Wall clock time and date at job start Mon Mar 30 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47267 * 2 1 4 4 C 1.50700 * 109.47034 * 120.00178 * 2 1 3 5 5 N 1.30237 * 125.74965 * 300.02427 * 4 2 1 6 6 N 1.40009 * 109.63598 * 179.97438 * 5 4 2 7 7 C 1.46507 * 125.89266 * 180.02562 * 6 5 4 8 8 C 1.36385 * 108.21226 * 359.97438 * 6 5 4 9 9 C 1.40417 * 106.80944 * 359.76102 * 8 6 5 10 10 C 1.40337 * 119.74349 * 179.70877 * 9 8 6 11 11 C 1.38052 * 120.27028 * 0.47411 * 10 9 8 12 12 C 1.38036 * 120.84975 * 359.77061 * 11 10 9 13 13 C 1.40557 * 120.29013 * 0.02562 * 12 11 10 14 14 C 1.40891 * 120.32912 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00537 * 206.13075 * 14 13 12 16 16 C 1.39982 * 119.99593 * 26.12504 * 14 13 12 17 17 N 1.30835 * 120.00093 * 17.50447 * 16 14 13 18 18 Si 1.86800 * 119.99944 * 197.50256 * 16 14 13 19 19 H 1.48505 * 109.47201 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47226 * 120.00084 * 18 16 14 21 21 H 1.48493 * 109.47418 * 240.00205 * 18 16 14 22 22 H 1.08999 * 109.47476 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47022 * 60.00168 * 1 2 3 24 24 H 1.09002 * 109.47640 * 300.00116 * 1 2 3 25 25 H 1.09008 * 109.47343 * 240.00228 * 2 1 3 26 26 H 1.09008 * 109.46753 * 59.99866 * 3 2 1 27 27 H 1.09000 * 109.47315 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47109 * 299.99935 * 3 2 1 29 29 H 1.09004 * 109.47260 * 95.82139 * 7 6 5 30 30 H 1.09002 * 109.46828 * 215.81503 * 7 6 5 31 31 H 1.08995 * 109.47059 * 335.81988 * 7 6 5 32 32 H 1.07997 * 119.86586 * 180.19780 * 10 9 8 33 33 H 1.08004 * 119.57551 * 179.74837 * 11 10 9 34 34 H 1.08002 * 119.85908 * 179.97438 * 12 11 10 35 35 H 0.97004 * 119.99905 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2304 5 7 1.7872 -0.3648 2.4620 6 7 2.4184 -1.2582 3.3359 7 6 2.3772 -1.2019 4.7993 8 6 3.0772 -2.1906 2.5897 9 6 2.8445 -1.8708 1.2424 10 6 3.4101 -2.6626 0.2312 11 6 4.1846 -3.7581 0.5564 12 6 4.4207 -4.0918 1.8749 13 6 3.8723 -3.3168 2.9114 14 6 4.1123 -3.6569 4.2574 15 1 3.4048 -3.3701 5.0213 16 6 5.2679 -4.3666 4.6046 17 7 6.2773 -4.4197 3.7740 18 14 5.3686 -5.2379 6.2539 19 1 4.1041 -5.0266 7.0034 20 1 5.5760 -6.6919 6.0338 21 1 6.5055 -4.6885 7.0354 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.6766 1.9563 0.8901 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.5925 -1.8634 5.1664 30 1 3.3387 -1.5203 5.2023 31 1 2.1699 -0.1804 5.1179 32 1 3.2350 -2.4166 -0.8057 33 1 4.6110 -4.3622 -0.2308 34 1 5.0287 -4.9525 2.1112 35 1 7.0782 -4.9112 4.0147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260524638.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:24 Heat of formation + Delta-G solvation = 49.853576 kcal Electronic energy + Delta-G solvation = -17453.748601 eV Core-core repulsion = 14837.542024 eV Total energy + Delta-G solvation = -2616.206577 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.00513 -37.87359 -36.56255 -35.41711 -33.15455 -31.13349 -30.15872 -28.03896 -27.94052 -26.24128 -23.75945 -22.78761 -22.28807 -19.97582 -18.95082 -17.46041 -17.24148 -16.50559 -16.20715 -15.67949 -15.27477 -15.12496 -14.60443 -14.45626 -14.26204 -13.56071 -13.46526 -13.33722 -13.01664 -12.86529 -12.82862 -12.39674 -12.26125 -12.11477 -11.92621 -11.84548 -11.71525 -11.36982 -11.15645 -11.07224 -10.31149 -9.11023 -8.75301 -8.51569 -6.20191 0.47558 1.12463 1.37724 1.41710 1.52544 1.82642 1.91803 2.19376 2.77420 3.64120 3.69136 3.91307 4.20268 4.22752 4.35249 4.47314 4.58982 4.62725 4.67102 4.81119 4.82125 4.87193 5.02409 5.03328 5.11711 5.14776 5.19484 5.41858 5.43462 5.48970 5.54364 5.85753 6.04001 6.19842 6.27760 6.43553 6.66271 6.82672 6.91179 7.11916 8.33720 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033055 B = 0.007188 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.877416 B = 3894.185220 C = 4479.286293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.011 4.011 3 C -0.133 4.133 4 C 0.074 3.926 5 N -0.288 5.288 6 N -0.408 5.408 7 C 0.114 3.886 8 C 0.037 3.963 9 C -0.169 4.169 10 C -0.185 4.185 11 C -0.115 4.115 12 C -0.198 4.198 13 C 0.080 3.920 14 C -0.491 4.491 15 H 0.085 0.915 16 C 0.037 3.963 17 N -0.821 5.821 18 Si 0.978 3.022 19 H -0.255 1.255 20 H -0.266 1.266 21 H -0.267 1.267 22 H 0.044 0.956 23 H 0.089 0.911 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 4.904 -2.596 7.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.031 4.031 3 C -0.191 4.191 4 C -0.099 4.099 5 N -0.104 5.104 6 N -0.197 5.197 7 C -0.027 4.027 8 C -0.078 4.078 9 C -0.177 4.177 10 C -0.207 4.207 11 C -0.134 4.134 12 C -0.221 4.221 13 C 0.075 3.925 14 C -0.521 4.521 15 H 0.103 0.897 16 C -0.178 4.178 17 N -0.447 5.447 18 Si 0.799 3.201 19 H -0.179 1.179 20 H -0.191 1.191 21 H -0.192 1.192 22 H 0.063 0.937 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.046 5.673 -1.635 8.450 hybrid contribution 0.946 -1.275 0.484 1.660 sum -5.100 4.398 -1.150 6.832 Atomic orbital electron populations 1.21746 0.92827 1.01613 1.02818 1.19711 0.96733 0.95721 0.90950 1.21751 1.00396 0.94098 1.02836 1.22676 0.98262 0.94869 0.94099 1.76260 1.18564 1.15202 1.00410 1.47890 1.43338 1.22447 1.05983 1.21875 1.03393 1.03550 0.73903 1.19534 1.02229 0.94630 0.91376 1.18987 1.05644 0.99616 0.93409 1.20158 1.05071 0.98576 0.96878 1.20764 0.99155 0.97609 0.95908 1.20928 1.07757 1.01761 0.91678 1.17074 0.91584 0.88586 0.95244 1.19752 1.05959 1.32996 0.93358 0.89718 1.26681 0.93783 0.94735 1.02639 1.69893 1.04012 1.32348 1.38458 0.85214 0.79456 0.78418 0.77025 1.17875 1.19105 1.19181 0.93728 0.89201 0.93192 0.88781 0.93183 0.93937 0.89151 0.91517 0.89838 0.88693 0.85825 0.86503 0.87639 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.17 71.98 0.66 -2.72 16 2 C -0.01 -0.32 3.34 -11.54 -0.04 -0.36 16 3 C -0.13 -3.46 9.18 71.98 0.66 -2.80 16 4 C 0.07 3.09 5.76 43.64 0.25 3.34 16 5 N -0.29 -12.55 12.45 -46.55 -0.58 -13.13 16 6 N -0.41 -19.01 4.05 -359.87 -1.46 -20.46 16 7 C 0.11 4.30 10.17 127.77 1.30 5.60 16 8 C 0.04 1.94 6.83 39.79 0.27 2.21 16 9 C -0.17 -8.08 6.10 -21.40 -0.13 -8.21 16 10 C -0.19 -8.32 9.98 22.74 0.23 -8.09 16 11 C -0.12 -5.43 9.98 22.18 0.22 -5.20 16 12 C -0.20 -10.58 8.67 22.79 0.20 -10.38 16 13 C 0.08 4.37 5.56 -21.24 -0.12 4.25 16 14 C -0.49 -25.65 7.94 23.34 0.19 -25.47 16 15 H 0.08 4.16 5.73 -2.91 -0.02 4.14 16 16 C 0.04 1.81 5.13 85.26 0.44 2.25 16 17 N -0.82 -42.46 11.04 21.84 0.24 -42.22 16 18 Si 0.98 37.11 29.59 68.60 2.03 39.15 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 20 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 22 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 23 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.09 2.63 7.74 -2.38 -0.02 2.61 16 26 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.08 3.30 6.23 -2.39 -0.01 3.29 16 31 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.12 4.64 7.80 -2.91 -0.02 4.61 16 33 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.11 5.81 6.25 -2.91 -0.02 5.79 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 Total: -1.00 -62.98 291.52 5.44 -57.54 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 1.08 Total: 24.71 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 4.12 Total: -45.58 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.80 Total: -75.81 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.15 kcal Total: -62.98 5.44 -57.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260524638.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.391 kcal (2) G-P(sol) polarization free energy of solvation -62.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds