Wall clock time and date at job start Mon Mar 30 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47601 * 2 1 4 4 C 1.50703 * 109.47300 * 239.99341 * 2 1 3 5 5 N 1.33986 * 126.04071 * 65.97891 * 4 2 1 6 6 H 0.97000 * 125.02314 * 359.97438 * 5 4 2 7 7 N 1.39960 * 109.95370 * 179.83431 * 5 4 2 8 8 C 1.32058 * 108.95776 * 0.43957 * 7 5 4 9 9 C 1.41149 * 134.67837 * 179.72273 * 8 7 5 10 10 C 1.35642 * 119.59509 * 180.02562 * 9 8 7 11 11 C 1.39679 * 121.81749 * 0.02562 * 10 9 8 12 12 C 1.35659 * 121.72546 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.23277 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47131 * 102.19209 * 13 12 11 15 15 H 1.07997 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99717 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00051 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99565 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47608 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46906 * 120.00330 * 18 16 14 21 21 H 1.48500 * 109.47000 * 239.99940 * 18 16 14 22 22 C 1.38238 * 126.04995 * 246.29199 * 4 2 1 23 23 H 1.09000 * 109.47733 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46774 * 60.00101 * 1 2 3 25 25 H 1.09002 * 109.46996 * 300.00552 * 1 2 3 26 26 H 1.09006 * 109.46774 * 119.99899 * 2 1 3 27 27 H 1.09002 * 109.47396 * 59.99693 * 3 2 1 28 28 H 1.08999 * 109.47563 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46974 * 299.99777 * 3 2 1 30 30 H 1.08001 * 120.20478 * 0.04337 * 9 8 7 31 31 H 1.07999 * 119.08983 * 180.02562 * 10 9 8 32 32 H 1.07999 * 119.14040 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.46808 * 222.19063 * 13 12 11 34 34 H 1.08999 * 109.47237 * 342.19130 * 13 12 11 35 35 H 0.97008 * 120.00291 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7106 -1.2304 5 7 1.8794 -0.2988 -2.4962 6 1 1.4220 0.5129 -2.7662 7 7 2.4798 -1.2114 -3.3712 8 6 3.0018 -2.1999 -2.6682 9 6 3.7090 -3.3792 -2.9871 10 6 4.1155 -4.2064 -1.9920 11 6 3.8541 -3.9265 -0.6488 12 6 3.1799 -2.8117 -0.2705 13 6 2.9168 -2.5426 1.1887 14 6 3.8861 -1.5034 1.6907 15 1 4.6195 -1.0806 1.0201 16 6 3.8364 -1.0927 3.0059 17 7 2.9436 -1.6080 3.8225 18 14 5.0383 0.1948 3.6282 19 1 5.9346 0.6119 2.5202 20 1 4.2861 1.3743 4.1265 21 1 5.8492 -0.3779 4.7326 22 6 2.7272 -1.9054 -1.2531 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 0.8901 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 3.9252 -3.6212 -4.0172 31 1 4.6564 -5.1062 -2.2453 32 1 4.1976 -4.6155 0.1086 33 1 1.8970 -2.1782 1.3129 34 1 3.0452 -3.4638 1.7570 35 1 2.9089 -1.3193 4.7480 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260558713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:07 Heat of formation + Delta-G solvation = 50.125713 kcal Electronic energy + Delta-G solvation = -17726.137309 eV Core-core repulsion = 15109.942533 eV Total energy + Delta-G solvation = -2616.194776 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -42.32306 -38.33361 -36.76616 -35.02496 -33.12926 -31.65990 -29.93441 -28.59554 -28.05713 -25.58095 -24.47716 -22.87728 -22.06194 -19.86806 -18.45582 -18.38231 -17.46791 -16.65250 -16.20885 -15.90627 -15.74040 -15.13208 -14.59513 -14.38202 -14.18354 -13.95408 -13.41438 -13.12200 -13.05776 -12.75659 -12.71511 -12.48406 -12.46883 -12.14207 -12.08376 -11.83692 -11.53190 -11.44658 -10.83009 -10.70275 -10.52739 -9.56167 -8.37527 -8.08143 -6.23209 -0.17594 1.00283 1.39322 1.43173 1.52829 1.58726 1.83931 2.43574 3.06790 3.18097 3.47006 3.58089 3.94837 4.17150 4.22252 4.35683 4.51773 4.56696 4.64074 4.71009 4.80195 4.89550 4.92266 4.95653 5.19885 5.27322 5.30207 5.36122 5.50893 5.61180 5.63150 5.74004 5.83359 6.09703 6.15832 6.27750 6.33120 6.72260 6.86097 7.43305 8.95396 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.009848 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.050777 B = 2842.602226 C = 3639.667425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.062 4.062 3 C -0.137 4.137 4 C 0.154 3.846 5 N -0.419 5.419 6 H 0.451 0.549 7 N -0.344 5.344 8 C 0.092 3.908 9 C -0.152 4.152 10 C -0.049 4.049 11 C -0.206 4.206 12 C 0.020 3.980 13 C 0.055 3.945 14 C -0.505 4.505 15 H 0.044 0.956 16 C 0.022 3.978 17 N -0.920 5.920 18 Si 0.944 3.056 19 H -0.272 1.272 20 H -0.272 1.272 21 H -0.282 1.282 22 C -0.229 4.229 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.118 0.882 33 H 0.021 0.979 34 H 0.005 0.995 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 3.140 -8.881 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.082 4.082 3 C -0.194 4.194 4 C 0.015 3.985 5 N -0.120 5.120 6 H 0.298 0.702 7 N -0.173 5.173 8 C -0.061 4.061 9 C -0.173 4.173 10 C -0.071 4.071 11 C -0.225 4.225 12 C 0.018 3.982 13 C 0.018 3.982 14 C -0.543 4.543 15 H 0.062 0.938 16 C -0.177 4.177 17 N -0.560 5.560 18 Si 0.769 3.231 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.208 1.208 22 C -0.239 4.239 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.136 0.864 33 H 0.039 0.961 34 H 0.023 0.977 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.402 3.631 -9.969 11.142 hybrid contribution 0.562 0.533 1.376 1.579 sum -2.840 4.163 -8.593 9.962 Atomic orbital electron populations 1.21797 0.92203 1.01983 1.03377 1.20455 0.97139 0.96959 0.93688 1.21767 1.00770 0.93667 1.03245 1.21440 0.95692 0.93810 0.87602 1.46033 1.41860 1.21054 1.03079 0.70246 1.77442 1.22565 1.03625 1.13657 1.21345 0.97714 0.95559 0.91448 1.19992 1.03965 0.92853 1.00519 1.20908 0.96004 0.98879 0.91272 1.20569 1.05683 0.99341 0.96931 1.19763 0.91696 0.91542 0.95221 1.18240 0.96653 0.96153 0.87129 1.21043 1.16363 1.21956 0.94951 0.93784 1.25587 0.96981 0.98283 0.96839 1.70050 1.36000 1.44195 1.05745 0.85716 0.79479 0.79611 0.78268 1.19649 1.19725 1.20782 1.19514 1.11155 0.98951 0.94233 0.93599 0.90824 0.90495 0.87138 0.90681 0.93990 0.90699 0.83818 0.82585 0.86410 0.96073 0.97656 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.18 71.98 0.66 -3.06 16 2 C -0.06 -2.13 3.10 -11.54 -0.04 -2.16 16 3 C -0.14 -3.95 9.15 71.98 0.66 -3.29 16 4 C 0.15 5.65 5.80 42.23 0.24 5.90 16 5 N -0.42 -13.23 7.16 -46.82 -0.34 -13.57 16 6 H 0.45 10.29 8.89 -213.41 -1.90 8.39 16 7 N -0.34 -12.73 12.70 -48.71 -0.62 -13.35 16 8 C 0.09 3.64 7.49 42.16 0.32 3.95 16 9 C -0.15 -5.19 10.08 22.38 0.23 -4.96 16 10 C -0.05 -1.59 9.89 22.02 0.22 -1.38 16 11 C -0.21 -8.22 9.53 22.02 0.21 -8.01 16 12 C 0.02 0.91 5.09 -19.75 -0.10 0.81 16 13 C 0.05 2.80 4.44 29.10 0.13 2.93 16 14 C -0.51 -27.02 7.66 25.60 0.20 -26.82 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 16 C 0.02 1.19 5.46 84.66 0.46 1.65 16 17 N -0.92 -51.52 13.29 21.45 0.28 -51.24 16 18 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.23 -9.75 6.12 -20.23 -0.12 -9.88 16 23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.11 4.82 3.67 -2.38 -0.01 4.81 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.60 8.07 -2.38 -0.02 1.59 16 30 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.12 4.52 7.97 -2.91 -0.02 4.49 16 33 H 0.02 1.12 6.35 -2.39 -0.02 1.10 16 34 H 0.01 0.28 7.94 -2.39 -0.02 0.26 16 35 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -63.82 292.76 3.62 -60.20 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.80 Total: 18.05 kcal Atomic # 6 Polarization: -47.38 SS G_CDS: 3.06 Total: -44.32 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -0.67 Total: -78.15 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -63.82 3.62 -60.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260558713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.329 kcal (2) G-P(sol) polarization free energy of solvation -63.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds