0.11 -4.61 9.52 22.02 0.21 -4.40 16 8 C -0.07 -3.74 5.08 -19.75 -0.10 -3.84 16 9 C 0.07 4.36 5.12 29.10 0.15 4.51 16 10 C -0.52 -33.15 9.09 25.60 0.23 -32.91 16 11 H 0.04 2.76 7.74 -2.91 -0.02 2.74 16 12 C 0.00 0.14 5.46 84.65 0.46 0.60 16 13 N -0.93 -60.65 13.29 21.45 0.28 -60.36 16 14 Si 0.97 48.06 29.54 68.60 2.03 50.09 16 15 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 18 C 0.08 4.05 7.21 42.16 0.30 4.35 16 19 N -0.36 -17.20 12.54 -48.70 -0.61 -17.82 16 20 N -0.33 -11.01 3.95 -354.32 -1.40 -12.41 16 21 C 0.08 1.59 10.97 127.77 1.40 2.99 16 22 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 1.02 7.60 -2.39 -0.02 1.00 16 27 H 0.16 3.20 8.06 -2.92 -0.02 3.18 16 28 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.12 4.92 8.03 -2.91 -0.02 4.89 16 30 H -0.01 -0.93 8.13 -2.39 -0.02 -0.95 16 31 H 0.00 0.29 8.03 -2.39 -0.02 0.27 16 32 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.13 1.43 7.51 -2.39 -0.02 1.41 16 Total: -1.00 -86.16 301.67 5.49 -80.67 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.07 Total: 1.59 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 4.13 Total: -41.76 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -1.73 Total: -90.59 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -86.16 5.49 -80.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260503506.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.931 kcal (2) G-P(sol) polarization free energy of solvation -86.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds