Wall clock time and date at job start Mon Mar 30 2020 07:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86794 * 120.00132 * 2 1 4 4 H 1.48497 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47053 * 299.99843 * 3 2 1 6 6 H 1.48494 * 109.47117 * 59.99905 * 3 2 1 7 7 C 1.39945 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99998 * 197.87784 * 7 2 1 9 9 C 1.41404 * 120.00066 * 17.87843 * 7 2 1 10 10 C 1.40733 * 120.24012 * 24.36542 * 9 7 2 11 11 C 1.37605 * 119.74201 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.24433 * 359.72891 * 11 10 9 13 13 C 1.38606 * 120.50114 * 0.54608 * 12 11 10 14 14 C 1.50700 * 119.87401 * 179.71879 * 13 12 11 15 15 C 1.53000 * 109.47377 * 269.73229 * 14 13 12 16 16 C 1.53003 * 109.46965 * 174.99806 * 15 14 13 17 17 C 1.53004 * 109.47269 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.46795 * 300.00505 * 17 16 15 19 19 C 1.52994 * 109.47779 * 59.99678 * 18 17 16 20 20 C 1.52994 * 109.46973 * 294.99779 * 15 14 13 21 21 C 1.37642 * 120.25040 * 359.45534 * 13 12 11 22 22 H 0.97002 * 119.99465 * 0.02562 * 1 2 3 23 23 H 1.07996 * 120.13200 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87634 * 180.02562 * 11 10 9 25 25 H 1.08001 * 119.74260 * 180.29454 * 12 11 10 26 26 H 1.09006 * 109.47059 * 149.72912 * 14 13 12 27 27 H 1.09005 * 109.46860 * 29.73665 * 14 13 12 28 28 H 1.08992 * 109.47072 * 55.00491 * 15 14 13 29 29 H 1.09005 * 109.46930 * 60.00244 * 16 15 14 30 30 H 1.08998 * 109.47281 * 300.00183 * 16 15 14 31 31 H 1.08992 * 109.46875 * 180.02562 * 17 16 15 32 32 H 1.08998 * 109.46448 * 60.00392 * 17 16 15 33 33 H 1.09010 * 109.46872 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47531 * 299.99224 * 18 17 16 35 35 H 1.09005 * 109.46824 * 59.99564 * 19 18 17 36 36 H 1.08998 * 109.47435 * 179.97438 * 19 18 17 37 37 H 1.08998 * 109.47745 * 299.99810 * 20 15 14 38 38 H 1.09001 * 109.47148 * 60.00666 * 20 15 14 39 39 H 1.08004 * 120.12771 * 180.25108 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2877 9 6 1.3521 -2.4072 -0.3749 10 6 0.2208 -2.3624 -1.2107 11 6 -0.4098 -3.5317 -1.5692 12 6 0.0689 -4.7511 -1.1147 13 6 1.1789 -4.8066 -0.2865 14 6 1.6833 -6.1392 0.2044 15 6 1.0018 -6.4858 1.5296 16 6 1.4188 -7.8921 1.9650 17 6 0.7378 -8.2386 3.2906 18 6 1.1584 -7.2279 4.3594 19 6 0.7414 -5.8217 3.9241 20 6 1.4219 -5.4753 2.5987 21 6 1.8255 -3.6497 0.0849 22 1 -0.4849 0.8401 -0.0004 23 1 -0.1510 -1.4140 -1.5694 24 1 -1.2780 -3.4998 -2.2109 25 1 -0.4295 -5.6642 -1.4049 26 1 2.7619 -6.0870 0.3532 27 1 1.4552 -6.9083 -0.5337 28 1 -0.0801 -6.4511 1.4018 29 1 2.5008 -7.9269 2.0928 30 1 1.1196 -8.6120 1.2033 31 1 1.0353 -9.2401 3.6009 32 1 -0.3441 -8.2036 3.1631 33 1 0.6729 -7.4745 5.3037 34 1 2.2403 -7.2629 4.4869 35 1 -0.3406 -5.7868 3.7966 36 1 1.0407 -5.1018 4.6858 37 1 2.5038 -5.5102 2.7266 38 1 1.1247 -4.4735 2.2886 39 1 2.6927 -3.6956 0.7271 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260537573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:39 Heat of formation + Delta-G solvation = -39.347702 kcal Electronic energy + Delta-G solvation = -17433.095046 eV Core-core repulsion = 14916.560755 eV Total energy + Delta-G solvation = -2516.534291 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.152 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17558 -38.82003 -35.79451 -33.99572 -31.78708 -31.53649 -30.58549 -27.30190 -26.53229 -23.46650 -22.66545 -22.49511 -21.34682 -20.48183 -18.73378 -17.19926 -16.49599 -16.27659 -15.73466 -15.48884 -14.94880 -14.92136 -14.74173 -14.26526 -13.96647 -13.66765 -13.24437 -13.01642 -12.92605 -12.84403 -12.70219 -12.47788 -12.17578 -12.08848 -11.94341 -11.72427 -11.45566 -11.27389 -11.25106 -11.01395 -10.85322 -10.70867 -9.33882 -9.03754 -8.62448 -6.33057 1.00002 1.14632 1.36464 1.50374 1.52558 2.20496 2.74121 3.68919 3.85635 3.91952 4.00022 4.25530 4.30123 4.48157 4.54481 4.64068 4.65587 4.70704 4.72328 4.75204 4.86790 4.91593 5.05613 5.08771 5.15626 5.16327 5.23744 5.30649 5.35167 5.37121 5.39296 5.46652 5.55601 5.63248 5.68888 5.77288 6.07576 6.15252 6.25239 6.43640 6.73795 6.96944 7.08469 8.34962 Molecular weight = 244.15amu Principal moments of inertia in cm(-1) A = 0.028160 B = 0.005802 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.095836 B = 4824.742693 C = 5381.245585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.077 3.923 10 C -0.197 4.197 11 C -0.112 4.112 12 C -0.238 4.238 13 C -0.055 4.055 14 C -0.064 4.064 15 C -0.071 4.071 16 C -0.108 4.108 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.115 4.115 21 C -0.225 4.225 22 H 0.286 0.714 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -11.151 5.244 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.075 3.925 10 C -0.217 4.217 11 C -0.130 4.130 12 C -0.257 4.257 13 C -0.055 4.055 14 C -0.102 4.102 15 C -0.089 4.089 16 C -0.146 4.146 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.245 4.245 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.131 0.869 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.505 -11.006 5.264 12.293 hybrid contribution 0.039 1.324 -0.168 1.335 sum 1.543 -9.682 5.096 11.049 Atomic orbital electron populations 1.69907 1.09038 1.30278 1.36339 1.26743 0.95448 1.04474 0.91250 0.85197 0.79437 0.76337 0.78949 1.18206 1.18879 1.19010 1.19810 0.98196 0.92661 1.42566 0.91021 1.17988 0.91935 0.93275 0.89332 1.21260 1.00591 0.96951 1.02861 1.20955 0.98921 0.93286 0.99875 1.20604 1.01284 0.96434 1.07379 1.19685 0.95012 0.94798 0.96000 1.20592 0.99521 0.93083 0.96976 1.21001 0.99199 0.95462 0.93254 1.21574 1.00712 0.94764 0.97534 1.21527 1.00240 0.99059 0.94549 1.21518 1.01308 0.93725 0.98572 1.21521 0.99857 0.97814 0.96450 1.21573 0.99927 0.98493 0.95241 1.20929 1.04058 0.92511 1.06955 0.90322 0.88531 0.87617 0.86905 0.91769 0.90591 0.92793 0.91609 0.91108 0.90339 0.92426 0.91079 0.91750 0.93009 0.92481 0.92443 0.94424 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.13 10.95 21.83 0.24 -44.89 16 2 C 0.03 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 39.56 29.59 68.60 2.03 41.59 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.21 9.05 23.46 0.21 -28.00 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 9 C 0.08 4.31 5.58 -21.29 -0.12 4.19 16 10 C -0.20 -10.88 8.70 22.73 0.20 -10.68 16 11 C -0.11 -5.44 10.02 22.22 0.22 -5.22 16 12 C -0.24 -10.55 9.70 22.46 0.22 -10.33 16 13 C -0.05 -2.39 4.71 -19.92 -0.09 -2.49 16 14 C -0.06 -2.15 4.84 29.85 0.14 -2.01 16 15 C -0.07 -2.12 2.18 -10.79 -0.02 -2.14 16 16 C -0.11 -2.44 5.20 30.60 0.16 -2.28 16 17 C -0.12 -2.31 5.92 30.59 0.18 -2.13 16 18 C -0.11 -2.40 5.92 30.59 0.18 -2.22 16 19 C -0.12 -3.24 5.92 30.58 0.18 -3.06 16 20 C -0.11 -3.74 4.76 30.58 0.15 -3.60 16 21 C -0.23 -11.26 7.69 22.73 0.17 -11.09 16 22 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 23 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 24 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 25 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 26 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 27 H 0.08 2.25 8.08 -2.38 -0.02 2.23 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.54 6.26 -2.39 -0.01 1.52 16 39 H 0.09 4.38 8.03 -2.91 -0.02 4.36 16 Total: -1.00 -60.17 307.56 5.48 -54.69 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.99 Total: 27.39 kcal Atomic # 6 Polarization: -81.00 SS G_CDS: 2.22 Total: -78.78 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.24 Total: -44.89 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.17 5.48 -54.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.341 kcal (2) G-P(sol) polarization free energy of solvation -60.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds