Wall clock time and date at job start Mon Mar 30 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47265 * 2 1 4 4 C 1.38247 * 126.04185 * 270.26081 * 3 2 1 5 5 C 1.41122 * 134.81655 * 359.30580 * 4 3 2 6 6 C 1.35652 * 119.53561 * 180.41671 * 5 4 3 7 7 C 1.39683 * 121.72737 * 0.25979 * 6 5 4 8 8 C 1.50704 * 119.09458 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47012 * 89.99373 * 8 7 6 10 10 H 1.07999 * 119.99839 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99679 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99862 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99901 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.46830 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47131 * 120.00002 * 13 11 9 16 16 H 1.48494 * 109.47211 * 240.00427 * 13 11 9 17 17 C 1.35640 * 121.81566 * 0.02562 * 7 6 5 18 18 C 1.41149 * 119.59528 * 359.97438 * 17 7 6 19 19 N 1.32062 * 134.68118 * 179.97438 * 18 17 7 20 20 N 1.33986 * 126.05013 * 90.01802 * 3 2 1 21 21 C 1.46500 * 125.02189 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47262 * 300.00107 * 1 2 3 23 23 H 1.08993 * 109.47272 * 60.00545 * 1 2 3 24 24 H 1.09003 * 109.46879 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47754 * 239.99312 * 2 1 3 26 26 H 1.09007 * 109.47476 * 119.99508 * 2 1 3 27 27 H 1.08002 * 120.23439 * 0.70104 * 5 4 3 28 28 H 1.08002 * 119.14103 * 180.23373 * 6 5 4 29 29 H 1.08995 * 109.47128 * 209.99500 * 8 7 6 30 30 H 1.09004 * 109.46653 * 329.99945 * 8 7 6 31 31 H 0.97003 * 119.99718 * 180.02562 * 12 11 9 32 32 H 1.08001 * 120.19851 * 180.02562 * 17 7 6 33 33 H 1.09005 * 109.47440 * 270.00146 * 21 20 3 34 34 H 1.09000 * 109.47121 * 29.99426 * 21 20 3 35 35 H 1.09000 * 109.47667 * 149.99564 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2987 2.1894 -1.1178 5 6 2.2294 1.9762 -2.5111 6 6 2.5828 2.9745 -3.3588 7 6 3.0217 4.2151 -2.8903 8 6 3.4000 5.2820 -3.8851 9 6 2.1867 6.1117 -4.2177 10 1 1.2368 5.8889 -3.7546 11 6 2.2897 7.1558 -5.1123 12 7 3.4466 7.4273 -5.6757 13 14 0.7859 8.1847 -5.5240 14 1 -0.3839 7.6787 -4.7618 15 1 1.0398 9.6011 -5.1575 16 1 0.5064 8.0925 -6.9795 17 6 3.1177 4.4856 -1.5646 18 6 2.7666 3.4939 -0.6236 19 7 2.7451 3.4314 0.6954 20 7 2.2955 2.1641 1.0833 21 6 2.1370 1.7161 2.4691 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 1.8930 1.0263 -2.8999 28 1 2.5238 2.8056 -4.4239 29 1 4.1712 5.9218 -3.4561 30 1 3.7800 4.8138 -4.7932 31 1 3.5191 8.1621 -6.3048 32 1 3.4599 5.4542 -1.2312 33 1 1.1289 1.9479 2.8129 34 1 2.3010 0.6399 2.5240 35 1 2.8630 2.2270 3.1015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:10 Heat of formation + Delta-G solvation = 55.412221 kcal Electronic energy + Delta-G solvation = -16802.371683 eV Core-core repulsion = 14186.406147 eV Total energy + Delta-G solvation = -2615.965536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28230 -38.73722 -35.35496 -35.13251 -33.53177 -32.38218 -30.11955 -29.17565 -27.55642 -25.10242 -24.60962 -23.05912 -21.94796 -20.17214 -18.50792 -17.95439 -17.52587 -16.72648 -16.56893 -15.89224 -15.29751 -15.14574 -14.72913 -14.54206 -14.16370 -13.84045 -13.64034 -13.56878 -13.23797 -13.08574 -12.77001 -12.53199 -12.47860 -12.17637 -12.12846 -11.91343 -11.55859 -11.39275 -11.06905 -10.93672 -10.60082 -9.27589 -8.44904 -8.18846 -6.32496 -0.21335 0.95612 1.39306 1.40064 1.50672 1.54403 1.55073 2.40713 3.02041 3.10971 3.28492 3.50848 3.96255 4.09909 4.21141 4.30608 4.37542 4.42259 4.49885 4.55330 4.62740 4.72004 4.80050 4.97335 5.03781 5.09529 5.25457 5.32901 5.38325 5.41442 5.59016 5.67040 5.76414 6.00208 6.11004 6.11905 6.22598 6.73513 6.79571 7.35461 8.90364 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.005109 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.915158 B = 5478.832502 C = 5615.505548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.056 4.056 3 C 0.126 3.874 4 C -0.238 4.238 5 C -0.028 4.028 6 C -0.168 4.168 7 C -0.008 4.008 8 C 0.055 3.945 9 C -0.527 4.527 10 H 0.051 0.949 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.271 1.271 17 C -0.157 4.157 18 C 0.091 3.909 19 N -0.367 5.367 20 N -0.325 5.325 21 C 0.078 3.922 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.160 0.840 28 H 0.124 0.876 29 H 0.000 1.000 30 H 0.014 0.986 31 H 0.266 0.734 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -19.496 13.977 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 C -0.014 4.014 4 C -0.248 4.248 5 C -0.048 4.048 6 C -0.187 4.187 7 C -0.012 4.012 8 C 0.018 3.982 9 C -0.565 4.565 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.196 1.196 17 C -0.178 4.178 18 C -0.060 4.060 19 N -0.196 5.196 20 N -0.099 5.099 21 C -0.061 4.061 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.129 0.871 27 H 0.177 0.823 28 H 0.142 0.858 29 H 0.018 0.982 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.715 -18.744 15.193 24.796 hybrid contribution -0.296 1.148 -1.130 1.638 sum -6.011 -17.597 14.063 23.314 Atomic orbital electron populations 1.21745 0.92885 1.03753 1.01944 1.20527 0.97093 0.85426 1.06437 1.21849 0.97723 0.96246 0.85535 1.19688 1.15332 0.94601 0.95169 1.20470 0.95823 0.99100 0.89427 1.20590 1.04747 0.93013 1.00372 1.19901 0.92461 0.95212 0.93613 1.18192 0.95920 0.91674 0.92424 1.21349 0.95470 1.14506 1.25147 0.93044 1.25914 0.99307 0.98430 0.95598 1.70088 1.25935 1.30793 1.30124 0.85372 0.79037 0.78177 0.78315 1.19223 1.20255 1.19585 1.19505 1.09634 0.97476 0.91223 1.20965 0.98058 0.95689 0.91255 1.77603 1.30425 0.99663 1.11891 1.48807 1.44303 1.08505 1.08257 1.22485 1.04946 1.03127 0.75573 0.92819 0.93583 0.88757 0.87476 0.87078 0.82293 0.85768 0.98204 0.96769 0.92494 0.88348 0.88529 0.85214 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 71.98 0.71 -0.98 16 2 C -0.06 -0.72 6.14 29.85 0.18 -0.53 16 3 C 0.13 3.18 6.23 42.23 0.26 3.45 16 4 C -0.24 -8.31 6.26 -20.23 -0.13 -8.44 16 5 C -0.03 -0.94 10.09 22.38 0.23 -0.72 16 6 C -0.17 -6.91 9.51 22.02 0.21 -6.70 16 7 C -0.01 -0.38 5.03 -20.12 -0.10 -0.48 16 8 C 0.05 3.13 5.05 29.10 0.15 3.28 16 9 C -0.53 -31.72 9.09 25.60 0.23 -31.49 16 10 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 11 C 0.01 0.33 5.46 84.66 0.46 0.79 16 12 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 13 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 C -0.16 -7.62 9.65 22.38 0.22 -7.41 16 18 C 0.09 3.93 7.49 42.16 0.32 4.24 16 19 N -0.37 -14.41 12.54 -48.70 -0.61 -15.02 16 20 N -0.33 -8.82 3.95 -354.33 -1.40 -10.22 16 21 C 0.08 1.07 11.17 127.77 1.43 2.49 16 22 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 24 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.11 0.70 6.95 -2.38 -0.02 0.68 16 27 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 28 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.00 -0.02 8.06 -2.39 -0.02 -0.04 16 30 H 0.01 0.83 8.07 -2.38 -0.02 0.81 16 31 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 33 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.13 0.70 6.90 -2.39 -0.02 0.68 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.35 300.76 5.54 -73.81 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.07 Total: 3.29 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 4.17 Total: -42.49 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.73 Total: -82.57 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -79.35 5.54 -73.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.225 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds