Wall clock time and date at job start Mon Mar 30 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47204 * 2 1 4 4 N 1.30896 * 125.31228 * 89.97801 * 3 2 1 5 5 C 1.33405 * 109.87054 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.27446 * 179.97438 * 5 4 3 7 7 C 1.37999 * 107.45785 * 0.02562 * 5 4 3 8 8 C 1.40966 * 133.70606 * 180.02562 * 7 5 4 9 9 C 1.50703 * 120.41401 * 359.97226 * 8 7 5 10 10 C 1.50701 * 109.47064 * 84.99937 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.35881 * 119.17676 * 180.24695 * 8 7 5 19 19 C 1.40819 * 119.76672 * 359.52740 * 18 8 7 20 20 C 1.34668 * 120.61923 * 0.45592 * 19 18 8 21 21 N 1.35035 * 125.31362 * 269.97780 * 3 2 1 22 22 H 1.09003 * 109.47181 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46902 * 299.99654 * 1 2 3 24 24 H 1.08998 * 109.47542 * 59.99522 * 1 2 3 25 25 H 1.09003 * 109.46418 * 240.00171 * 2 1 3 26 26 H 1.08998 * 109.47542 * 120.00478 * 2 1 3 27 27 H 1.08999 * 109.47771 * 270.03568 * 6 5 4 28 28 H 1.08999 * 109.46647 * 30.02957 * 6 5 4 29 29 H 1.08995 * 109.47338 * 150.02705 * 6 5 4 30 30 H 1.09002 * 109.47152 * 325.00030 * 9 8 7 31 31 H 1.09001 * 109.46980 * 205.00131 * 9 8 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 33 33 H 1.07995 * 120.11597 * 179.74107 * 18 8 7 34 34 H 1.07998 * 119.68857 * 180.22995 * 19 18 8 35 35 H 1.07998 * 119.71793 * 179.77319 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2841 2.1343 1.0681 5 6 2.7134 3.3464 0.7129 6 6 3.1071 4.4619 1.6466 7 6 2.7299 3.3921 -0.6662 8 6 3.0819 4.3841 -1.6038 9 6 3.5606 5.7360 -1.1407 10 6 5.0415 5.6781 -0.8677 11 1 5.5821 4.7549 -1.0152 12 6 5.7065 6.8041 -0.4306 13 7 5.0482 7.9285 -0.2515 14 14 7.5422 6.7325 -0.0929 15 1 8.2599 6.3522 -1.3362 16 1 8.0139 8.0647 0.3636 17 1 7.8124 5.7238 0.9629 18 6 2.9790 4.1083 -2.9303 19 6 2.5342 2.8392 -3.3480 20 6 2.2006 1.8977 -2.4447 21 7 2.2929 2.1566 -1.1019 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.2331 5.0733 1.8712 28 1 3.5022 4.0398 2.5706 29 1 3.8707 5.0792 1.1735 30 1 3.0336 6.0151 -0.2283 31 1 3.3626 6.4766 -1.9156 32 1 5.5160 8.7205 0.0564 33 1 3.2406 4.8586 -3.6617 34 1 2.4564 2.6200 -4.4027 35 1 1.8578 0.9305 -2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260520819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:29 Heat of formation + Delta-G solvation = 61.494804 kcal Electronic energy + Delta-G solvation = -17421.589433 eV Core-core repulsion = 14805.887658 eV Total energy + Delta-G solvation = -2615.701775 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26588 -37.08296 -34.82853 -33.40282 -32.20841 -30.56872 -29.46980 -27.60145 -25.53209 -23.82695 -23.42344 -21.85450 -20.59833 -19.36129 -16.60522 -16.39610 -16.21697 -15.45187 -14.95710 -14.64872 -14.15339 -14.10067 -13.19880 -12.71236 -12.46977 -12.42086 -12.15512 -11.94426 -11.82234 -11.58658 -11.31110 -11.15632 -10.92087 -10.83777 -10.66557 -10.34013 -9.94865 -9.69527 -9.51622 -9.16603 -8.55527 -8.46713 -6.64138 -6.09190 -4.14364 1.48111 1.83983 3.14087 3.30351 3.34689 3.38332 3.52193 4.09183 4.42407 4.60851 4.88789 4.98416 5.22447 5.29208 5.31283 5.44722 5.47918 5.63421 5.70297 5.76745 5.96505 6.03914 6.16836 6.24418 6.38746 6.53322 6.62941 6.76364 6.93853 7.01098 7.21544 7.33047 7.53238 7.64680 7.79732 7.85194 8.21480 8.50507 8.89442 9.49235 10.99066 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.006988 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.204222 B = 4005.875839 C = 4456.544058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 C 0.142 3.858 4 N -0.460 5.460 5 C 0.030 3.970 6 C -0.079 4.079 7 C 0.007 3.993 8 C 0.030 3.970 9 C 0.048 3.952 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.064 3.936 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.179 4.179 19 C -0.105 4.105 20 C -0.005 4.005 21 N -0.357 5.357 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 -11.628 -3.197 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.112 4.112 4 N -0.176 5.176 5 C -0.106 4.106 6 C -0.136 4.136 7 C -0.101 4.101 8 C 0.028 3.972 9 C 0.011 3.989 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.199 4.199 19 C -0.126 4.126 20 C -0.124 4.124 21 N -0.027 5.027 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.130 0.870 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.978 -11.883 -2.345 13.979 hybrid contribution 1.123 0.177 -0.857 1.424 sum -5.855 -11.706 -3.202 13.474 Atomic orbital electron populations 1.21750 0.94538 1.01598 1.02500 1.19778 0.95887 0.87540 1.03335 1.22826 1.11333 0.97045 0.79989 1.69784 1.15987 1.04149 1.27659 1.20999 1.05354 0.94119 0.90130 1.20388 1.02409 0.93979 0.96843 1.19474 1.08952 0.86548 0.95102 1.20189 0.89396 0.96537 0.91108 1.18477 0.96455 0.85922 0.98016 1.20862 0.91930 0.96509 1.45538 0.92613 1.24946 0.98353 0.95258 0.95272 1.69933 1.36169 1.00847 1.45831 0.86624 0.85155 0.77268 0.78877 1.20214 1.21128 1.19994 1.20826 1.06200 0.97004 0.95909 1.20749 0.99350 0.93584 0.98940 1.21188 1.09163 1.01329 0.80754 1.42544 1.42075 1.12351 1.05744 0.92068 0.91931 0.93018 0.91069 0.89114 0.92172 0.92316 0.86983 0.93818 0.94706 0.92608 0.85206 0.84605 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.03 -0.33 6.38 -27.89 -0.18 -0.51 16 3 C 0.14 2.56 7.21 -155.09 -1.12 1.44 16 4 N -0.46 -9.53 11.19 -6.40 -0.07 -9.60 16 5 C 0.03 0.67 7.21 -82.00 -0.59 0.08 16 6 C -0.08 -1.65 9.22 36.00 0.33 -1.32 16 7 C 0.01 0.16 6.64 -84.09 -0.56 -0.40 16 8 C 0.03 0.66 5.09 -104.43 -0.53 0.13 16 9 C 0.05 1.20 4.45 -29.03 -0.13 1.07 16 10 C -0.51 -13.68 7.68 -34.44 -0.26 -13.95 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 14 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.18 -3.38 9.70 -39.45 -0.38 -3.77 16 19 C -0.11 -1.61 9.97 -39.87 -0.40 -2.01 16 20 C -0.01 -0.08 10.80 -16.48 -0.18 -0.26 16 21 N -0.36 -6.70 2.94 -58.16 -0.17 -6.87 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.11 2.63 4.91 -51.93 -0.25 2.37 16 30 H 0.04 1.12 6.09 -51.93 -0.32 0.81 16 31 H 0.03 0.90 8.05 -51.93 -0.42 0.48 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.13 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.15 1.69 7.98 -52.49 -0.42 1.27 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -30.32 294.09 -8.57 -38.89 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.75 Total: 0.51 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.73 Total: -19.08 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.49 Total: -40.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.32 -8.57 -38.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.386 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds