Wall clock time and date at job start Mon Mar 30 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46717 * 2 1 4 4 C 1.53001 * 109.46885 * 240.00385 * 2 1 3 5 5 C 1.50706 * 109.46629 * 184.99693 * 4 2 1 6 6 N 1.34536 * 126.52066 * 265.01898 * 5 4 2 7 7 H 0.96996 * 123.98385 * 359.95237 * 6 5 4 8 8 N 1.28482 * 112.03282 * 179.97438 * 6 5 4 9 9 C 1.32412 * 110.69471 * 0.02562 * 8 6 5 10 10 C 1.40085 * 135.16986 * 180.02562 * 9 8 6 11 11 C 1.39796 * 119.87219 * 179.97438 * 10 9 8 12 12 C 1.40964 * 119.42799 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99830 * 334.69586 * 12 11 10 14 14 C 1.39847 * 120.00286 * 154.69302 * 12 11 10 15 15 N 1.30892 * 120.00253 * 341.95785 * 14 12 11 16 16 Si 1.86802 * 120.00312 * 161.95499 * 14 12 11 17 17 H 1.48496 * 109.46962 * 94.62776 * 16 14 12 18 18 H 1.48494 * 109.47463 * 214.62916 * 16 14 12 19 19 H 1.48505 * 109.46748 * 334.63300 * 16 14 12 20 20 C 1.45987 * 121.15401 * 0.02562 * 11 10 9 21 21 C 1.35187 * 120.80130 * 0.02562 * 20 11 10 22 22 C 1.37828 * 126.52313 * 84.71399 * 5 4 2 23 23 H 1.09000 * 109.47139 * 59.99837 * 1 2 3 24 24 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46993 * 299.99771 * 1 2 3 26 26 H 1.08998 * 109.47229 * 119.99629 * 2 1 3 27 27 H 1.09000 * 109.47449 * 299.99972 * 3 2 1 28 28 H 1.09007 * 109.47202 * 60.00357 * 3 2 1 29 29 H 1.09004 * 109.46926 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46694 * 304.99342 * 4 2 1 31 31 H 1.08992 * 109.47312 * 64.99987 * 4 2 1 32 32 H 1.08003 * 120.06235 * 359.94898 * 10 9 8 33 33 H 0.97002 * 120.00314 * 179.97438 * 15 14 12 34 34 H 1.08001 * 119.60151 * 179.97438 * 20 11 10 35 35 H 1.07995 * 120.27653 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.8292 -1.1889 6 7 4.4285 0.0137 -1.7489 7 1 4.1807 0.7980 -2.2630 8 7 5.6419 -0.3428 -1.5226 9 6 5.6767 -1.4494 -0.7962 10 6 6.6901 -2.2606 -0.2696 11 6 6.3569 -3.3943 0.4774 12 6 7.3842 -4.2037 1.0034 13 1 8.3548 -4.2199 0.5300 14 6 7.1466 -4.9857 2.1382 15 7 6.1270 -4.7196 2.9147 16 14 8.2843 -6.4101 2.5460 17 1 9.3242 -5.9545 3.5032 18 1 7.4984 -7.5122 3.1565 19 1 8.9348 -6.8956 1.3025 20 6 4.9636 -3.7547 0.7223 21 6 3.9564 -2.9988 0.2308 22 6 4.2688 -1.8072 -0.5447 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6054 -1.7197 -1.2951 31 1 1.7516 -0.1582 -2.1370 32 1 7.7269 -2.0109 -0.4407 33 1 5.9620 -5.2622 3.7016 34 1 4.7347 -4.6364 1.3026 35 1 2.9286 -3.2735 0.4168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260596422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:04 Heat of formation + Delta-G solvation = 58.041583 kcal Electronic energy + Delta-G solvation = -17037.428497 eV Core-core repulsion = 14421.576978 eV Total energy + Delta-G solvation = -2615.851518 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09067 -36.31257 -35.95506 -33.22087 -31.01282 -29.59493 -28.85093 -27.10515 -25.66243 -25.60501 -21.93039 -20.89065 -20.07748 -18.58071 -17.47377 -16.60954 -15.48871 -15.15046 -14.73799 -14.58910 -14.15113 -13.50927 -13.17757 -12.92009 -12.49400 -12.30928 -12.21672 -11.82773 -11.55816 -11.17307 -11.10166 -10.89548 -10.79948 -10.71843 -10.48936 -10.35833 -10.07385 -9.82107 -9.18466 -8.79717 -8.67202 -7.31134 -6.93347 -6.44875 -4.32603 2.12640 2.88449 3.05565 3.11514 3.34617 3.82841 3.88696 3.93614 4.56529 4.96826 4.98504 5.05344 5.49566 5.53239 5.64320 5.65836 5.74480 5.81269 5.85206 5.95439 6.04552 6.17249 6.24582 6.34519 6.44631 6.68524 6.78136 6.93025 7.02806 7.13922 7.59046 7.74633 7.92614 8.00535 8.19899 8.27577 8.49486 8.85840 8.94579 9.38392 10.08976 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034519 B = 0.005755 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.951677 B = 4864.047636 C = 5410.265102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.034 4.034 5 C 0.011 3.989 6 N -0.388 5.388 7 H 0.424 0.576 8 N -0.377 5.377 9 C 0.134 3.866 10 C -0.291 4.291 11 C 0.134 3.866 12 C -0.446 4.446 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.791 5.791 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.087 4.087 21 C -0.106 4.106 22 C -0.198 4.198 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.283 0.717 34 H 0.124 0.876 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.477 4.278 -2.985 10.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.073 4.073 5 C -0.122 4.122 6 N -0.092 5.092 7 H 0.265 0.735 8 N -0.210 5.210 9 C -0.012 4.012 10 C -0.317 4.317 11 C 0.128 3.872 12 C -0.476 4.476 13 H 0.101 0.899 14 C -0.143 4.143 15 N -0.416 5.416 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.107 4.107 21 C -0.126 4.126 22 C -0.208 4.208 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.859 5.035 -3.317 10.716 hybrid contribution -0.151 -0.726 0.456 0.871 sum -9.010 4.309 -2.861 10.389 Atomic orbital electron populations 1.21836 0.95284 1.01722 1.01403 1.21133 0.95000 0.96284 0.98877 1.21865 1.01573 0.95963 1.01115 1.20051 0.88224 1.01444 0.97556 1.20823 0.92040 0.95269 1.04019 1.42792 1.03163 1.22190 1.41009 0.73548 1.73556 1.00650 1.19485 1.27340 1.20448 0.93666 0.91801 0.95286 1.19371 0.94632 0.99460 1.18191 1.18221 0.91437 0.89155 0.88413 1.19593 0.99080 1.20064 1.08860 0.89876 1.25996 0.95571 0.97481 0.95272 1.69853 1.26201 1.34886 1.10698 0.86258 0.80411 0.80305 0.79589 1.19439 1.19962 1.18245 1.22220 0.92368 0.99149 0.96925 1.20711 0.97242 0.94261 1.00430 1.20115 0.93395 0.99485 1.07839 0.92974 0.92560 0.92786 0.90332 0.93193 0.92863 0.92479 0.90056 0.91861 0.88892 0.90621 0.85795 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.09 -1.20 2.91 -90.62 -0.26 -1.47 16 3 C -0.15 -1.81 9.01 37.16 0.33 -1.48 16 4 C -0.03 -0.46 5.26 -27.88 -0.15 -0.61 16 5 C 0.01 0.20 5.66 -81.55 -0.46 -0.26 16 6 N -0.39 -7.28 6.31 33.86 0.21 -7.06 16 7 H 0.42 6.11 8.96 -190.44 -1.71 4.41 16 8 N -0.38 -8.82 12.23 33.17 0.41 -8.41 16 9 C 0.13 3.45 7.50 -83.18 -0.62 2.83 16 10 C -0.29 -7.92 9.80 -38.31 -0.38 -8.29 16 11 C 0.13 3.63 5.68 -105.18 -0.60 3.03 16 12 C -0.45 -11.74 8.98 -37.95 -0.34 -12.08 16 13 H 0.08 2.13 7.91 -52.49 -0.41 1.71 16 14 C 0.08 1.84 5.12 -17.35 -0.09 1.75 16 15 N -0.79 -19.68 10.94 55.54 0.61 -19.07 16 16 Si 0.91 18.11 29.60 -169.99 -5.03 13.07 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 C -0.09 -2.20 8.70 -37.57 -0.33 -2.53 16 21 C -0.11 -2.44 10.26 -37.75 -0.39 -2.83 16 22 C -0.20 -4.60 6.54 -103.38 -0.68 -5.28 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.83 7.06 -51.93 -0.37 0.46 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 33 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 34 H 0.12 3.10 6.22 -52.49 -0.33 2.78 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -29.54 294.68 -9.15 -38.69 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.18 Total: 6.68 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -3.61 Total: -28.35 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 1.23 Total: -34.54 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.54 -9.15 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260596422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.736 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds