Wall clock time and date at job start Mon Mar 30 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 C 1.50700 * 109.47034 * 120.00178 * 2 1 3 5 5 N 1.30237 * 125.74965 * 300.02427 * 4 2 1 6 6 N 1.40009 * 109.63598 * 179.97438 * 5 4 2 7 7 C 1.46507 * 125.89266 * 180.02562 * 6 5 4 8 8 C 1.36385 * 108.21226 * 359.97438 * 6 5 4 9 9 C 1.40417 * 106.80944 * 359.76102 * 8 6 5 10 10 C 1.40337 * 119.74349 * 179.70877 * 9 8 6 11 11 C 1.38052 * 120.27028 * 0.47411 * 10 9 8 12 12 C 1.38036 * 120.84975 * 359.77061 * 11 10 9 13 13 C 1.40557 * 120.29013 * 0.02562 * 12 11 10 14 14 C 1.40891 * 120.32912 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00537 * 206.13075 * 14 13 12 16 16 C 1.39982 * 119.99593 * 26.12504 * 14 13 12 17 17 N 1.30835 * 120.00093 * 17.50447 * 16 14 13 18 18 Si 1.86800 * 119.99944 * 197.50256 * 16 14 13 19 19 H 1.48505 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47226 * 120.00084 * 18 16 14 21 21 H 1.48493 * 109.47418 * 240.00205 * 18 16 14 22 22 H 1.08999 * 109.47476 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47022 * 60.00168 * 1 2 3 24 24 H 1.09002 * 109.47640 * 300.00116 * 1 2 3 25 25 H 1.09008 * 109.47343 * 240.00228 * 2 1 3 26 26 H 1.09008 * 109.46753 * 59.99866 * 3 2 1 27 27 H 1.09000 * 109.47315 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47109 * 299.99935 * 3 2 1 29 29 H 1.09004 * 109.47260 * 95.82139 * 7 6 5 30 30 H 1.09002 * 109.46828 * 215.81503 * 7 6 5 31 31 H 1.08995 * 109.47059 * 335.81988 * 7 6 5 32 32 H 1.07997 * 119.86586 * 180.19780 * 10 9 8 33 33 H 1.08004 * 119.57551 * 179.74837 * 11 10 9 34 34 H 1.08002 * 119.85908 * 179.97438 * 12 11 10 35 35 H 0.97004 * 119.99905 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 7 1.7872 -0.3648 2.4620 6 7 2.4184 -1.2582 3.3359 7 6 2.3772 -1.2019 4.7993 8 6 3.0772 -2.1906 2.5897 9 6 2.8445 -1.8708 1.2424 10 6 3.4101 -2.6626 0.2312 11 6 4.1846 -3.7581 0.5564 12 6 4.4207 -4.0918 1.8749 13 6 3.8723 -3.3168 2.9114 14 6 4.1123 -3.6569 4.2574 15 1 3.4048 -3.3701 5.0213 16 6 5.2679 -4.3666 4.6046 17 7 6.2773 -4.4197 3.7740 18 14 5.3686 -5.2379 6.2539 19 1 4.1041 -5.0266 7.0034 20 1 5.5760 -6.6919 6.0338 21 1 6.5055 -4.6885 7.0354 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.6766 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.5925 -1.8634 5.1664 30 1 3.3387 -1.5203 5.2023 31 1 2.1699 -0.1804 5.1179 32 1 3.2350 -2.4166 -0.8057 33 1 4.6110 -4.3622 -0.2308 34 1 5.0287 -4.9525 2.1112 35 1 7.0782 -4.9112 4.0147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260524638.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:25 Heat of formation + Delta-G solvation = 65.016371 kcal Electronic energy + Delta-G solvation = -17453.091093 eV Core-core repulsion = 14837.542024 eV Total energy + Delta-G solvation = -2615.549069 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26809 -36.12385 -35.09797 -33.63070 -31.54606 -29.32776 -28.34271 -26.82159 -26.32992 -24.50017 -22.16257 -21.08586 -20.51960 -18.30614 -17.22729 -15.72202 -15.44940 -14.86840 -14.53528 -14.16625 -13.75032 -13.57175 -12.98832 -12.86979 -12.80941 -12.02378 -11.92003 -11.83116 -11.63322 -11.29097 -11.15732 -10.94397 -10.83392 -10.66863 -10.53784 -10.16844 -9.92374 -9.68734 -9.42361 -9.26467 -8.55715 -7.23971 -6.92466 -6.70396 -4.29463 2.26705 2.89410 3.02486 3.06503 3.09970 3.46567 3.65186 3.86427 4.60227 5.13105 5.25307 5.48635 5.57579 5.60616 5.82726 5.90144 5.97391 6.00800 6.10136 6.14468 6.20405 6.25567 6.39808 6.51174 6.57300 6.61778 6.76178 6.94501 7.01117 7.20123 7.42502 7.62154 7.87689 8.06747 8.14850 8.20331 8.51057 8.67941 8.77276 8.93763 10.12558 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.007188 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.877416 B = 3894.185220 C = 4479.286293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.068 3.932 5 N -0.281 5.281 6 N -0.395 5.395 7 C 0.118 3.882 8 C 0.065 3.935 9 C -0.143 4.143 10 C -0.191 4.191 11 C -0.104 4.104 12 C -0.175 4.175 13 C 0.109 3.891 14 C -0.465 4.465 15 H 0.080 0.920 16 C 0.077 3.923 17 N -0.787 5.787 18 Si 0.905 3.095 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.274 1.274 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.762 4.064 -2.063 6.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.104 4.104 5 N -0.099 5.099 6 N -0.184 5.184 7 C -0.025 4.025 8 C -0.049 4.049 9 C -0.150 4.150 10 C -0.213 4.213 11 C -0.124 4.124 12 C -0.198 4.198 13 C 0.105 3.895 14 C -0.495 4.495 15 H 0.098 0.902 16 C -0.142 4.142 17 N -0.412 5.412 18 Si 0.729 3.271 19 H -0.184 1.184 20 H -0.196 1.196 21 H -0.200 1.200 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.139 0.861 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.107 4.818 -1.109 7.108 hybrid contribution 0.686 -1.083 0.414 1.348 sum -4.420 3.735 -0.694 5.828 Atomic orbital electron populations 1.21789 0.94655 1.01793 1.01437 1.19441 0.95262 0.95009 0.93043 1.21789 1.01211 0.95273 1.01425 1.21915 0.99820 0.95870 0.92831 1.76282 1.18336 1.15255 1.00013 1.47544 1.43360 1.22726 1.04741 1.21717 1.03489 1.01648 0.75599 1.19270 1.01606 0.94141 0.89907 1.18476 1.04779 0.98290 0.93496 1.19783 1.06531 0.99559 0.95455 1.20490 0.98874 0.96865 0.96133 1.20895 1.06864 1.01629 0.90405 1.16730 0.90647 0.87753 0.94419 1.19493 1.05082 1.31610 0.93339 0.90226 1.25831 0.94663 0.94735 0.98929 1.69835 1.03332 1.31663 1.36383 0.86317 0.79261 0.79799 0.81737 1.18435 1.19575 1.19970 0.92756 0.92775 0.92378 0.89911 0.92379 0.92702 0.92771 0.92660 0.88837 0.91299 0.89035 0.89043 0.86147 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.17 37.15 0.34 -1.64 16 2 C -0.01 -0.12 3.34 -91.78 -0.31 -0.42 16 3 C -0.14 -2.01 9.18 37.16 0.34 -1.67 16 4 C 0.07 1.45 5.76 -81.97 -0.47 0.98 16 5 N -0.28 -6.23 12.45 33.94 0.42 -5.81 16 6 N -0.40 -9.15 4.05 -65.10 -0.26 -9.42 16 7 C 0.12 2.23 10.17 59.85 0.61 2.83 16 8 C 0.07 1.67 6.83 -83.75 -0.57 1.10 16 9 C -0.14 -3.43 6.10 -106.99 -0.65 -4.09 16 10 C -0.19 -4.38 9.98 -38.86 -0.39 -4.77 16 11 C -0.10 -2.45 9.98 -39.72 -0.40 -2.85 16 12 C -0.18 -4.52 8.67 -38.78 -0.34 -4.86 16 13 C 0.11 2.90 5.56 -106.75 -0.59 2.30 16 14 C -0.47 -11.82 7.94 -37.92 -0.30 -12.12 16 15 H 0.08 1.90 5.73 -52.49 -0.30 1.60 16 16 C 0.08 1.86 5.13 -17.32 -0.09 1.77 16 17 N -0.79 -19.83 11.04 55.55 0.61 -19.21 16 18 Si 0.90 17.98 29.59 -169.99 -5.03 12.95 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 1.29 7.74 -51.92 -0.40 0.89 16 26 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.81 6.23 -51.93 -0.32 1.49 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.83 7.80 -52.49 -0.41 1.42 16 33 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 34 H 0.12 3.17 6.25 -52.49 -0.33 2.84 16 35 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 291.52 15.07 4.39 4.39 Total: -1.00 -28.65 291.52 -7.39 -36.03 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.70 Total: 4.49 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.82 Total: -23.43 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.77 Total: -34.44 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.65 -7.39 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260524638.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.049 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds