Wall clock time and date at job start Mon Mar 30 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46867 * 2 1 4 4 C 1.50698 * 109.47197 * 239.99975 * 2 1 3 5 5 C 1.34238 * 126.49617 * 295.61594 * 4 2 1 6 6 N 1.36835 * 109.92904 * 180.15131 * 5 4 2 7 7 H 0.96993 * 125.06953 * 179.81605 * 6 5 4 8 8 C 1.37692 * 109.87138 * 359.54833 * 6 5 4 9 9 C 1.39126 * 133.50939 * 180.26280 * 8 6 5 10 10 C 1.37750 * 119.77526 * 179.97438 * 9 8 6 11 11 C 1.38828 * 120.67126 * 0.02755 * 10 9 8 12 12 C 1.36627 * 120.52517 * 359.97438 * 11 10 9 13 13 C 1.39629 * 119.76468 * 359.97438 * 12 11 10 14 14 C 1.52995 * 109.47107 * 119.99671 * 2 1 3 15 15 H 1.08996 * 109.47345 * 62.51263 * 14 2 1 16 16 N 1.46904 * 109.47408 * 302.51220 * 14 2 1 17 17 C 1.50701 * 109.47171 * 182.51313 * 14 2 1 18 18 H 1.07995 * 119.99876 * 0.02562 * 17 14 2 19 19 C 1.37882 * 119.99941 * 179.97438 * 17 14 2 20 20 N 1.31508 * 120.00156 * 359.97438 * 19 17 14 21 21 Si 1.86806 * 119.99781 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47010 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46776 * 120.00049 * 21 19 17 24 24 H 1.48499 * 109.46977 * 240.00333 * 21 19 17 25 25 H 1.08999 * 109.47149 * 60.00230 * 1 2 3 26 26 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47283 * 300.00208 * 1 2 3 28 28 H 1.08000 * 125.04197 * 359.97438 * 5 4 2 29 29 H 1.07995 * 120.11160 * 359.97438 * 9 8 6 30 30 H 1.07999 * 119.66222 * 180.02562 * 10 9 8 31 31 H 1.08004 * 119.73498 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.11531 * 179.97438 * 12 11 10 33 33 H 1.00899 * 110.99747 * 306.05419 * 16 14 2 34 34 H 1.00898 * 111.00116 * 70.00662 * 16 14 2 35 35 H 0.97001 * 120.00276 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.8586 -2.0072 -1.5305 6 7 2.4577 -2.2935 -2.7269 7 1 2.4686 -3.1662 -3.1501 8 6 3.0378 -1.1566 -3.2437 9 6 3.7535 -0.8903 -4.4067 10 6 4.2156 0.3846 -4.6487 11 6 3.9751 1.4089 -3.7430 12 6 3.2745 1.1695 -2.5947 13 6 2.7959 -0.1151 -2.3296 14 6 2.0400 -0.7212 1.2492 15 1 1.7139 -1.7610 1.2271 16 7 1.5014 -0.0646 2.4479 17 6 3.5457 -0.6674 1.2808 18 1 4.0849 -0.1684 0.4892 19 6 4.2348 -1.2544 2.3208 20 7 3.5781 -1.8608 3.2855 21 14 6.1013 -1.1884 2.3595 22 1 6.5954 -0.4536 1.1675 23 1 6.5463 -0.4887 3.5914 24 1 6.6457 -2.5700 2.3508 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.3274 -2.7199 -0.9170 29 1 3.9461 -1.6805 -5.1172 30 1 4.7706 0.5894 -5.5522 31 1 4.3448 2.4028 -3.9477 32 1 3.0916 1.9712 -1.8944 33 1 1.7064 0.9234 2.4420 34 1 0.5094 -0.2275 2.5346 35 1 4.0630 -2.2741 4.0170 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:01 Heat of formation + Delta-G solvation = 31.580451 kcal Electronic energy + Delta-G solvation = -17480.986748 eV Core-core repulsion = 14863.987789 eV Total energy + Delta-G solvation = -2616.998959 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.04887 -38.12065 -37.31014 -34.24380 -32.78605 -31.14650 -30.11830 -28.91375 -28.00675 -24.84072 -23.62660 -22.74978 -22.04154 -19.54637 -18.66768 -18.38385 -17.10538 -16.54875 -16.25653 -15.90390 -15.36145 -14.96224 -14.72437 -14.62548 -14.45335 -14.27019 -13.59817 -13.29385 -13.12615 -12.77627 -12.58780 -12.45944 -12.39908 -12.26793 -11.83733 -11.51739 -11.32549 -10.89980 -10.45545 -10.36213 -8.99916 -8.83320 -8.24694 -7.87928 -6.04099 0.33724 0.82587 1.36897 1.40594 1.50571 1.98022 2.41667 2.49893 3.10189 3.35070 3.94611 4.01013 4.23684 4.30818 4.42621 4.50977 4.60148 4.64728 4.71606 4.73105 4.89175 5.01864 5.12392 5.17920 5.22502 5.37043 5.44499 5.65591 5.76750 5.79950 5.88958 5.97491 6.08297 6.37823 6.38669 6.80655 6.88900 7.26730 7.42786 7.65726 9.14156 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.008710 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.328156 B = 3213.754379 C = 3851.185269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.042 4.042 3 H 0.045 0.955 4 C -0.142 4.142 5 C 0.040 3.960 6 N -0.588 5.588 7 H 0.426 0.574 8 C 0.077 3.923 9 C -0.138 4.138 10 C -0.106 4.106 11 C -0.157 4.157 12 C -0.092 4.092 13 C -0.133 4.133 14 C 0.242 3.758 15 H 0.007 0.993 16 N -0.828 5.828 17 C -0.517 4.517 18 H 0.035 0.965 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 0.928 3.072 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.173 0.827 29 H 0.144 0.856 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.111 0.889 33 H 0.318 0.682 34 H 0.313 0.687 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 1.917 -14.795 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.063 4.063 3 H 0.064 0.936 4 C -0.149 4.149 5 C -0.085 4.085 6 N -0.192 5.192 7 H 0.265 0.735 8 C -0.031 4.031 9 C -0.158 4.158 10 C -0.125 4.125 11 C -0.176 4.176 12 C -0.111 4.111 13 C -0.138 4.138 14 C 0.133 3.867 15 H 0.025 0.975 16 N -0.355 5.355 17 C -0.556 4.556 18 H 0.053 0.947 19 C -0.167 4.167 20 N -0.521 5.521 21 Si 0.756 3.244 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.190 0.810 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.821 1.177 -14.218 14.543 hybrid contribution 0.539 0.072 -0.240 0.595 sum -2.282 1.249 -14.458 14.690 Atomic orbital electron populations 1.21780 0.94388 1.01579 1.01204 1.20342 0.94837 0.97844 0.93309 0.93626 1.20223 1.04494 0.94079 0.96117 1.21585 1.01670 0.96796 0.88444 1.41559 1.48443 1.10089 1.19108 0.73503 1.18588 1.00593 0.86979 0.96904 1.20347 1.01298 0.98774 0.95409 1.21135 0.99676 0.91568 1.00113 1.20878 1.01434 1.00641 0.94651 1.20459 0.97997 0.94862 0.97735 1.19517 1.03596 0.94536 0.96172 1.18797 0.92752 0.91896 0.83290 0.97534 1.58969 1.16447 1.15346 1.44731 1.21202 0.92527 1.35490 1.06427 0.94703 1.25519 1.00324 0.95232 0.95647 1.70202 1.35157 1.36005 1.10774 0.85998 0.83637 0.77356 0.77447 1.20322 1.20877 1.21049 0.92766 0.92797 0.92351 0.81035 0.83861 0.82769 0.84156 0.87100 0.87010 0.87520 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.73 71.98 0.63 -3.70 16 2 C -0.04 -1.69 2.42 -11.54 -0.03 -1.72 16 3 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.14 -5.65 4.25 -18.63 -0.08 -5.72 16 5 C 0.04 1.43 11.13 83.00 0.92 2.35 16 6 N -0.59 -17.73 6.07 -187.60 -1.14 -18.87 16 7 H 0.43 9.40 8.96 -92.71 -0.83 8.57 16 8 C 0.08 2.57 7.28 39.03 0.28 2.85 16 9 C -0.14 -3.69 10.08 22.37 0.23 -3.46 16 10 C -0.11 -2.63 10.01 22.30 0.22 -2.41 16 11 C -0.16 -4.42 9.97 22.03 0.22 -4.20 16 12 C -0.09 -3.22 10.05 22.23 0.22 -2.99 16 13 C -0.13 -5.11 6.35 -20.20 -0.13 -5.24 16 14 C 0.24 11.81 2.13 44.17 0.09 11.91 16 15 H 0.01 0.36 7.82 -2.39 -0.02 0.34 16 16 N -0.83 -38.54 8.25 -171.80 -1.42 -39.96 16 17 C -0.52 -29.02 8.21 25.60 0.21 -28.81 16 18 H 0.03 2.04 7.52 -2.91 -0.02 2.02 16 19 C 0.03 2.00 5.39 84.66 0.46 2.45 16 20 N -0.88 -52.85 12.77 21.45 0.27 -52.58 16 21 Si 0.93 46.00 29.54 68.60 2.03 48.03 16 22 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 24 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.69 8.10 -2.38 -0.02 1.67 16 27 H 0.06 1.78 6.88 -2.38 -0.02 1.76 16 28 H 0.17 5.58 8.00 -2.91 -0.02 5.55 16 29 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.11 3.83 8.06 -2.91 -0.02 3.80 16 33 H 0.32 14.16 8.96 -89.69 -0.80 13.36 16 34 H 0.31 12.74 7.67 -89.70 -0.69 12.05 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -68.31 294.68 1.79 -66.52 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -1.20 Total: 35.55 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.25 Total: -38.69 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -2.28 Total: -111.41 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -68.31 1.79 -66.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.103 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds