Wall clock time and date at job start Mon Mar 30 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46717 * 2 1 4 4 C 1.53001 * 109.46885 * 240.00385 * 2 1 3 5 5 C 1.50706 * 109.46629 * 184.99693 * 4 2 1 6 6 N 1.34536 * 126.52066 * 265.01898 * 5 4 2 7 7 H 0.96996 * 123.98385 * 359.95237 * 6 5 4 8 8 N 1.28482 * 112.03282 * 179.97438 * 6 5 4 9 9 C 1.32412 * 110.69471 * 0.02562 * 8 6 5 10 10 C 1.40085 * 135.16986 * 180.02562 * 9 8 6 11 11 C 1.39796 * 119.87219 * 179.97438 * 10 9 8 12 12 C 1.40964 * 119.42799 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99830 * 334.69586 * 12 11 10 14 14 C 1.39847 * 120.00286 * 154.69302 * 12 11 10 15 15 N 1.30892 * 120.00253 * 341.95785 * 14 12 11 16 16 Si 1.86802 * 120.00312 * 161.95499 * 14 12 11 17 17 H 1.48496 * 109.46962 * 94.62776 * 16 14 12 18 18 H 1.48494 * 109.47463 * 214.62916 * 16 14 12 19 19 H 1.48505 * 109.46748 * 334.63300 * 16 14 12 20 20 C 1.45987 * 121.15401 * 0.02562 * 11 10 9 21 21 C 1.35187 * 120.80130 * 0.02562 * 20 11 10 22 22 C 1.37828 * 126.52313 * 84.71399 * 5 4 2 23 23 H 1.09000 * 109.47139 * 59.99837 * 1 2 3 24 24 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46993 * 299.99771 * 1 2 3 26 26 H 1.08998 * 109.47229 * 119.99629 * 2 1 3 27 27 H 1.09000 * 109.47449 * 299.99972 * 3 2 1 28 28 H 1.09007 * 109.47202 * 60.00357 * 3 2 1 29 29 H 1.09004 * 109.46926 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.46694 * 304.99342 * 4 2 1 31 31 H 1.08992 * 109.47312 * 64.99987 * 4 2 1 32 32 H 1.08003 * 120.06235 * 359.94898 * 10 9 8 33 33 H 0.97002 * 120.00314 * 179.97438 * 15 14 12 34 34 H 1.08001 * 119.60151 * 179.97438 * 20 11 10 35 35 H 1.07995 * 120.27653 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.8292 -1.1889 6 7 4.4285 0.0137 -1.7489 7 1 4.1807 0.7980 -2.2630 8 7 5.6419 -0.3428 -1.5226 9 6 5.6767 -1.4494 -0.7962 10 6 6.6901 -2.2606 -0.2696 11 6 6.3569 -3.3943 0.4774 12 6 7.3842 -4.2037 1.0034 13 1 8.3548 -4.2199 0.5300 14 6 7.1466 -4.9857 2.1382 15 7 6.1270 -4.7196 2.9147 16 14 8.2843 -6.4101 2.5460 17 1 9.3242 -5.9545 3.5032 18 1 7.4984 -7.5122 3.1565 19 1 8.9348 -6.8956 1.3025 20 6 4.9636 -3.7547 0.7223 21 6 3.9564 -2.9988 0.2308 22 6 4.2688 -1.8072 -0.5447 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6054 -1.7197 -1.2951 31 1 1.7516 -0.1582 -2.1370 32 1 7.7269 -2.0109 -0.4407 33 1 5.9620 -5.2622 3.7016 34 1 4.7347 -4.6364 1.3026 35 1 2.9286 -3.2735 0.4168 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260596422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:03 Heat of formation + Delta-G solvation = 41.148638 kcal Electronic energy + Delta-G solvation = -17038.161030 eV Core-core repulsion = 14421.576978 eV Total energy + Delta-G solvation = -2616.584051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.80562 -37.91974 -37.30589 -35.09555 -32.62995 -31.44835 -30.51220 -28.01303 -27.52124 -27.01518 -23.74234 -22.68391 -21.22864 -20.28103 -19.33535 -18.17683 -17.32803 -16.91446 -16.22299 -15.80754 -15.60546 -14.80049 -14.67697 -14.59560 -14.23061 -13.78085 -13.23397 -13.06676 -12.87512 -12.80374 -12.68652 -12.46440 -12.21472 -11.96788 -11.91852 -11.78488 -11.59045 -11.51129 -11.01228 -10.63444 -10.44574 -9.18579 -8.78347 -8.27945 -6.32547 0.36215 1.19493 1.41617 1.55083 1.62502 1.99150 2.22125 2.44671 2.68477 3.66686 3.77512 3.94217 3.99841 4.07975 4.31780 4.43260 4.49983 4.76074 4.81900 4.89944 4.94121 4.98932 5.05836 5.06535 5.13216 5.18785 5.23004 5.33115 5.46150 5.53695 5.70374 5.85135 5.99917 6.13441 6.27800 6.51882 6.66570 6.91890 6.99156 7.59674 8.25988 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034519 B = 0.005755 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.951677 B = 4864.047636 C = 5410.265102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.034 4.034 5 C 0.055 3.945 6 N -0.368 5.368 7 H 0.446 0.554 8 N -0.400 5.400 9 C 0.103 3.897 10 C -0.329 4.329 11 C 0.115 3.885 12 C -0.484 4.484 13 H 0.074 0.926 14 C 0.041 3.959 15 N -0.813 5.813 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.257 1.257 19 H -0.260 1.260 20 C -0.124 4.124 21 C -0.082 4.082 22 C -0.243 4.243 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.295 0.705 34 H 0.121 0.879 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 4.547 -3.319 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.073 4.073 5 C -0.080 4.080 6 N -0.074 5.074 7 H 0.291 0.709 8 N -0.235 5.235 9 C -0.043 4.043 10 C -0.355 4.355 11 C 0.109 3.891 12 C -0.513 4.513 13 H 0.093 0.907 14 C -0.176 4.176 15 N -0.438 5.438 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.181 1.181 19 H -0.184 1.184 20 C -0.143 4.143 21 C -0.102 4.102 22 C -0.253 4.253 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.585 5.338 -3.664 13.272 hybrid contribution 0.563 -0.628 0.502 0.982 sum -11.022 4.710 -3.162 12.396 Atomic orbital electron populations 1.21779 0.92583 1.02508 1.02722 1.21084 0.97136 0.95965 0.96874 1.21879 0.99639 0.96083 1.02914 1.20343 0.83929 1.03175 0.99835 1.21515 0.94283 0.92385 0.99807 1.42886 1.02092 1.22479 1.39903 0.70887 1.73468 1.02910 1.19198 1.27920 1.20549 0.94875 0.92656 0.96236 1.19394 0.94268 1.01125 1.20678 1.18560 0.92937 0.89159 0.88403 1.19818 0.98964 1.22058 1.10472 0.90745 1.26825 0.97243 0.99367 0.94160 1.69873 1.27224 1.35677 1.11004 0.85123 0.78255 0.76720 0.79211 1.18772 1.18104 1.18412 1.22126 0.92079 1.00425 0.99689 1.21048 0.98274 0.93074 0.97835 1.20419 0.92857 1.01473 1.10502 0.90976 0.92105 0.92210 0.93237 0.90493 0.92154 0.95385 0.88907 0.88029 0.91029 0.89389 0.86162 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.19 71.98 0.66 -1.53 16 2 C -0.09 -2.02 2.91 -10.79 -0.03 -2.05 16 3 C -0.15 -3.14 9.01 71.98 0.65 -2.49 16 4 C -0.03 -0.80 5.26 29.85 0.16 -0.64 16 5 C 0.06 1.96 5.66 42.05 0.24 2.20 16 6 N -0.37 -13.23 6.31 -46.77 -0.29 -13.53 16 7 H 0.45 11.61 8.96 -219.99 -1.97 9.64 16 8 N -0.40 -19.03 12.23 -48.98 -0.60 -19.63 16 9 C 0.10 5.50 7.50 41.93 0.31 5.81 16 10 C -0.33 -19.27 9.80 23.10 0.23 -19.04 16 11 C 0.12 6.65 5.68 -20.23 -0.11 6.53 16 12 C -0.48 -26.99 8.98 23.33 0.21 -26.78 16 13 H 0.07 4.10 7.91 -2.91 -0.02 4.07 16 14 C 0.04 2.05 5.12 85.22 0.44 2.48 16 15 N -0.81 -41.14 10.94 21.81 0.24 -40.91 16 16 Si 0.99 37.44 29.60 68.60 2.03 39.47 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 18 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 C -0.12 -6.49 8.70 23.58 0.21 -6.28 16 21 C -0.08 -3.81 10.26 23.46 0.24 -3.57 16 22 C -0.24 -11.30 6.54 -19.06 -0.12 -11.42 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.03 0.74 7.06 -2.38 -0.02 0.73 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.30 13.20 8.30 -92.71 -0.77 12.43 16 34 H 0.12 6.24 6.22 -2.91 -0.02 6.22 16 35 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -68.87 294.68 3.56 -65.31 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.88 Total: 26.08 kcal Atomic # 6 Polarization: -59.85 SS G_CDS: 3.07 Total: -56.78 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -0.66 Total: -74.07 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -68.87 3.56 -65.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260596422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.456 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds