Wall clock time and date at job start Mon Mar 30 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47139 * 2 1 4 4 C 1.50705 * 109.46463 * 119.99905 * 2 1 3 5 5 C 1.38518 * 126.13536 * 303.76182 * 4 2 1 6 6 C 1.40861 * 134.75499 * 359.97438 * 5 4 2 7 7 C 1.37530 * 120.66296 * 180.02562 * 6 5 4 8 8 C 1.38133 * 122.50635 * 359.97438 * 7 6 5 9 9 C 1.40407 * 121.20462 * 0.02793 * 8 7 6 10 10 C 1.40213 * 120.74031 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00252 * 154.64624 * 10 9 8 12 12 C 1.40018 * 120.00135 * 334.63815 * 10 9 8 13 13 N 1.30834 * 119.99869 * 334.55866 * 12 10 9 14 14 Si 1.86798 * 119.99899 * 154.55579 * 12 10 9 15 15 H 1.48502 * 109.47017 * 180.02562 * 14 12 10 16 16 H 1.48496 * 109.47304 * 300.00143 * 14 12 10 17 17 H 1.48503 * 109.47163 * 60.00317 * 14 12 10 18 18 C 1.47090 * 106.25777 * 180.27312 * 5 4 2 19 19 N 1.31231 * 107.04444 * 0.15338 * 18 5 4 20 20 N 1.34234 * 126.12853 * 124.66218 * 4 2 1 21 21 C 1.46504 * 125.06804 * 359.32031 * 20 4 2 22 22 H 1.08989 * 109.47549 * 185.11761 * 1 2 3 23 23 H 1.09006 * 109.47253 * 305.12557 * 1 2 3 24 24 H 1.09009 * 109.46988 * 65.11714 * 1 2 3 25 25 H 1.08999 * 109.47145 * 239.99485 * 2 1 3 26 26 H 1.08999 * 109.46847 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47309 * 299.99296 * 3 2 1 28 28 H 1.08999 * 109.47522 * 59.99716 * 3 2 1 29 29 H 1.08000 * 119.67091 * 359.97438 * 6 5 4 30 30 H 1.07993 * 118.74475 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.39856 * 179.97438 * 8 7 6 32 32 H 0.97002 * 119.99713 * 354.10739 * 13 12 10 33 33 H 1.08997 * 109.46958 * 265.86630 * 21 20 4 34 34 H 1.08992 * 109.46768 * 25.86665 * 21 20 4 35 35 H 1.08998 * 109.47074 * 145.86701 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.7182 -0.3936 2.5420 6 6 0.9155 0.5844 3.1611 7 6 0.8070 0.6383 4.5310 8 6 1.4653 -0.2461 5.3632 9 6 2.2895 -1.2573 4.8440 10 6 2.9536 -2.1495 5.6977 11 1 3.2346 -3.1297 5.3418 12 6 3.2527 -1.7697 7.0118 13 7 3.3876 -0.5034 7.3121 14 14 3.4592 -3.0708 8.3360 15 1 3.7693 -2.4140 9.6313 16 1 2.2015 -3.8497 8.4652 17 1 4.5705 -3.9832 7.9646 18 6 2.4465 -1.3553 3.3836 19 7 3.1169 -2.1428 2.5759 20 7 2.8773 -1.7531 1.2530 21 6 3.4526 -2.3959 0.0689 22 1 -0.3634 -1.0234 0.0917 23 1 -0.3634 0.5913 0.8406 24 1 -0.3633 0.4324 -0.9324 25 1 1.8933 -0.5139 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 0.3805 1.2996 2.5539 30 1 0.1833 1.4012 4.9730 31 1 1.3445 -0.1576 6.4327 32 1 3.3654 0.1664 6.6108 33 1 2.8364 -3.2483 -0.2173 34 1 3.4868 -1.6803 -0.7525 35 1 4.4626 -2.7375 0.2954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260569268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:28 Heat of formation + Delta-G solvation = 48.970308 kcal Electronic energy + Delta-G solvation = -17445.419186 eV Core-core repulsion = 14829.174308 eV Total energy + Delta-G solvation = -2616.244878 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94621 -38.13680 -36.39823 -35.54934 -33.19882 -31.49199 -29.41671 -28.00731 -27.91345 -26.68122 -23.79176 -22.91691 -21.90153 -20.58511 -18.93050 -17.84185 -17.46885 -16.40113 -16.05875 -15.74709 -15.59936 -15.06901 -14.61859 -14.16714 -14.07688 -13.89178 -13.70507 -13.47547 -13.07963 -12.92471 -12.59067 -12.34855 -12.17660 -12.12866 -11.99096 -11.81284 -11.71622 -11.54853 -11.07830 -10.73767 -10.50431 -9.39823 -9.24593 -8.48970 -6.25715 0.13018 1.31371 1.45324 1.48325 1.71664 1.78737 1.84230 2.28890 2.67604 3.49781 3.57067 3.60458 3.92294 4.23293 4.24719 4.30692 4.37449 4.49604 4.61068 4.66727 4.76680 4.83730 4.95670 5.00141 5.05280 5.12096 5.24550 5.36979 5.39180 5.47639 5.54627 5.70353 5.90874 6.14313 6.17273 6.33231 6.47480 6.65768 6.80757 7.09887 7.91394 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.007018 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.627512 B = 3988.865859 C = 4581.148203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.015 4.015 3 C -0.139 4.139 4 C 0.058 3.942 5 C -0.167 4.167 6 C -0.216 4.216 7 C -0.077 4.077 8 C -0.317 4.317 9 C 0.099 3.901 10 C -0.510 4.510 11 H 0.067 0.933 12 C 0.001 3.999 13 N -0.793 5.793 14 Si 1.120 2.880 15 H -0.263 1.263 16 H -0.262 1.262 17 H -0.259 1.259 18 C 0.037 3.963 19 N -0.341 5.341 20 N -0.349 5.349 21 C 0.086 3.914 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.288 0.712 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 0.413 -13.924 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.197 4.197 4 C -0.075 4.075 5 C -0.177 4.177 6 C -0.237 4.237 7 C -0.096 4.096 8 C -0.340 4.340 9 C 0.093 3.907 10 C -0.537 4.537 11 H 0.085 0.915 12 C -0.217 4.217 13 N -0.415 5.415 14 Si 0.935 3.065 15 H -0.187 1.187 16 H -0.186 1.186 17 H -0.183 1.183 18 C -0.119 4.119 19 N -0.167 5.167 20 N -0.128 5.128 21 C -0.053 4.053 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.006 -0.817 -12.518 12.585 hybrid contribution -0.613 0.843 -1.175 1.571 sum -1.619 0.026 -13.693 13.789 Atomic orbital electron populations 1.21816 0.92815 1.01746 1.03222 1.19842 0.96901 0.95741 0.90990 1.21817 1.00589 0.94198 1.03050 1.21571 0.96709 0.92978 0.96239 1.19456 1.05520 1.01554 0.91124 1.19761 1.07930 1.02712 0.93249 1.20368 0.98144 0.97456 0.93640 1.20311 1.10075 1.05926 0.97649 1.18008 0.92637 0.93801 0.86241 1.20640 1.32651 1.01458 0.98999 0.91489 1.28649 0.90463 1.01022 1.01532 1.70508 1.28832 1.02918 1.39241 0.83002 0.78941 0.72068 0.72481 1.18666 1.18638 1.18320 1.22712 0.98011 0.95889 0.95289 1.76998 1.27247 1.24875 0.87621 1.48633 1.34262 1.24157 1.05779 1.22256 1.00224 0.99675 0.83146 0.93775 0.93049 0.88839 0.87681 0.93503 0.88764 0.93506 0.86368 0.87502 0.89482 0.89892 0.89221 0.85987 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.99 71.98 0.65 -2.55 16 2 C -0.01 -0.36 3.14 -11.54 -0.04 -0.40 16 3 C -0.14 -3.20 9.11 71.98 0.66 -2.55 16 4 C 0.06 2.18 5.71 42.26 0.24 2.42 16 5 C -0.17 -7.96 5.91 -20.25 -0.12 -8.08 16 6 C -0.22 -9.91 9.14 22.74 0.21 -9.70 16 7 C -0.08 -3.80 9.87 22.08 0.22 -3.59 16 8 C -0.32 -17.90 7.92 22.77 0.18 -17.72 16 9 C 0.10 5.85 5.45 -19.91 -0.11 5.74 16 10 C -0.51 -29.90 9.00 23.18 0.21 -29.69 16 11 H 0.07 3.95 7.96 -2.91 -0.02 3.93 16 12 C 0.00 0.08 4.93 85.27 0.42 0.50 16 13 N -0.79 -44.69 12.31 21.84 0.27 -44.42 16 14 Si 1.12 44.99 30.00 68.60 2.06 47.04 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 18 C 0.04 2.04 7.46 43.92 0.33 2.37 16 19 N -0.34 -17.55 12.50 -45.03 -0.56 -18.12 16 20 N -0.35 -13.62 3.96 -353.93 -1.40 -15.02 16 21 C 0.09 2.09 11.12 127.77 1.42 3.51 16 22 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.05 1.37 6.29 -2.38 -0.01 1.36 16 24 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.11 1.91 6.60 -2.39 -0.02 1.89 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.29 7.03 -2.39 -0.02 1.27 16 29 H 0.12 4.58 6.19 -2.91 -0.02 4.56 16 30 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.09 5.08 6.44 -2.91 -0.02 5.06 16 32 H 0.29 17.09 6.69 -92.71 -0.62 16.47 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.12 1.94 6.79 -2.39 -0.02 1.92 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -73.61 288.76 5.86 -67.74 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 1.24 Total: 22.50 kcal Atomic # 6 Polarization: -64.00 SS G_CDS: 4.26 Total: -59.73 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -1.69 Total: -77.55 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.06 Total: 47.04 kcal Total: -73.61 5.86 -67.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.715 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds