Wall clock time and date at job start Mon Mar 30 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47601 * 2 1 4 4 C 1.50703 * 109.47300 * 239.99341 * 2 1 3 5 5 N 1.33986 * 126.04071 * 65.97891 * 4 2 1 6 6 H 0.97000 * 125.02314 * 359.97438 * 5 4 2 7 7 N 1.39960 * 109.95370 * 179.83431 * 5 4 2 8 8 C 1.32058 * 108.95776 * 0.43957 * 7 5 4 9 9 C 1.41149 * 134.67837 * 179.72273 * 8 7 5 10 10 C 1.35642 * 119.59509 * 180.02562 * 9 8 7 11 11 C 1.39679 * 121.81749 * 0.02562 * 10 9 8 12 12 C 1.35659 * 121.72546 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.23277 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47131 * 102.19209 * 13 12 11 15 15 H 1.07997 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99565 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47608 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46906 * 120.00330 * 18 16 14 21 21 H 1.48500 * 109.47000 * 239.99940 * 18 16 14 22 22 C 1.38238 * 126.04995 * 246.29199 * 4 2 1 23 23 H 1.09000 * 109.47733 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46774 * 60.00101 * 1 2 3 25 25 H 1.09002 * 109.46996 * 300.00552 * 1 2 3 26 26 H 1.09006 * 109.46774 * 119.99899 * 2 1 3 27 27 H 1.09002 * 109.47396 * 59.99693 * 3 2 1 28 28 H 1.08999 * 109.47563 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46974 * 299.99777 * 3 2 1 30 30 H 1.08001 * 120.20478 * 0.04337 * 9 8 7 31 31 H 1.07999 * 119.08983 * 180.02562 * 10 9 8 32 32 H 1.07999 * 119.14040 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.46808 * 222.19063 * 13 12 11 34 34 H 1.08999 * 109.47237 * 342.19130 * 13 12 11 35 35 H 0.97008 * 120.00291 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 -1.2304 5 7 1.8794 -0.2988 -2.4962 6 1 1.4220 0.5129 -2.7662 7 7 2.4798 -1.2114 -3.3712 8 6 3.0018 -2.1999 -2.6682 9 6 3.7090 -3.3792 -2.9871 10 6 4.1155 -4.2064 -1.9920 11 6 3.8541 -3.9265 -0.6488 12 6 3.1799 -2.8117 -0.2705 13 6 2.9168 -2.5426 1.1887 14 6 3.8861 -1.5034 1.6907 15 1 4.6195 -1.0806 1.0201 16 6 3.8364 -1.0927 3.0059 17 7 2.9436 -1.6080 3.8225 18 14 5.0383 0.1948 3.6282 19 1 5.9346 0.6119 2.5202 20 1 4.2861 1.3743 4.1265 21 1 5.8492 -0.3779 4.7326 22 6 2.7272 -1.9054 -1.2531 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8901 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 3.9252 -3.6212 -4.0172 31 1 4.6564 -5.1062 -2.2453 32 1 4.1976 -4.6155 0.1086 33 1 1.8970 -2.1782 1.3129 34 1 3.0452 -3.4638 1.7570 35 1 2.9089 -1.3193 4.7480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260558713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:11 Heat of formation + Delta-G solvation = 66.251757 kcal Electronic energy + Delta-G solvation = -17725.438032 eV Core-core repulsion = 15109.942533 eV Total energy + Delta-G solvation = -2615.495498 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -40.86296 -36.83725 -35.32218 -33.21368 -31.45199 -30.19241 -28.34545 -26.91146 -26.84520 -23.92375 -22.80953 -21.41833 -20.57616 -18.34654 -17.02820 -16.34544 -16.02087 -15.05670 -14.50418 -14.45366 -14.29562 -13.70277 -13.22123 -12.72959 -12.62188 -12.37567 -11.99030 -11.73754 -11.41028 -11.24116 -11.12450 -10.93096 -10.85539 -10.75522 -10.55128 -10.15104 -9.95297 -9.64711 -9.20469 -9.04794 -8.49396 -8.08879 -6.80231 -6.10293 -4.14534 1.29423 2.51450 3.07740 3.17778 3.23362 3.32949 3.38123 4.35264 4.61457 4.86625 4.98989 5.21602 5.24940 5.48057 5.57810 5.74920 5.80007 5.82759 5.90541 6.05912 6.11069 6.24490 6.30329 6.39259 6.42423 6.57802 6.78814 6.90295 7.13613 7.20341 7.28303 7.45348 7.62003 7.67315 7.84248 7.87252 8.18366 8.26687 8.91407 9.49017 10.97780 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.009848 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.050777 B = 2842.602226 C = 3639.667425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.140 4.140 4 C 0.151 3.849 5 N -0.439 5.439 6 H 0.433 0.567 7 N -0.337 5.337 8 C 0.112 3.888 9 C -0.155 4.155 10 C -0.050 4.050 11 C -0.204 4.204 12 C 0.054 3.946 13 C 0.040 3.960 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.196 4.196 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.152 0.848 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.253 2.171 -7.416 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.198 4.198 4 C 0.013 3.987 5 N -0.138 5.138 6 H 0.276 0.724 7 N -0.165 5.165 8 C -0.042 4.042 9 C -0.176 4.176 10 C -0.073 4.073 11 C -0.223 4.223 12 C 0.051 3.949 13 C 0.004 3.996 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.714 3.286 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.206 4.206 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.170 0.830 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.492 2.645 -8.485 9.549 hybrid contribution 0.613 0.859 0.970 1.434 sum -2.879 3.504 -7.514 8.777 Atomic orbital electron populations 1.21832 0.94510 1.02218 1.01382 1.20548 0.95249 0.96360 0.96015 1.21776 1.02183 0.94758 1.01052 1.21318 0.96374 0.94339 0.86701 1.46117 1.42720 1.20915 1.04057 0.72438 1.77522 1.22322 1.03450 1.13168 1.20929 0.96898 0.94471 0.91863 1.19546 1.05340 0.93867 0.98884 1.20596 0.96203 0.97551 0.92927 1.20319 1.06678 1.00142 0.95198 1.19886 0.89002 0.89584 0.96410 1.18526 0.97674 0.98050 0.85392 1.21000 1.16629 1.21731 0.94980 0.92388 1.24949 0.95609 0.96624 0.96731 1.69956 1.34597 1.42893 1.05430 0.86605 0.81407 0.81532 0.79047 1.19617 1.20893 1.20899 1.19274 1.09715 0.97796 0.93768 0.92213 0.93847 0.91496 0.83037 0.91577 0.91806 0.94153 0.86714 0.86735 0.86599 0.94700 0.94965 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.18 37.16 0.34 -1.69 16 2 C -0.06 -1.07 3.10 -91.78 -0.28 -1.35 16 3 C -0.14 -2.12 9.15 37.15 0.34 -1.78 16 4 C 0.15 2.80 5.80 -81.65 -0.47 2.33 16 5 N -0.44 -7.33 7.16 33.85 0.24 -7.09 16 6 H 0.43 5.55 8.89 -182.70 -1.62 3.93 16 7 N -0.34 -6.51 12.70 33.25 0.42 -6.09 16 8 C 0.11 2.27 7.49 -83.06 -0.62 1.65 16 9 C -0.15 -2.81 10.08 -39.41 -0.40 -3.21 16 10 C -0.05 -0.87 9.89 -39.97 -0.40 -1.27 16 11 C -0.20 -4.06 9.53 -39.97 -0.38 -4.44 16 12 C 0.05 1.18 5.09 -104.45 -0.53 0.65 16 13 C 0.04 0.97 4.44 -29.03 -0.13 0.84 16 14 C -0.51 -13.07 7.66 -34.44 -0.26 -13.34 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 18 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.20 -4.15 6.12 -105.19 -0.64 -4.79 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.15 3.19 3.67 -51.93 -0.19 3.00 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 2.19 7.97 -52.49 -0.42 1.77 16 33 H 0.04 0.87 6.35 -51.93 -0.33 0.54 16 34 H 0.03 0.83 7.94 -51.93 -0.41 0.41 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -29.12 292.76 -8.64 -37.76 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.89 Total: 4.09 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.54 Total: -24.86 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 1.40 Total: -36.78 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.12 -8.64 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.010 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds