Wall clock time and date at job start Mon Mar 30 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 C 1.50699 * 109.47597 * 119.99992 * 2 1 3 5 5 N 1.30906 * 125.31225 * 307.88742 * 4 2 1 6 6 C 1.33407 * 109.86813 * 179.97438 * 5 4 2 7 7 C 1.37991 * 107.46033 * 359.97438 * 6 5 4 8 8 C 1.40973 * 133.71074 * 179.97438 * 7 6 5 9 9 C 1.35875 * 119.17913 * 180.02562 * 8 7 6 10 10 C 1.40812 * 119.77160 * 0.02562 * 9 8 7 11 11 C 1.34669 * 120.61946 * 0.02562 * 10 9 8 12 12 C 1.50694 * 119.72388 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46986 * 353.21610 * 12 11 10 14 14 H 1.07997 * 120.00177 * 356.84619 * 13 12 11 15 15 C 1.37877 * 119.99906 * 176.56581 * 13 12 11 16 16 N 1.31510 * 120.00267 * 0.27853 * 15 13 12 17 17 Si 1.86806 * 119.99892 * 180.27386 * 15 13 12 18 18 H 1.48502 * 109.47019 * 60.00568 * 17 15 13 19 19 H 1.48501 * 109.46972 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47330 * 300.00255 * 17 15 13 21 21 N 1.35036 * 125.31421 * 128.12884 * 4 2 1 22 22 H 1.08997 * 109.47565 * 299.99773 * 1 2 3 23 23 H 1.08999 * 109.47666 * 60.00132 * 1 2 3 24 24 H 1.09007 * 109.46971 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47112 * 240.00283 * 2 1 3 26 26 H 1.09000 * 109.47474 * 300.00091 * 3 2 1 27 27 H 1.09002 * 109.46946 * 60.00181 * 3 2 1 28 28 H 1.09005 * 109.47476 * 180.02562 * 3 2 1 29 29 H 1.08000 * 126.26669 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.40448 * 359.97438 * 8 7 6 31 31 H 1.08002 * 120.11350 * 179.97438 * 9 8 7 32 32 H 1.07997 * 119.69150 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.47529 * 233.21605 * 12 11 10 34 34 H 1.09001 * 109.47319 * 113.21545 * 12 11 10 35 35 H 0.97000 * 120.00481 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.6662 -0.4463 2.4592 6 6 2.3002 -1.2593 3.3058 7 6 3.1141 -2.0842 2.5567 8 6 4.0076 -3.1256 2.8798 9 6 4.6771 -3.7579 1.8807 10 6 4.4710 -3.3664 0.5439 11 6 3.6161 -2.3697 0.2451 12 6 3.4113 -1.9668 -1.1924 13 6 4.3899 -2.7083 -2.0663 14 1 5.1236 -3.3632 -1.6201 15 6 4.3448 -2.5552 -3.4357 16 7 3.4513 -1.7577 -3.9791 17 14 5.5529 -3.4803 -4.5194 18 1 5.3818 -4.9413 -4.3161 19 1 5.2969 -3.1459 -5.9434 20 1 6.9397 -3.0895 -4.1602 21 7 2.9340 -1.7156 1.2379 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.6765 1.9564 -0.8899 27 1 1.6765 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 2.1955 -1.2698 4.3807 30 1 4.1587 -3.4166 3.9088 31 1 5.3656 -4.5575 2.1112 32 1 5.0034 -3.8702 -0.2492 33 1 3.5727 -0.8938 -1.2956 34 1 2.3939 -2.2120 -1.4971 35 1 3.4193 -1.6502 -4.9426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260566588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:27 Heat of formation + Delta-G solvation = 57.606343 kcal Electronic energy + Delta-G solvation = -17588.973384 eV Core-core repulsion = 14973.102992 eV Total energy + Delta-G solvation = -2615.870391 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.75720 -38.69106 -36.76560 -35.16786 -34.13646 -32.33701 -29.90536 -28.09097 -28.02039 -26.10050 -24.05446 -23.49245 -22.68427 -20.65898 -18.74590 -17.97129 -17.24986 -16.92921 -16.80023 -16.19025 -15.69691 -15.14307 -14.88825 -14.48063 -14.39000 -14.17457 -14.01120 -13.27379 -13.07867 -12.85455 -12.76737 -12.57072 -12.43321 -12.18241 -12.08911 -11.89600 -11.75419 -11.45591 -11.30124 -10.93786 -10.65918 -9.99904 -8.27051 -8.19384 -6.38974 0.04613 0.43420 1.43118 1.45159 1.52446 1.76509 2.09701 2.39125 2.62014 3.09404 3.41769 3.72768 3.76722 4.00009 4.13062 4.18168 4.23774 4.34200 4.37267 4.65495 4.76419 4.79757 4.88775 4.89511 5.03637 5.10850 5.13636 5.15762 5.28251 5.29020 5.38792 5.45293 5.69992 5.78543 5.90982 5.96762 6.39919 6.70614 6.98517 7.31190 8.85335 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.008571 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.628216 B = 3266.079457 C = 4376.178685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.032 4.032 3 C -0.125 4.125 4 C 0.150 3.850 5 N -0.467 5.467 6 C -0.043 4.043 7 C -0.023 4.023 8 C -0.096 4.096 9 C -0.114 4.114 10 C -0.148 4.148 11 C 0.074 3.926 12 C 0.071 3.929 13 C -0.548 4.548 14 H 0.087 0.913 15 C 0.011 3.989 16 N -0.924 5.924 17 Si 0.967 3.033 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.266 1.266 21 N -0.367 5.367 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.210 0.790 30 H 0.182 0.818 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 -1.339 10.289 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.052 4.052 3 C -0.183 4.183 4 C -0.105 4.105 5 N -0.182 5.182 6 C -0.197 4.197 7 C -0.132 4.132 8 C -0.115 4.115 9 C -0.135 4.135 10 C -0.168 4.168 11 C -0.027 4.027 12 C 0.034 3.966 13 C -0.585 4.585 14 H 0.105 0.895 15 C -0.189 4.189 16 N -0.562 5.562 17 Si 0.791 3.209 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.191 1.191 21 N -0.037 5.037 22 H 0.088 0.912 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.226 0.774 30 H 0.199 0.801 31 H 0.188 0.812 32 H 0.177 0.823 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.382 -0.576 10.222 10.245 hybrid contribution 0.913 -0.809 -1.164 1.686 sum 0.531 -1.385 9.057 9.178 Atomic orbital electron populations 1.21636 0.92007 1.01418 1.03063 1.19984 0.97758 0.96318 0.91127 1.21666 0.99788 0.93879 1.03012 1.23307 0.96679 0.94251 0.96273 1.69823 1.24553 1.25074 0.98740 1.23021 0.99741 0.96588 1.00353 1.20389 1.05854 1.03537 0.83423 1.20873 0.94925 0.93569 1.02101 1.21512 1.00265 1.00807 0.90890 1.21305 0.99057 0.97328 0.99105 1.21113 0.95382 0.95496 0.90755 1.18087 0.97146 0.96421 0.84939 1.21643 1.17191 1.28042 0.91668 0.89535 1.25910 0.97424 0.95960 0.99591 1.70068 1.36066 1.38072 1.12040 0.85463 0.79083 0.79225 0.77128 1.18822 1.21148 1.19082 1.43051 1.28561 1.24372 1.07760 0.91220 0.90396 0.94163 0.90068 0.90368 0.91322 0.94702 0.77370 0.80108 0.81207 0.82280 0.96479 0.96596 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 9.11 71.98 0.66 -3.41 16 2 C -0.03 -1.23 2.96 -11.54 -0.03 -1.27 16 3 C -0.13 -4.29 9.17 71.98 0.66 -3.63 16 4 C 0.15 6.18 6.50 138.01 0.90 7.07 16 5 N -0.47 -18.08 11.10 -185.91 -2.06 -20.14 16 6 C -0.04 -1.43 12.02 84.39 1.01 -0.42 16 7 C -0.02 -0.82 6.80 38.77 0.26 -0.56 16 8 C -0.10 -2.68 10.11 22.39 0.23 -2.45 16 9 C -0.11 -3.30 10.07 22.35 0.23 -3.07 16 10 C -0.15 -5.64 9.08 22.08 0.20 -5.44 16 11 C 0.07 3.28 6.76 40.92 0.28 3.55 16 12 C 0.07 3.63 3.56 29.10 0.10 3.74 16 13 C -0.55 -28.68 8.67 25.60 0.22 -28.46 16 14 H 0.09 4.16 5.02 -2.91 -0.01 4.15 16 15 C 0.01 0.58 5.46 84.66 0.46 1.04 16 16 N -0.92 -52.55 13.29 21.45 0.28 -52.27 16 17 Si 0.97 41.20 29.54 68.60 2.03 43.23 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 N -0.37 -15.51 2.94 -324.75 -0.96 -16.47 16 22 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.08 3.66 4.07 -2.39 -0.01 3.65 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.21 5.10 8.06 -2.91 -0.02 5.08 16 30 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 32 H 0.16 6.06 5.19 -2.91 -0.02 6.04 16 33 H 0.02 0.95 6.91 -2.39 -0.02 0.93 16 34 H 0.02 0.90 7.42 -2.39 -0.02 0.88 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -63.68 288.39 5.56 -58.13 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.09 Total: 20.83 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 5.17 Total: -33.31 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.73 Total: -88.88 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -63.68 5.56 -58.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260566588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.733 kcal (2) G-P(sol) polarization free energy of solvation -63.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds