Wall clock time and date at job start Mon Mar 30 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47265 * 2 1 4 4 C 1.38247 * 126.04185 * 270.26081 * 3 2 1 5 5 C 1.41122 * 134.81655 * 359.30580 * 4 3 2 6 6 C 1.35652 * 119.53561 * 180.41671 * 5 4 3 7 7 C 1.39683 * 121.72737 * 0.25979 * 6 5 4 8 8 C 1.50704 * 119.09458 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47012 * 89.99373 * 8 7 6 10 10 H 1.07999 * 119.99839 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99679 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99862 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46830 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47131 * 120.00002 * 13 11 9 16 16 H 1.48494 * 109.47211 * 240.00427 * 13 11 9 17 17 C 1.35640 * 121.81566 * 0.02562 * 7 6 5 18 18 C 1.41149 * 119.59528 * 359.97438 * 17 7 6 19 19 N 1.32062 * 134.68118 * 179.97438 * 18 17 7 20 20 N 1.33986 * 126.05013 * 90.01802 * 3 2 1 21 21 C 1.46500 * 125.02189 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47262 * 300.00107 * 1 2 3 23 23 H 1.08993 * 109.47272 * 60.00545 * 1 2 3 24 24 H 1.09003 * 109.46879 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47754 * 239.99312 * 2 1 3 26 26 H 1.09007 * 109.47476 * 119.99508 * 2 1 3 27 27 H 1.08002 * 120.23439 * 0.70104 * 5 4 3 28 28 H 1.08002 * 119.14103 * 180.23373 * 6 5 4 29 29 H 1.08995 * 109.47128 * 209.99500 * 8 7 6 30 30 H 1.09004 * 109.46653 * 329.99945 * 8 7 6 31 31 H 0.97003 * 119.99718 * 180.02562 * 12 11 9 32 32 H 1.08001 * 120.19851 * 180.02562 * 17 7 6 33 33 H 1.09005 * 109.47440 * 270.00146 * 21 20 3 34 34 H 1.09000 * 109.47121 * 29.99426 * 21 20 3 35 35 H 1.09000 * 109.47667 * 149.99564 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2987 2.1894 -1.1178 5 6 2.2294 1.9762 -2.5111 6 6 2.5828 2.9745 -3.3588 7 6 3.0217 4.2151 -2.8903 8 6 3.4000 5.2820 -3.8851 9 6 2.1867 6.1117 -4.2177 10 1 1.2368 5.8889 -3.7546 11 6 2.2897 7.1558 -5.1123 12 7 3.4466 7.4273 -5.6757 13 14 0.7859 8.1847 -5.5240 14 1 -0.3839 7.6787 -4.7618 15 1 1.0398 9.6011 -5.1575 16 1 0.5064 8.0925 -6.9795 17 6 3.1177 4.4856 -1.5646 18 6 2.7666 3.4939 -0.6236 19 7 2.7451 3.4314 0.6954 20 7 2.2955 2.1641 1.0833 21 6 2.1370 1.7161 2.4691 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.8930 1.0263 -2.8999 28 1 2.5238 2.8056 -4.4239 29 1 4.1712 5.9218 -3.4561 30 1 3.7800 4.8138 -4.7932 31 1 3.5191 8.1621 -6.3048 32 1 3.4599 5.4542 -1.2312 33 1 1.1289 1.9479 2.8129 34 1 2.3010 0.6399 2.5240 35 1 2.8630 2.2270 3.1015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260614289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:10 Heat of formation + Delta-G solvation = 76.047425 kcal Electronic energy + Delta-G solvation = -16801.476873 eV Core-core repulsion = 14186.406147 eV Total energy + Delta-G solvation = -2615.070726 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97323 -37.21330 -34.21017 -33.35326 -32.07374 -30.93654 -28.56740 -27.82136 -26.02271 -23.80773 -23.18293 -21.66719 -20.34930 -18.93397 -16.56414 -16.40137 -16.23757 -15.51198 -14.96499 -14.39523 -14.15239 -13.78990 -13.48550 -13.19503 -12.89990 -12.77359 -12.40689 -12.26327 -11.76103 -11.50204 -11.23926 -11.15365 -11.00047 -10.68380 -10.50645 -10.49672 -9.76842 -9.64782 -9.45324 -9.29117 -8.37092 -7.75333 -6.97967 -5.98777 -4.01866 1.14310 2.49084 2.60131 2.92066 3.33772 3.41195 3.46987 4.41497 4.43523 4.49563 4.62994 4.73194 4.93973 5.09794 5.10600 5.25253 5.32109 5.36313 5.50472 5.53483 5.63965 5.94379 5.95936 6.00285 6.03902 6.29617 6.58623 6.78178 7.07035 7.16973 7.21347 7.31550 7.54883 7.68295 7.92629 7.97780 8.15313 8.38263 9.03662 9.61531 11.11188 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.005109 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.915158 B = 5478.832502 C = 5615.505548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.057 4.057 3 C 0.089 3.911 4 C -0.202 4.202 5 C -0.069 4.069 6 C -0.126 4.126 7 C 0.003 3.997 8 C 0.046 3.954 9 C -0.508 4.508 10 H 0.058 0.942 11 C 0.058 3.942 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.131 4.131 18 C 0.118 3.882 19 N -0.326 5.326 20 N -0.335 5.335 21 C 0.094 3.906 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -16.097 12.337 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.047 4.047 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.145 4.145 7 C -0.002 4.002 8 C 0.009 3.991 9 C -0.546 4.546 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.153 4.153 18 C -0.034 4.034 19 N -0.153 5.153 20 N -0.110 5.110 21 C -0.047 4.047 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.530 -15.352 13.526 20.762 hybrid contribution -0.965 0.279 -0.866 1.326 sum -4.495 -15.072 12.659 20.190 Atomic orbital electron populations 1.21745 0.93934 1.02015 1.02816 1.20190 0.96523 0.89175 1.03675 1.20978 1.01874 0.94703 0.87126 1.19284 1.13288 0.94918 0.93716 1.20088 1.00195 0.98660 0.90001 1.20651 1.01134 0.93116 0.99598 1.20175 0.90956 0.94692 0.94357 1.18438 0.97247 0.91132 0.92296 1.21101 0.95179 1.13564 1.24790 0.92356 1.24998 0.96011 0.97323 0.95987 1.69969 1.23739 1.30081 1.29599 0.86492 0.83130 0.80108 0.78077 1.19685 1.20979 1.20971 1.19695 1.07657 0.97390 0.90510 1.21046 0.97073 0.94732 0.90562 1.77685 1.28373 0.96698 1.12540 1.48272 1.46868 1.09985 1.05856 1.21893 1.03553 1.00533 0.78748 0.92857 0.91651 0.91785 0.89104 0.90855 0.86916 0.86153 0.95114 0.95058 0.92948 0.85928 0.90524 0.89569 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.89 16 2 C -0.06 -0.53 6.14 -27.88 -0.17 -0.70 16 3 C 0.09 1.29 6.23 -81.65 -0.51 0.78 16 4 C -0.20 -3.67 6.26 -105.19 -0.66 -4.33 16 5 C -0.07 -1.20 10.09 -39.41 -0.40 -1.60 16 6 C -0.13 -2.51 9.51 -39.97 -0.38 -2.89 16 7 C 0.00 0.06 5.03 -105.01 -0.53 -0.47 16 8 C 0.05 1.20 5.05 -29.03 -0.15 1.05 16 9 C -0.51 -14.49 9.09 -34.44 -0.31 -14.80 16 10 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.13 -2.94 9.65 -39.41 -0.38 -3.32 16 18 C 0.12 2.46 7.49 -83.05 -0.62 1.84 16 19 N -0.33 -6.35 12.54 33.26 0.42 -5.94 16 20 N -0.33 -5.01 3.95 -63.35 -0.25 -5.26 16 21 C 0.09 0.85 11.17 59.85 0.67 1.52 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.52 6.95 -51.93 -0.36 0.16 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.12 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.51 6.90 -51.93 -0.36 0.16 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -33.58 300.76 -7.66 -41.23 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -4.90 Total: -3.25 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.17 Total: -22.23 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.90 Total: -37.16 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.58 -7.66 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.281 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds