Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46867 * 2 1 4 4 C 1.50698 * 109.47197 * 239.99975 * 2 1 3 5 5 C 1.34238 * 126.49617 * 295.61594 * 4 2 1 6 6 N 1.36835 * 109.92904 * 180.15131 * 5 4 2 7 7 H 0.96993 * 125.06953 * 179.81605 * 6 5 4 8 8 C 1.37692 * 109.87138 * 359.54833 * 6 5 4 9 9 C 1.39126 * 133.50939 * 180.26280 * 8 6 5 10 10 C 1.37750 * 119.77526 * 179.97438 * 9 8 6 11 11 C 1.38828 * 120.67126 * 0.02755 * 10 9 8 12 12 C 1.36627 * 120.52517 * 359.97438 * 11 10 9 13 13 C 1.39629 * 119.76468 * 359.97438 * 12 11 10 14 14 C 1.52995 * 109.47107 * 119.99671 * 2 1 3 15 15 H 1.08996 * 109.47345 * 62.51263 * 14 2 1 16 16 N 1.46904 * 109.47408 * 302.51220 * 14 2 1 17 17 C 1.50701 * 109.47171 * 182.51313 * 14 2 1 18 18 H 1.07995 * 119.99876 * 0.02562 * 17 14 2 19 19 C 1.37882 * 119.99941 * 179.97438 * 17 14 2 20 20 N 1.31508 * 120.00156 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99781 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46776 * 120.00049 * 21 19 17 24 24 H 1.48499 * 109.46977 * 240.00333 * 21 19 17 25 25 H 1.08999 * 109.47149 * 60.00230 * 1 2 3 26 26 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47283 * 300.00208 * 1 2 3 28 28 H 1.08000 * 125.04197 * 359.97438 * 5 4 2 29 29 H 1.07995 * 120.11160 * 359.97438 * 9 8 6 30 30 H 1.07999 * 119.66222 * 180.02562 * 10 9 8 31 31 H 1.08004 * 119.73498 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.11531 * 179.97438 * 12 11 10 33 33 H 1.00899 * 110.99747 * 306.05419 * 16 14 2 34 34 H 1.00898 * 111.00116 * 70.00662 * 16 14 2 35 35 H 0.97001 * 120.00276 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.8586 -2.0072 -1.5305 6 7 2.4577 -2.2935 -2.7269 7 1 2.4686 -3.1662 -3.1501 8 6 3.0378 -1.1566 -3.2437 9 6 3.7535 -0.8903 -4.4067 10 6 4.2156 0.3846 -4.6487 11 6 3.9751 1.4089 -3.7430 12 6 3.2745 1.1695 -2.5947 13 6 2.7959 -0.1151 -2.3296 14 6 2.0400 -0.7212 1.2492 15 1 1.7139 -1.7610 1.2271 16 7 1.5014 -0.0646 2.4479 17 6 3.5457 -0.6674 1.2808 18 1 4.0849 -0.1684 0.4892 19 6 4.2348 -1.2544 2.3208 20 7 3.5781 -1.8608 3.2855 21 14 6.1013 -1.1884 2.3595 22 1 6.5954 -0.4536 1.1675 23 1 6.5463 -0.4887 3.5914 24 1 6.6457 -2.5700 2.3508 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.3274 -2.7199 -0.9170 29 1 3.9461 -1.6805 -5.1172 30 1 4.7706 0.5894 -5.5522 31 1 4.3448 2.4028 -3.9477 32 1 3.0916 1.9712 -1.8944 33 1 1.7064 0.9234 2.4420 34 1 0.5094 -0.2275 2.5346 35 1 4.0630 -2.2741 4.0170 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = 51.951373 kcal Electronic energy + Delta-G solvation = -17480.103398 eV Core-core repulsion = 14863.987789 eV Total energy + Delta-G solvation = -2616.115609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76908 -36.71367 -35.79909 -32.31000 -31.20372 -29.65723 -28.87139 -27.52743 -26.05186 -23.10903 -22.39486 -21.42177 -20.44120 -18.10975 -17.32410 -16.36763 -15.77324 -15.07105 -14.54704 -14.01625 -13.96741 -13.63784 -13.44624 -13.15641 -12.98877 -12.50952 -12.15314 -11.66198 -11.45241 -11.23576 -11.14872 -10.93995 -10.78648 -10.45255 -10.23083 -10.04850 -9.45573 -9.13840 -8.77946 -8.26779 -7.74322 -7.25084 -6.68404 -5.72537 -3.82667 1.57472 2.05121 3.34178 3.40450 3.48364 3.54222 3.62614 4.35574 4.60695 5.13232 5.29714 5.36437 5.52841 5.55786 5.71096 5.80833 5.89769 6.03203 6.10924 6.18272 6.28711 6.37405 6.42366 6.51619 6.69860 6.79571 6.89766 6.95871 7.06883 7.23769 7.40910 7.63530 7.69295 8.04275 8.09086 8.41684 8.80449 9.15588 9.34561 9.84528 11.32491 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.008710 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.328156 B = 3213.754379 C = 3851.185269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 H 0.061 0.939 4 C -0.106 4.106 5 C 0.041 3.959 6 N -0.599 5.599 7 H 0.409 0.591 8 C 0.094 3.906 9 C -0.138 4.138 10 C -0.108 4.108 11 C -0.160 4.160 12 C -0.062 4.062 13 C -0.097 4.097 14 C 0.235 3.765 15 H 0.033 0.967 16 N -0.814 5.814 17 C -0.515 4.515 18 H 0.052 0.948 19 C 0.081 3.919 20 N -0.854 5.854 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.288 1.288 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.164 0.836 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.313 0.687 34 H 0.296 0.704 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 1.877 -12.873 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 H 0.079 0.921 4 C -0.113 4.113 5 C -0.083 4.083 6 N -0.202 5.202 7 H 0.244 0.756 8 C -0.014 4.014 9 C -0.159 4.159 10 C -0.128 4.128 11 C -0.180 4.180 12 C -0.080 4.080 13 C -0.103 4.103 14 C 0.126 3.874 15 H 0.050 0.950 16 N -0.340 5.340 17 C -0.554 4.554 18 H 0.070 0.930 19 C -0.124 4.124 20 N -0.491 5.491 21 Si 0.701 3.299 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.215 1.215 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.181 0.819 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.364 1.147 -12.271 12.776 hybrid contribution 0.693 0.049 -0.747 1.020 sum -2.672 1.196 -13.019 13.344 Atomic orbital electron populations 1.21882 0.96887 1.00942 1.00218 1.20655 0.92801 0.99430 0.94718 0.92072 1.20116 1.02610 0.92975 0.95550 1.21436 1.01959 0.97141 0.87770 1.41629 1.49309 1.09443 1.19846 0.75554 1.18242 0.99875 0.87118 0.96178 1.19899 1.02604 0.97428 0.95928 1.20642 1.00514 0.92299 0.99312 1.20497 1.02914 0.98928 0.95652 1.20283 0.96221 0.95211 0.96323 1.19220 1.02449 0.93164 0.95428 1.19060 0.94548 0.92702 0.81126 0.94951 1.59187 1.15084 1.15045 1.44665 1.20974 0.90420 1.36610 1.07417 0.92974 1.24916 0.96777 0.95069 0.95612 1.70103 1.33931 1.34822 1.10197 0.86864 0.87806 0.77434 0.77768 1.19944 1.21249 1.21466 0.94003 0.93293 0.93184 0.81914 0.87025 0.86561 0.86735 0.86451 0.87564 0.89334 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.73 37.16 0.32 -2.03 16 2 C -0.05 -1.08 2.42 -91.78 -0.22 -1.31 16 3 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 4 C -0.11 -2.07 4.25 -102.71 -0.44 -2.51 16 5 C 0.04 0.72 11.13 -16.73 -0.19 0.54 16 6 N -0.60 -9.36 6.07 -10.65 -0.06 -9.43 16 7 H 0.41 4.85 8.96 -40.82 -0.37 4.49 16 8 C 0.09 1.61 7.28 -83.99 -0.61 1.00 16 9 C -0.14 -2.04 10.08 -39.43 -0.40 -2.44 16 10 C -0.11 -1.53 10.01 -39.54 -0.40 -1.93 16 11 C -0.16 -2.42 9.97 -39.95 -0.40 -2.82 16 12 C -0.06 -1.08 10.05 -39.64 -0.40 -1.48 16 13 C -0.10 -1.86 6.35 -105.14 -0.67 -2.53 16 14 C 0.24 5.63 2.13 -68.86 -0.15 5.48 16 15 H 0.03 0.85 7.82 -51.93 -0.41 0.45 16 16 N -0.81 -18.81 8.25 -5.65 -0.05 -18.85 16 17 C -0.52 -14.19 8.21 -34.44 -0.28 -14.47 16 18 H 0.05 1.49 7.52 -52.49 -0.39 1.09 16 19 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 20 N -0.85 -25.30 12.77 55.43 0.71 -24.59 16 21 Si 0.87 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.27 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.05 0.78 6.88 -51.93 -0.36 0.42 16 28 H 0.16 2.64 8.00 -52.49 -0.42 2.22 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 33 H 0.31 6.90 8.96 -39.29 -0.35 6.55 16 34 H 0.30 6.05 7.67 -39.29 -0.30 5.75 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -31.77 294.68 -8.59 -40.36 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.69 Total: 13.22 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -3.91 Total: -22.27 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.60 Total: -52.87 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.77 -8.59 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.308 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds