Wall clock time and date at job start Mon Mar 30 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47219 * 2 1 4 4 C 1.53006 * 109.47145 * 239.99780 * 2 1 3 5 5 C 1.50700 * 109.46710 * 119.99874 * 2 1 3 6 6 N 1.34596 * 126.02236 * 6.61608 * 5 2 1 7 7 H 0.96994 * 125.10889 * 359.97438 * 6 5 2 8 8 N 1.39989 * 109.77160 * 179.97438 * 6 5 2 9 9 C 1.32227 * 108.81575 * 359.97438 * 8 6 5 10 10 C 1.40983 * 134.53093 * 180.02562 * 9 8 6 11 11 C 1.37484 * 120.72171 * 179.97438 * 10 9 8 12 12 C 1.38132 * 122.59644 * 0.02562 * 11 10 9 13 13 C 1.40486 * 121.11166 * 359.97438 * 12 11 10 14 14 C 1.40129 * 120.76882 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00056 * 166.04719 * 14 13 12 16 16 C 1.40074 * 120.00182 * 346.04293 * 14 13 12 17 17 N 1.30781 * 119.99823 * 330.52050 * 16 14 13 18 18 Si 1.86801 * 119.99793 * 150.51976 * 16 14 13 19 19 H 1.48494 * 109.47115 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46821 * 120.00541 * 18 16 14 21 21 H 1.48503 * 109.46911 * 240.00010 * 18 16 14 22 22 C 1.37153 * 126.01548 * 186.58467 * 5 2 1 23 23 H 1.08997 * 109.47006 * 300.00011 * 1 2 3 24 24 H 1.08996 * 109.46472 * 60.00508 * 1 2 3 25 25 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47330 * 158.64254 * 3 2 1 27 27 H 1.08999 * 109.47303 * 278.64009 * 3 2 1 28 28 H 1.08997 * 109.47132 * 38.64197 * 3 2 1 29 29 H 1.08997 * 109.46954 * 322.32817 * 4 2 1 30 30 H 1.08997 * 109.46819 * 82.32986 * 4 2 1 31 31 H 1.09008 * 109.46658 * 202.33230 * 4 2 1 32 32 H 1.08004 * 119.64073 * 359.97438 * 10 9 8 33 33 H 1.08000 * 118.70526 * 180.02562 * 11 10 9 34 34 H 1.08004 * 119.44456 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99986 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.2765 -1.3723 2.1262 7 1 0.3124 -1.4677 2.0806 8 7 2.0914 -1.9024 3.1335 9 6 3.3484 -1.5807 2.8788 10 6 4.5808 -1.8259 3.5180 11 6 5.7545 -1.3428 2.9895 12 6 5.7967 -0.6025 1.8241 13 6 4.6237 -0.3033 1.1113 14 6 4.6748 0.4488 -0.0700 15 1 3.8171 0.4839 -0.7253 16 6 5.8383 1.1551 -0.4008 17 7 6.6208 1.6059 0.5451 18 14 6.2722 1.4530 -2.1932 19 1 5.2318 0.8462 -3.0617 20 1 6.3402 2.9141 -2.4497 21 1 7.5893 0.8360 -2.4927 22 6 3.3401 -0.7968 1.6345 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.0635 1.4660 0.3742 27 1 2.0156 1.8365 -1.0160 28 1 1.4044 2.0525 0.6417 29 1 1.3943 -1.5721 -1.4667 30 1 2.0318 -0.0335 -2.0947 31 1 3.0575 -1.0723 -1.0762 32 1 4.6032 -2.3994 4.4329 33 1 6.6800 -1.5503 3.5059 34 1 6.7476 -0.2484 1.4542 35 1 7.4267 2.0947 0.3160 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260549666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:58 Heat of formation + Delta-G solvation = 76.468244 kcal Electronic energy + Delta-G solvation = -18053.324000 eV Core-core repulsion = 15438.271522 eV Total energy + Delta-G solvation = -2615.052478 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14871 -36.30715 -35.85275 -33.45550 -30.25032 -29.68507 -27.52022 -26.85074 -26.65121 -25.16410 -22.54371 -20.78315 -20.06286 -18.37849 -17.02063 -16.09991 -15.38054 -15.26463 -14.34120 -14.10557 -13.63244 -13.26079 -13.18408 -12.72894 -12.49397 -12.14288 -11.87515 -11.65157 -11.38379 -11.26395 -11.20326 -10.82810 -10.66916 -10.55008 -10.21657 -10.12735 -9.84261 -9.53449 -9.20224 -8.89735 -8.50737 -7.37937 -7.13707 -6.48933 -4.33325 2.07290 2.82148 2.92501 2.96618 3.49663 3.65953 3.70391 3.85641 4.52080 5.02843 5.18405 5.29334 5.66001 5.71493 5.79343 5.85031 5.96560 6.08955 6.25138 6.30776 6.41657 6.44791 6.60555 6.66002 6.75252 6.78776 6.93576 7.09971 7.18431 7.29964 7.55260 7.76918 8.02838 8.08752 8.29458 8.40028 8.53291 8.72584 8.82920 9.14891 9.73875 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.012011 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.269150 B = 2330.592030 C = 3513.001368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.005 3.995 3 C -0.172 4.172 4 C -0.147 4.147 5 C 0.115 3.885 6 N -0.476 5.476 7 H 0.421 0.579 8 N -0.378 5.378 9 C 0.159 3.841 10 C -0.310 4.310 11 C -0.001 4.001 12 C -0.304 4.304 13 C 0.173 3.827 14 C -0.430 4.430 15 H 0.114 0.886 16 C 0.078 3.922 17 N -0.731 5.731 18 Si 0.899 3.101 19 H -0.252 1.252 20 H -0.270 1.270 21 H -0.266 1.266 22 C -0.221 4.221 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.120 0.880 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 1.484 -6.340 8.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.002 3.998 3 C -0.229 4.229 4 C -0.204 4.204 5 C -0.018 4.018 6 N -0.177 5.177 7 H 0.263 0.737 8 N -0.206 5.206 9 C 0.007 3.993 10 C -0.334 4.334 11 C -0.023 4.023 12 C -0.325 4.325 13 C 0.167 3.833 14 C -0.456 4.456 15 H 0.131 0.869 16 C -0.149 4.149 17 N -0.351 5.351 18 Si 0.722 3.278 19 H -0.175 1.175 20 H -0.195 1.195 21 H -0.191 1.191 22 C -0.231 4.231 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.786 0.997 -5.409 7.983 hybrid contribution 0.229 0.515 -1.116 1.250 sum -5.557 1.512 -6.525 8.703 Atomic orbital electron populations 1.22031 0.95271 1.01300 1.02172 1.19100 0.93972 0.95851 0.90832 1.22613 1.06520 0.92397 1.01329 1.22129 1.03250 0.99579 0.95449 1.20688 0.91446 0.96919 0.92727 1.46039 1.08814 1.43243 1.19598 0.73748 1.77507 1.01489 1.29939 1.11711 1.20698 0.91747 0.93607 0.93229 1.18919 0.89166 1.19806 1.05509 1.20225 0.94919 0.92773 0.94422 1.20585 0.97573 1.13522 1.00814 1.17817 0.87935 0.87277 0.90231 1.20304 0.99510 1.21110 1.04711 0.86852 1.26193 0.95442 0.93392 0.99841 1.69926 1.10148 1.19663 1.35390 0.86367 0.80209 0.79059 0.82171 1.17535 1.19496 1.19077 1.20474 0.92082 1.10840 0.99735 0.92690 0.91750 0.93008 0.86162 0.92792 0.93943 0.93445 0.92247 0.89699 0.89643 0.89855 0.86772 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 7.36 37.16 0.27 -1.72 16 2 C 0.00 0.08 0.75 -155.66 -0.12 -0.04 16 3 C -0.17 -2.98 7.61 37.15 0.28 -2.70 16 4 C -0.15 -2.37 7.68 37.16 0.29 -2.08 16 5 C 0.12 2.42 5.61 -81.77 -0.46 1.96 16 6 N -0.48 -9.76 7.00 33.75 0.24 -9.53 16 7 H 0.42 6.94 7.86 -182.69 -1.44 5.50 16 8 N -0.38 -9.29 12.72 33.23 0.42 -8.87 16 9 C 0.16 4.16 7.48 -83.08 -0.62 3.53 16 10 C -0.31 -7.95 10.09 -38.82 -0.39 -8.34 16 11 C 0.00 -0.03 9.86 -39.90 -0.39 -0.43 16 12 C -0.30 -7.88 8.80 -38.77 -0.34 -8.22 16 13 C 0.17 4.37 5.58 -104.73 -0.58 3.79 16 14 C -0.43 -9.86 5.56 -38.18 -0.21 -10.08 16 15 H 0.11 2.36 2.88 -52.49 -0.15 2.21 16 16 C 0.08 1.70 4.97 -17.31 -0.09 1.62 16 17 N -0.73 -16.83 11.05 55.55 0.61 -16.22 16 18 Si 0.90 16.14 29.65 -169.99 -5.04 11.10 16 19 H -0.25 -4.41 7.11 56.52 0.40 -4.01 16 20 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 21 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 22 C -0.22 -5.48 5.64 -103.11 -0.58 -6.06 16 23 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.63 7.82 -51.93 -0.41 0.22 16 26 H 0.12 2.51 3.88 -51.93 -0.20 2.31 16 27 H 0.05 0.82 7.63 -51.93 -0.40 0.42 16 28 H 0.04 0.69 7.95 -51.93 -0.41 0.28 16 29 H 0.05 0.68 7.93 -51.93 -0.41 0.27 16 30 H 0.06 0.84 7.62 -51.93 -0.40 0.45 16 31 H 0.08 1.60 5.73 -51.92 -0.30 1.30 16 32 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.11 2.97 5.84 -52.48 -0.31 2.67 16 35 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 LS Contribution 274.54 15.07 4.14 4.14 Total: -1.00 -28.21 274.54 -7.81 -36.03 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.24 Total: 12.11 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -2.94 Total: -28.76 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 1.27 Total: -34.62 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.04 Total: 11.10 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.21 -7.81 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.494 kcal (2) G-P(sol) polarization free energy of solvation -28.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds