Wall clock time and date at job start Mon Mar 30 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47470 * 2 1 4 4 N 1.30909 * 125.31309 * 264.82787 * 3 2 1 5 5 C 1.33401 * 109.86957 * 180.02562 * 4 3 2 6 6 C 1.38001 * 107.46159 * 359.97438 * 5 4 3 7 7 C 1.40963 * 133.71054 * 180.02562 * 6 5 4 8 8 C 1.35889 * 119.17468 * 180.02562 * 7 6 5 9 9 C 1.40813 * 119.76961 * 359.73866 * 8 7 6 10 10 C 1.34667 * 120.62007 * 0.53693 * 9 8 7 11 11 C 1.50700 * 119.72237 * 179.73017 * 10 9 8 12 12 H 1.08998 * 109.46949 * 156.69279 * 11 10 9 13 13 C 1.53001 * 109.47363 * 276.69581 * 11 10 9 14 14 C 1.50703 * 109.46740 * 36.69590 * 11 10 9 15 15 H 1.07999 * 120.00291 * 354.60385 * 14 11 10 16 16 C 1.37876 * 119.99806 * 174.61012 * 14 11 10 17 17 N 1.31519 * 119.99985 * 160.40090 * 16 14 11 18 18 Si 1.86794 * 120.00138 * 340.39785 * 16 14 11 19 19 H 1.48502 * 109.47361 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.47107 * 60.00264 * 18 16 14 21 21 H 1.48500 * 109.47628 * 300.00537 * 18 16 14 22 22 N 1.35037 * 125.31273 * 84.88062 * 3 2 1 23 23 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47116 * 300.00186 * 1 2 3 25 25 H 1.08999 * 109.46896 * 59.99715 * 1 2 3 26 26 H 1.09000 * 109.47116 * 239.99814 * 2 1 3 27 27 H 1.09004 * 109.47363 * 120.00260 * 2 1 3 28 28 H 1.07998 * 126.27289 * 180.02562 * 5 4 3 29 29 H 1.07996 * 120.41382 * 0.02562 * 7 6 5 30 30 H 1.07999 * 120.10638 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.68792 * 180.28837 * 9 8 7 32 32 H 1.09001 * 109.47018 * 294.43747 * 13 11 10 33 33 H 1.09002 * 109.46975 * 54.43163 * 13 11 10 34 34 H 1.09000 * 109.47178 * 174.43253 * 13 11 10 35 35 H 0.97002 * 120.00054 * 354.93129 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3755 2.1021 -1.0639 5 6 2.7745 3.3248 -0.7100 6 6 2.6733 3.4122 0.6635 7 6 2.9444 4.4328 1.5972 8 6 2.7338 4.1949 2.9185 9 6 2.2451 2.9413 3.3339 10 6 1.9942 1.9707 2.4348 11 6 1.4773 0.6345 2.9024 12 1 0.9531 0.1411 2.0839 13 6 2.6510 -0.2364 3.3550 14 6 0.5290 0.8385 4.0558 15 1 0.3880 1.8255 4.4709 16 6 -0.1585 -0.2350 4.5811 17 7 -0.6715 -0.1595 5.7897 18 14 -0.3614 -1.7964 3.5761 19 1 -1.1341 -2.7930 4.3604 20 1 0.9764 -2.3523 3.2496 21 1 -1.0883 -1.4852 2.3191 22 7 2.1999 2.1895 1.0975 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.1137 4.1041 -1.3764 29 1 3.3149 5.3918 1.2667 30 1 2.9369 4.9659 3.6469 31 1 2.0737 2.7552 4.3838 32 1 3.2847 -0.4659 2.4984 33 1 3.2334 0.2997 4.1045 34 1 2.2711 -1.1633 3.7847 35 1 -0.5042 0.6217 6.3398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:12 Heat of formation + Delta-G solvation = 73.972373 kcal Electronic energy + Delta-G solvation = -18050.332664 eV Core-core repulsion = 15435.171957 eV Total energy + Delta-G solvation = -2615.160707 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42691 -37.40997 -35.40673 -33.12996 -32.32089 -31.25837 -29.51537 -27.08127 -24.91576 -23.75278 -23.24723 -22.02991 -20.98063 -19.22295 -17.69595 -16.70207 -16.12965 -15.49343 -15.13716 -14.46259 -14.31737 -13.83313 -13.53221 -13.35450 -12.58863 -12.51515 -12.17410 -12.00434 -11.68883 -11.59261 -11.21012 -10.98068 -10.79596 -10.74178 -10.50385 -10.17100 -9.95382 -9.89913 -9.80665 -9.07811 -8.64508 -8.39184 -6.90811 -6.61464 -4.27896 1.35586 1.77582 3.11336 3.24947 3.31008 3.45369 3.47421 3.93187 4.34457 4.73084 4.99347 5.03844 5.12733 5.23638 5.43425 5.51995 5.58499 5.61645 5.73672 5.94418 6.08797 6.13051 6.21410 6.28254 6.32556 6.41801 6.44212 6.58612 6.67107 6.74015 6.86948 7.00902 7.09138 7.26683 7.59069 7.91294 8.19021 8.32803 8.67354 9.38398 10.73779 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.010251 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.627163 B = 2730.766033 C = 3542.171007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.044 4.044 3 C 0.165 3.835 4 N -0.457 5.457 5 C -0.045 4.045 6 C 0.004 3.996 7 C -0.115 4.115 8 C -0.105 4.105 9 C -0.150 4.150 10 C 0.137 3.863 11 C 0.034 3.966 12 H 0.058 0.942 13 C -0.145 4.145 14 C -0.604 4.604 15 H 0.067 0.933 16 C 0.042 3.958 17 N -0.893 5.893 18 Si 1.024 2.976 19 H -0.283 1.283 20 H -0.272 1.272 21 H -0.274 1.274 22 N -0.355 5.355 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.173 0.827 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 3.593 -7.485 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.083 4.083 3 C -0.090 4.090 4 N -0.171 5.171 5 C -0.199 4.199 6 C -0.106 4.106 7 C -0.134 4.134 8 C -0.126 4.126 9 C -0.170 4.170 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.075 0.925 13 C -0.203 4.203 14 C -0.641 4.641 15 H 0.085 0.915 16 C -0.165 4.165 17 N -0.526 5.526 18 Si 0.851 3.149 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.200 1.200 22 N -0.025 5.025 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.190 0.810 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.097 1.645 -8.273 9.855 hybrid contribution 0.785 2.141 0.911 2.455 sum 5.882 3.786 -7.362 10.155 Atomic orbital electron populations 1.21943 0.94058 1.02474 1.02913 1.20183 0.96600 0.87425 1.04054 1.22954 1.09294 0.96847 0.79910 1.69864 1.14763 1.04849 1.27659 1.22314 1.10877 0.96148 0.90575 1.19712 1.07773 0.87556 0.95535 1.20279 1.03680 0.97611 0.91876 1.21134 0.98648 0.97250 0.95556 1.20735 1.03192 0.91998 1.01034 1.21052 0.96514 0.99854 0.79075 1.18684 0.94659 0.86665 0.98542 0.92498 1.22254 0.98037 1.00711 0.99299 1.21918 1.28183 0.97252 1.16773 0.91473 1.25664 0.93023 1.01637 0.96136 1.70852 1.43702 1.30913 1.07089 0.84382 0.77401 0.76616 0.76495 1.20829 1.19834 1.19998 1.42923 1.41019 1.11857 1.06656 0.91663 0.91299 0.92311 0.89242 0.89312 0.80988 0.84615 0.85417 0.83015 0.95658 0.93128 0.91724 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.27 37.16 0.34 -2.29 16 2 C -0.04 -0.75 5.55 -27.88 -0.15 -0.91 16 3 C 0.17 3.22 7.19 -155.08 -1.11 2.11 16 4 N -0.46 -8.82 11.19 -10.11 -0.11 -8.93 16 5 C -0.04 -0.79 12.02 -16.96 -0.20 -0.99 16 6 C 0.00 0.07 6.80 -84.09 -0.57 -0.50 16 7 C -0.11 -1.80 10.11 -39.39 -0.40 -2.20 16 8 C -0.10 -1.68 10.07 -39.45 -0.40 -2.08 16 9 C -0.15 -2.89 8.79 -39.87 -0.35 -3.24 16 10 C 0.14 2.86 5.78 -81.52 -0.47 2.39 16 11 C 0.03 0.75 1.42 -92.92 -0.13 0.62 16 12 H 0.06 1.23 1.57 -51.93 -0.08 1.15 16 13 C -0.15 -2.99 8.47 37.16 0.31 -2.67 16 14 C -0.60 -15.40 8.19 -34.44 -0.28 -15.69 16 15 H 0.07 1.83 6.50 -52.49 -0.34 1.49 16 16 C 0.04 1.13 5.27 -17.82 -0.09 1.03 16 17 N -0.89 -25.58 13.70 55.43 0.76 -24.82 16 18 Si 1.02 23.03 26.35 -169.99 -4.48 18.55 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -5.58 5.85 56.52 0.33 -5.25 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 N -0.35 -7.16 2.94 -54.00 -0.16 -7.32 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.34 6.87 -51.93 -0.36 0.98 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.09 1.56 4.93 -51.93 -0.26 1.31 16 28 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.15 3.01 6.64 -52.49 -0.35 2.66 16 32 H 0.02 0.46 7.47 -51.93 -0.39 0.07 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.36 5.05 -51.93 -0.26 1.10 16 35 H 0.27 7.70 8.73 -40.82 -0.36 7.34 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -28.92 277.68 -7.54 -36.46 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -4.22 Total: 6.31 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -3.51 Total: -24.43 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.49 Total: -41.07 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.48 Total: 18.55 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.92 -7.54 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.431 kcal (2) G-P(sol) polarization free energy of solvation -28.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds