Wall clock time and date at job start Mon Mar 30 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47470 * 2 1 4 4 N 1.30909 * 125.31309 * 264.82787 * 3 2 1 5 5 C 1.33401 * 109.86957 * 180.02562 * 4 3 2 6 6 C 1.38001 * 107.46159 * 359.97438 * 5 4 3 7 7 C 1.40963 * 133.71054 * 180.02562 * 6 5 4 8 8 C 1.35889 * 119.17468 * 180.02562 * 7 6 5 9 9 C 1.40813 * 119.76961 * 359.73866 * 8 7 6 10 10 C 1.34667 * 120.62007 * 0.53693 * 9 8 7 11 11 C 1.50700 * 119.72237 * 179.73017 * 10 9 8 12 12 H 1.08998 * 109.46949 * 156.69279 * 11 10 9 13 13 C 1.53001 * 109.47363 * 276.69581 * 11 10 9 14 14 C 1.50703 * 109.46740 * 36.69590 * 11 10 9 15 15 H 1.07999 * 120.00291 * 354.60385 * 14 11 10 16 16 C 1.37876 * 119.99806 * 174.61012 * 14 11 10 17 17 N 1.31519 * 119.99985 * 160.40090 * 16 14 11 18 18 Si 1.86794 * 120.00138 * 340.39785 * 16 14 11 19 19 H 1.48502 * 109.47361 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.47107 * 60.00264 * 18 16 14 21 21 H 1.48500 * 109.47628 * 300.00537 * 18 16 14 22 22 N 1.35037 * 125.31273 * 84.88062 * 3 2 1 23 23 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47116 * 300.00186 * 1 2 3 25 25 H 1.08999 * 109.46896 * 59.99715 * 1 2 3 26 26 H 1.09000 * 109.47116 * 239.99814 * 2 1 3 27 27 H 1.09004 * 109.47363 * 120.00260 * 2 1 3 28 28 H 1.07998 * 126.27289 * 180.02562 * 5 4 3 29 29 H 1.07996 * 120.41382 * 0.02562 * 7 6 5 30 30 H 1.07999 * 120.10638 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.68792 * 180.28837 * 9 8 7 32 32 H 1.09001 * 109.47018 * 294.43747 * 13 11 10 33 33 H 1.09002 * 109.46975 * 54.43163 * 13 11 10 34 34 H 1.09000 * 109.47178 * 174.43253 * 13 11 10 35 35 H 0.97002 * 120.00054 * 354.93129 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3755 2.1021 -1.0639 5 6 2.7745 3.3248 -0.7100 6 6 2.6733 3.4122 0.6635 7 6 2.9444 4.4328 1.5972 8 6 2.7338 4.1949 2.9185 9 6 2.2451 2.9413 3.3339 10 6 1.9942 1.9707 2.4348 11 6 1.4773 0.6345 2.9024 12 1 0.9531 0.1411 2.0839 13 6 2.6510 -0.2364 3.3550 14 6 0.5290 0.8385 4.0558 15 1 0.3880 1.8255 4.4709 16 6 -0.1585 -0.2350 4.5811 17 7 -0.6715 -0.1595 5.7897 18 14 -0.3614 -1.7964 3.5761 19 1 -1.1341 -2.7930 4.3604 20 1 0.9764 -2.3523 3.2496 21 1 -1.0883 -1.4852 2.3191 22 7 2.1999 2.1895 1.0975 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.1137 4.1041 -1.3764 29 1 3.3149 5.3918 1.2667 30 1 2.9369 4.9659 3.6469 31 1 2.0737 2.7552 4.3838 32 1 3.2847 -0.4659 2.4984 33 1 3.2334 0.2997 4.1045 34 1 2.2711 -1.1633 3.7847 35 1 -0.5042 0.6217 6.3398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523646.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:11 Heat of formation + Delta-G solvation = 58.331689 kcal Electronic energy + Delta-G solvation = -18051.010895 eV Core-core repulsion = 15435.171957 eV Total energy + Delta-G solvation = -2615.838938 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.82433 -38.88334 -36.91766 -34.84357 -33.68403 -32.98361 -30.98219 -28.47139 -26.79937 -25.22383 -24.63789 -23.39944 -22.58361 -20.72256 -19.60724 -18.13157 -17.56717 -16.92719 -16.52289 -16.00125 -15.89487 -15.23187 -15.14252 -14.75736 -14.33030 -14.05093 -13.66030 -13.47556 -13.30614 -13.05469 -12.62210 -12.43444 -12.42224 -12.22756 -12.02224 -11.71170 -11.59334 -11.45684 -11.28237 -10.99032 -10.42656 -10.07133 -8.78257 -8.23392 -6.37751 -0.00482 0.36450 1.45352 1.51434 1.68695 1.70928 2.05161 2.48400 2.55922 3.02111 3.41393 3.60501 3.74723 3.93939 4.08170 4.22411 4.26488 4.29206 4.40871 4.46037 4.63371 4.70954 4.72360 4.87593 4.91923 4.94162 5.00131 5.12839 5.24566 5.34250 5.40150 5.44998 5.70195 5.80522 5.85628 6.04101 6.33878 6.54100 6.93156 7.35765 8.62294 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024564 B = 0.010251 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.627163 B = 2730.766033 C = 3542.171007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 C 0.146 3.854 4 N -0.472 5.472 5 C -0.038 4.038 6 C -0.023 4.023 7 C -0.094 4.094 8 C -0.118 4.118 9 C -0.150 4.150 10 C 0.101 3.899 11 C 0.035 3.965 12 H 0.067 0.933 13 C -0.140 4.140 14 C -0.597 4.597 15 H 0.036 0.964 16 C -0.005 4.005 17 N -0.931 5.931 18 Si 1.051 2.949 19 H -0.293 1.293 20 H -0.239 1.239 21 H -0.251 1.251 22 N -0.363 5.363 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.209 0.791 29 H 0.181 0.819 30 H 0.163 0.837 31 H 0.134 0.866 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 4.141 -9.860 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.084 4.084 3 C -0.108 4.108 4 N -0.187 5.187 5 C -0.192 4.192 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.138 4.138 9 C -0.170 4.170 10 C 0.000 4.000 11 C 0.016 3.984 12 H 0.084 0.916 13 C -0.198 4.198 14 C -0.635 4.635 15 H 0.054 0.946 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.872 3.128 19 H -0.219 1.219 20 H -0.163 1.163 21 H -0.175 1.175 22 N -0.034 5.034 23 H 0.104 0.896 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.132 0.868 27 H 0.101 0.899 28 H 0.226 0.774 29 H 0.199 0.801 30 H 0.180 0.820 31 H 0.151 0.849 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.448 2.209 -10.659 12.652 hybrid contribution 0.414 2.145 1.604 2.710 sum 6.862 4.354 -9.055 12.167 Atomic orbital electron populations 1.21906 0.94041 1.03412 1.01633 1.20276 0.96569 0.86665 1.04886 1.23423 1.09703 0.97767 0.79954 1.69900 1.15415 1.05732 1.27633 1.22995 1.09204 0.96228 0.90785 1.20340 1.08505 0.87765 0.96556 1.20824 1.00985 0.98443 0.91010 1.21408 0.98938 0.96598 0.96878 1.20828 1.02623 0.93510 1.00050 1.20794 0.99355 0.99809 0.80056 1.18550 0.94415 0.88220 0.97246 0.91590 1.22147 0.97733 0.99954 0.99956 1.22064 1.28333 0.95663 1.17401 0.94615 1.26919 0.92634 1.04787 0.96167 1.70973 1.46323 1.30792 1.08518 0.84092 0.79310 0.73339 0.76077 1.21930 1.16269 1.17497 1.42972 1.41396 1.12780 1.06231 0.89603 0.94465 0.91589 0.86844 0.89911 0.77409 0.80147 0.81980 0.84871 0.93453 0.93656 0.92328 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.27 71.98 0.67 -4.19 16 2 C -0.05 -1.47 5.55 29.85 0.17 -1.30 16 3 C 0.15 5.44 7.19 138.01 0.99 6.43 16 4 N -0.47 -17.03 11.19 -185.91 -2.08 -19.11 16 5 C -0.04 -1.20 12.02 84.40 1.01 -0.18 16 6 C -0.02 -0.78 6.80 38.76 0.26 -0.51 16 7 C -0.09 -2.60 10.11 22.39 0.23 -2.37 16 8 C -0.12 -3.52 10.07 22.35 0.23 -3.29 16 9 C -0.15 -5.79 8.79 22.08 0.19 -5.60 16 10 C 0.10 4.22 5.78 40.92 0.24 4.46 16 11 C 0.04 1.54 1.42 -12.28 -0.02 1.53 16 12 H 0.07 2.81 1.57 -2.39 0.00 2.81 16 13 C -0.14 -5.67 8.47 71.98 0.61 -5.06 16 14 C -0.60 -31.42 8.19 25.60 0.21 -31.21 16 15 H 0.04 2.05 6.50 -2.91 -0.02 2.04 16 16 C -0.01 -0.28 5.27 84.65 0.45 0.16 16 17 N -0.93 -55.48 13.70 21.45 0.29 -55.18 16 18 Si 1.05 45.88 26.35 68.60 1.81 47.69 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 20 H -0.24 -9.08 5.85 99.48 0.58 -8.49 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 22 N -0.36 -14.18 2.94 -324.75 -0.96 -15.13 16 23 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.04 1.41 6.87 -2.39 -0.02 1.39 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.08 2.75 4.93 -2.38 -0.01 2.74 16 28 H 0.21 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.13 5.53 6.64 -2.91 -0.02 5.51 16 32 H 0.05 1.68 7.47 -2.39 -0.02 1.66 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 2.40 5.05 -2.39 -0.01 2.39 16 35 H 0.26 15.43 8.73 -92.71 -0.81 14.63 16 Total: -1.00 -64.43 277.68 5.24 -59.20 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.94 Total: 23.69 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 5.23 Total: -41.15 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.74 Total: -89.43 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.81 Total: 47.69 kcal Total: -64.43 5.24 -59.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523646.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.530 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds