Wall clock time and date at job start Mon Mar 30 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47204 * 2 1 4 4 N 1.30896 * 125.31228 * 89.97801 * 3 2 1 5 5 C 1.33405 * 109.87054 * 179.97438 * 4 3 2 6 6 C 1.50696 * 126.27446 * 179.97438 * 5 4 3 7 7 C 1.37999 * 107.45785 * 0.02562 * 5 4 3 8 8 C 1.40966 * 133.70606 * 180.02562 * 7 5 4 9 9 C 1.50703 * 120.41401 * 359.97226 * 8 7 5 10 10 C 1.50701 * 109.47064 * 84.99937 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.35881 * 119.17676 * 180.24695 * 8 7 5 19 19 C 1.40819 * 119.76672 * 359.52740 * 18 8 7 20 20 C 1.34668 * 120.61923 * 0.45592 * 19 18 8 21 21 N 1.35035 * 125.31362 * 269.97780 * 3 2 1 22 22 H 1.09003 * 109.47181 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46902 * 299.99654 * 1 2 3 24 24 H 1.08998 * 109.47542 * 59.99522 * 1 2 3 25 25 H 1.09003 * 109.46418 * 240.00171 * 2 1 3 26 26 H 1.08998 * 109.47542 * 120.00478 * 2 1 3 27 27 H 1.08999 * 109.47771 * 270.03568 * 6 5 4 28 28 H 1.08999 * 109.46647 * 30.02957 * 6 5 4 29 29 H 1.08995 * 109.47338 * 150.02705 * 6 5 4 30 30 H 1.09002 * 109.47152 * 325.00030 * 9 8 7 31 31 H 1.09001 * 109.46980 * 205.00131 * 9 8 7 32 32 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 33 33 H 1.07995 * 120.11597 * 179.74107 * 18 8 7 34 34 H 1.07998 * 119.68857 * 180.22995 * 19 18 8 35 35 H 1.07998 * 119.71793 * 179.77319 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2841 2.1343 1.0681 5 6 2.7134 3.3464 0.7129 6 6 3.1071 4.4619 1.6466 7 6 2.7299 3.3921 -0.6662 8 6 3.0819 4.3841 -1.6038 9 6 3.5606 5.7360 -1.1407 10 6 5.0415 5.6781 -0.8677 11 1 5.5821 4.7549 -1.0152 12 6 5.7065 6.8041 -0.4306 13 7 5.0482 7.9285 -0.2515 14 14 7.5422 6.7325 -0.0929 15 1 8.2599 6.3522 -1.3362 16 1 8.0139 8.0647 0.3636 17 1 7.8124 5.7238 0.9629 18 6 2.9790 4.1083 -2.9303 19 6 2.5342 2.8392 -3.3480 20 6 2.2006 1.8977 -2.4447 21 7 2.2929 2.1566 -1.1019 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.2331 5.0733 1.8712 28 1 3.5022 4.0398 2.5706 29 1 3.8707 5.0792 1.1735 30 1 3.0336 6.0151 -0.2283 31 1 3.3626 6.4766 -1.9156 32 1 5.5160 8.7205 0.0564 33 1 3.2406 4.8586 -3.6617 34 1 2.4564 2.6200 -4.4027 35 1 1.8578 0.9305 -2.7812 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:28 Heat of formation + Delta-G solvation = 45.379935 kcal Electronic energy + Delta-G solvation = -17422.288227 eV Core-core repulsion = 14805.887658 eV Total energy + Delta-G solvation = -2616.400568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = -0.40 seconds Orbital eigenvalues (eV) -43.70815 -38.52095 -36.42219 -34.85594 -33.80056 -32.06400 -30.99938 -29.37584 -26.98391 -25.53252 -24.66226 -23.43255 -22.03807 -20.78128 -18.50590 -18.00473 -17.61904 -16.90063 -16.64102 -16.15970 -15.38184 -15.23964 -14.58297 -14.37832 -14.12541 -14.00269 -13.71289 -13.44444 -13.32643 -13.01580 -12.78574 -12.57938 -12.36027 -12.27629 -12.22836 -11.95188 -11.74378 -11.53513 -11.10799 -10.87698 -10.57534 -10.03022 -8.27175 -8.01793 -6.29556 0.06132 0.41638 1.40184 1.41950 1.49789 1.78749 2.07289 2.38742 2.65167 3.12976 3.39227 3.67190 3.83548 4.06497 4.09775 4.28238 4.33529 4.37475 4.39228 4.70805 4.80569 4.83585 4.94099 4.98591 5.03161 5.14390 5.16978 5.31269 5.33070 5.36618 5.39484 5.65124 5.74906 5.85283 5.89587 6.17774 6.46136 6.78911 7.01285 7.37200 8.90456 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.006988 C = 0.006281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.204222 B = 4005.875839 C = 4456.544058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.153 3.847 4 N -0.485 5.485 5 C -0.011 4.011 6 C -0.068 4.068 7 C -0.011 4.011 8 C -0.023 4.023 9 C 0.062 3.938 10 C -0.516 4.516 11 H 0.044 0.956 12 C 0.018 3.982 13 N -0.921 5.921 14 Si 0.953 3.047 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.274 1.274 18 C -0.161 4.161 19 C -0.113 4.113 20 C 0.011 3.989 21 N -0.365 5.365 22 H 0.094 0.906 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.020 0.980 31 H 0.012 0.988 32 H 0.266 0.734 33 H 0.134 0.866 34 H 0.187 0.813 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 -14.835 -5.018 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.102 4.102 4 N -0.201 5.201 5 C -0.145 4.145 6 C -0.126 4.126 7 C -0.120 4.120 8 C -0.025 4.025 9 C 0.025 3.975 10 C -0.554 4.554 11 H 0.062 0.938 12 C -0.181 4.181 13 N -0.561 5.561 14 Si 0.778 3.222 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.199 1.199 18 C -0.182 4.182 19 C -0.133 4.133 20 C -0.106 4.106 21 N -0.036 5.036 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.204 0.796 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.371 -15.083 -4.166 17.297 hybrid contribution 1.152 1.049 -0.378 1.604 sum -6.219 -14.033 -4.544 16.008 Atomic orbital electron populations 1.21714 0.93032 1.03492 1.01531 1.20099 0.96973 0.84140 1.05294 1.23925 1.08752 0.98433 0.79105 1.69734 1.17038 1.03981 1.29394 1.21061 1.07738 0.94983 0.90759 1.20171 1.01532 0.93905 0.96959 1.19417 1.09576 0.87973 0.95017 1.19876 0.94102 0.95731 0.92786 1.18116 0.95440 0.87748 0.96195 1.21030 0.93208 0.95944 1.45208 0.93814 1.25691 1.02495 0.94897 0.95049 1.70038 1.37805 1.01442 1.46785 0.85685 0.80243 0.77444 0.78834 1.19428 1.20336 1.19894 1.21157 1.03530 0.98905 0.94603 1.21212 0.98867 0.91619 1.01586 1.22200 1.06104 1.03298 0.79044 1.42810 1.42149 1.11261 1.07336 0.88703 0.93906 0.93047 0.87827 0.88420 0.92044 0.91509 0.90038 0.96160 0.96956 0.92479 0.84795 0.79572 0.77869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.03 -0.56 6.38 29.85 0.19 -0.37 16 3 C 0.15 5.21 7.21 138.02 1.00 6.21 16 4 N -0.49 -20.18 11.19 -174.16 -1.95 -22.13 16 5 C -0.01 -0.49 7.21 42.26 0.30 -0.19 16 6 C -0.07 -3.06 9.22 71.23 0.66 -2.40 16 7 C -0.01 -0.48 6.64 38.77 0.26 -0.22 16 8 C -0.02 -1.04 5.09 -19.74 -0.10 -1.14 16 9 C 0.06 3.29 4.45 29.10 0.13 3.42 16 10 C -0.52 -28.96 7.68 25.60 0.20 -28.76 16 11 H 0.04 2.50 7.74 -2.91 -0.02 2.47 16 12 C 0.02 1.00 5.46 84.66 0.46 1.47 16 13 N -0.92 -53.94 13.29 21.45 0.28 -53.65 16 14 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 18 C -0.16 -5.94 9.70 22.35 0.22 -5.72 16 19 C -0.11 -2.99 9.97 22.08 0.22 -2.77 16 20 C 0.01 0.30 10.80 83.06 0.90 1.20 16 21 N -0.36 -12.93 2.94 -337.92 -0.99 -13.92 16 22 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.59 8.04 -2.39 -0.02 1.57 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.08 4.14 4.91 -2.39 -0.01 4.13 16 30 H 0.02 1.14 6.09 -2.39 -0.01 1.12 16 31 H 0.01 0.67 8.05 -2.39 -0.02 0.66 16 32 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.20 3.08 7.98 -2.91 -0.02 3.06 16 Total: -1.00 -70.29 294.09 5.58 -64.70 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.08 Total: 9.97 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 5.14 Total: -31.09 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -2.66 Total: -89.70 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.29 5.58 -64.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.083 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.40 seconds