Wall clock time and date at job start Mon Mar 30 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47139 * 2 1 4 4 C 1.50705 * 109.46463 * 119.99905 * 2 1 3 5 5 C 1.38518 * 126.13536 * 303.76182 * 4 2 1 6 6 C 1.40861 * 134.75499 * 359.97438 * 5 4 2 7 7 C 1.37530 * 120.66296 * 180.02562 * 6 5 4 8 8 C 1.38133 * 122.50635 * 359.97438 * 7 6 5 9 9 C 1.40407 * 121.20462 * 0.02793 * 8 7 6 10 10 C 1.40213 * 120.74031 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00252 * 154.64624 * 10 9 8 12 12 C 1.40018 * 120.00135 * 334.63815 * 10 9 8 13 13 N 1.30834 * 119.99869 * 334.55866 * 12 10 9 14 14 Si 1.86798 * 119.99899 * 154.55579 * 12 10 9 15 15 H 1.48502 * 109.47017 * 180.02562 * 14 12 10 16 16 H 1.48496 * 109.47304 * 300.00143 * 14 12 10 17 17 H 1.48503 * 109.47163 * 60.00317 * 14 12 10 18 18 C 1.47090 * 106.25777 * 180.27312 * 5 4 2 19 19 N 1.31231 * 107.04444 * 0.15338 * 18 5 4 20 20 N 1.34234 * 126.12853 * 124.66218 * 4 2 1 21 21 C 1.46504 * 125.06804 * 359.32031 * 20 4 2 22 22 H 1.08989 * 109.47549 * 185.11761 * 1 2 3 23 23 H 1.09006 * 109.47253 * 305.12557 * 1 2 3 24 24 H 1.09009 * 109.46988 * 65.11714 * 1 2 3 25 25 H 1.08999 * 109.47145 * 239.99485 * 2 1 3 26 26 H 1.08999 * 109.46847 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47309 * 299.99296 * 3 2 1 28 28 H 1.08999 * 109.47522 * 59.99716 * 3 2 1 29 29 H 1.08000 * 119.67091 * 359.97438 * 6 5 4 30 30 H 1.07993 * 118.74475 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.39856 * 179.97438 * 8 7 6 32 32 H 0.97002 * 119.99713 * 354.10739 * 13 12 10 33 33 H 1.08997 * 109.46958 * 265.86630 * 21 20 4 34 34 H 1.08992 * 109.46768 * 25.86665 * 21 20 4 35 35 H 1.08998 * 109.47074 * 145.86701 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.7182 -0.3936 2.5420 6 6 0.9155 0.5844 3.1611 7 6 0.8070 0.6383 4.5310 8 6 1.4653 -0.2461 5.3632 9 6 2.2895 -1.2573 4.8440 10 6 2.9536 -2.1495 5.6977 11 1 3.2346 -3.1297 5.3418 12 6 3.2527 -1.7697 7.0118 13 7 3.3876 -0.5034 7.3121 14 14 3.4592 -3.0708 8.3360 15 1 3.7693 -2.4140 9.6313 16 1 2.2015 -3.8497 8.4652 17 1 4.5705 -3.9832 7.9646 18 6 2.4465 -1.3553 3.3836 19 7 3.1169 -2.1428 2.5759 20 7 2.8773 -1.7531 1.2530 21 6 3.4526 -2.3959 0.0689 22 1 -0.3634 -1.0234 0.0917 23 1 -0.3634 0.5913 0.8406 24 1 -0.3633 0.4324 -0.9324 25 1 1.8933 -0.5139 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 0.3805 1.2996 2.5539 30 1 0.1833 1.4012 4.9730 31 1 1.3445 -0.1576 6.4327 32 1 3.3654 0.1664 6.6108 33 1 2.8364 -3.2483 -0.2173 34 1 3.4868 -1.6803 -0.7525 35 1 4.4626 -2.7375 0.2954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260569268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:28 Heat of formation + Delta-G solvation = 67.100490 kcal Electronic energy + Delta-G solvation = -17444.633002 eV Core-core repulsion = 14829.174308 eV Total energy + Delta-G solvation = -2615.458694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19443 -36.28583 -35.03150 -33.71933 -31.57327 -29.67197 -27.63677 -26.90070 -26.30247 -24.81484 -22.30403 -21.13438 -20.11264 -18.89954 -17.17883 -16.10717 -15.82970 -14.86029 -14.34417 -14.15562 -13.97778 -13.50289 -12.95707 -12.92544 -12.60011 -12.39060 -12.29983 -11.91106 -11.75170 -11.34394 -11.07635 -10.95406 -10.77247 -10.58804 -10.44919 -10.06575 -9.94365 -9.91439 -9.24851 -8.90909 -8.68775 -7.48336 -7.35762 -6.59599 -4.26122 1.92134 3.05888 3.13369 3.23900 3.30766 3.35149 3.61787 3.94014 4.55774 4.98213 5.00260 5.11086 5.34996 5.46558 5.52608 5.57467 5.72594 5.76328 5.82564 6.00899 6.08166 6.11127 6.26964 6.43289 6.50028 6.53943 6.79573 6.95168 7.20641 7.34302 7.48217 7.64889 7.82562 7.93852 8.07931 8.20598 8.37406 8.54853 8.73881 8.98063 9.89075 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.007018 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.627512 B = 3988.865859 C = 4581.148203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.141 4.141 4 C 0.010 3.990 5 C -0.113 4.113 6 C -0.257 4.257 7 C -0.039 4.039 8 C -0.315 4.315 9 C 0.133 3.867 10 C -0.461 4.461 11 H 0.083 0.917 12 C 0.032 3.968 13 N -0.768 5.768 14 Si 1.068 2.932 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.274 1.274 18 C 0.075 3.925 19 N -0.296 5.296 20 N -0.361 5.361 21 C 0.105 3.895 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.308 0.692 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 -0.017 -10.078 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.199 4.199 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.278 4.278 7 C -0.059 4.059 8 C -0.337 4.337 9 C 0.127 3.873 10 C -0.488 4.488 11 H 0.101 0.899 12 C -0.193 4.193 13 N -0.389 5.389 14 Si 0.890 3.110 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.199 1.199 18 C -0.084 4.084 19 N -0.120 5.120 20 N -0.143 5.143 21 C -0.037 4.037 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.300 -1.223 -8.659 8.750 hybrid contribution -0.748 0.874 -1.804 2.140 sum -1.049 -0.349 -10.463 10.521 Atomic orbital electron populations 1.21816 0.94100 1.02168 1.01709 1.19452 0.95955 0.95215 0.92560 1.21820 1.00797 0.95229 1.02032 1.20545 1.00517 0.95235 0.95432 1.19012 1.03346 1.00323 0.89571 1.19316 1.10944 1.04120 0.93392 1.20121 0.96490 0.96326 0.92974 1.20276 1.10016 1.05384 0.98064 1.17669 0.91850 0.92984 0.84829 1.20652 1.29213 1.01613 0.97333 0.89860 1.27238 0.92234 0.99876 0.99902 1.70392 1.25571 1.02592 1.40360 0.83596 0.78179 0.74257 0.74933 1.19549 1.19663 1.19886 1.22566 0.96496 0.94248 0.95089 1.77065 1.25651 1.23556 0.85735 1.47958 1.35895 1.24958 1.05446 1.21628 0.99598 0.97793 0.84678 0.92904 0.91349 0.92911 0.91627 0.93095 0.92792 0.91427 0.89573 0.89915 0.87794 0.87761 0.91660 0.90290 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.99 37.16 0.33 -1.66 16 2 C -0.01 -0.17 3.14 -91.77 -0.29 -0.46 16 3 C -0.14 -2.00 9.11 37.15 0.34 -1.66 16 4 C 0.01 0.21 5.71 -81.44 -0.47 -0.26 16 5 C -0.11 -2.72 5.91 -105.21 -0.62 -3.35 16 6 C -0.26 -5.99 9.14 -38.85 -0.36 -6.35 16 7 C -0.04 -0.96 9.87 -39.88 -0.39 -1.35 16 8 C -0.31 -8.37 7.92 -38.80 -0.31 -8.68 16 9 C 0.13 3.68 5.45 -104.70 -0.57 3.11 16 10 C -0.46 -12.49 9.00 -38.17 -0.34 -12.83 16 11 H 0.08 2.25 7.96 -52.49 -0.42 1.83 16 12 C 0.03 0.82 4.93 -17.31 -0.09 0.73 16 13 N -0.77 -20.18 12.31 55.55 0.68 -19.50 16 14 Si 1.07 21.28 30.00 -169.99 -5.10 16.18 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 C 0.07 2.01 7.46 -80.89 -0.60 1.41 16 19 N -0.30 -7.47 12.50 34.42 0.43 -7.04 16 20 N -0.36 -7.44 3.96 -63.22 -0.25 -7.69 16 21 C 0.11 1.50 11.12 59.85 0.67 2.16 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 1.06 6.29 -51.93 -0.33 0.73 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.07 0.85 6.60 -51.93 -0.34 0.51 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.07 7.03 -51.93 -0.37 0.70 16 29 H 0.09 1.79 6.19 -52.49 -0.33 1.46 16 30 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.10 2.81 6.44 -52.49 -0.34 2.47 16 32 H 0.31 8.40 6.69 -40.82 -0.27 8.12 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.88 6.79 -51.93 -0.35 0.53 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -30.52 288.76 -7.08 -37.60 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.50 Total: 5.28 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -2.70 Total: -29.18 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.86 Total: -34.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.10 Total: 16.18 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.52 -7.08 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.700 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds