Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46914 * 2 1 4 4 C 1.50701 * 109.47170 * 119.99853 * 2 1 3 5 5 C 1.34241 * 126.50105 * 60.02680 * 4 2 1 6 6 N 1.36830 * 109.93178 * 179.97438 * 5 4 2 7 7 H 0.96993 * 125.06361 * 179.97438 * 6 5 4 8 8 C 1.37694 * 109.87033 * 359.97438 * 6 5 4 9 9 C 1.39133 * 133.50725 * 180.02562 * 8 6 5 10 10 C 1.37742 * 119.77580 * 179.97438 * 9 8 6 11 11 C 1.38835 * 120.67224 * 0.02562 * 10 9 8 12 12 C 1.36632 * 120.52334 * 359.97438 * 11 10 9 13 13 C 1.39626 * 119.76083 * 0.26109 * 12 11 10 14 14 C 1.52996 * 109.47093 * 240.00047 * 2 1 3 15 15 H 1.09007 * 109.47286 * 184.99942 * 14 2 1 16 16 N 1.46901 * 109.47434 * 304.99687 * 14 2 1 17 17 C 1.50697 * 109.47431 * 64.99779 * 14 2 1 18 18 H 1.07996 * 119.99580 * 0.02562 * 17 14 2 19 19 C 1.37876 * 120.00326 * 179.97438 * 17 14 2 20 20 N 1.31522 * 119.99834 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00212 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46739 * 60.00278 * 21 19 17 23 23 H 1.48499 * 109.47195 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47342 * 300.00322 * 21 19 17 25 25 H 1.08993 * 109.47154 * 299.99948 * 1 2 3 26 26 H 1.09000 * 109.47180 * 60.00371 * 1 2 3 27 27 H 1.09007 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.07998 * 125.03217 * 0.02562 * 5 4 2 29 29 H 1.07992 * 120.10896 * 359.97438 * 9 8 6 30 30 H 1.08005 * 119.66612 * 180.02562 * 10 9 8 31 31 H 1.07994 * 119.74119 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.11467 * 179.97438 * 12 11 10 33 33 H 1.00900 * 110.99887 * 60.00011 * 16 14 2 34 34 H 1.00897 * 111.00846 * 183.95112 * 16 14 2 35 35 H 0.96999 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7902 -1.9862 1.5707 6 7 2.4117 -2.2793 2.7540 7 1 2.3814 -3.1395 3.2012 8 6 3.0864 -1.1712 3.2154 9 6 3.8647 -0.9239 4.3418 10 6 4.4207 0.3223 4.5289 11 6 4.2123 1.3369 3.6044 12 6 3.4514 1.1158 2.4912 13 6 2.8742 -0.1386 2.2842 14 6 2.0400 -0.7212 -1.2492 15 1 3.1264 -0.7995 -1.2056 16 7 1.4543 -2.0670 -1.3111 17 6 1.6413 0.0570 -2.4766 18 1 1.0806 0.9745 -2.3756 19 6 1.9932 -0.4017 -3.7283 20 7 2.6764 -1.5188 -3.8511 21 14 1.4984 0.5625 -5.2497 22 1 2.0895 1.9234 -5.1870 23 1 1.9935 -0.1374 -6.4621 24 1 0.0183 0.6680 -5.3093 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.1940 -2.6788 0.9953 29 1 4.0324 -1.7064 5.0669 30 1 5.0250 0.5123 5.4037 31 1 4.6558 2.3082 3.7658 32 1 3.2933 1.9099 1.7765 33 1 0.4472 -2.0215 -1.3523 34 1 1.8249 -2.5872 -2.0922 35 1 2.9243 -1.8413 -4.7317 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = 44.227997 kcal Electronic energy + Delta-G solvation = -17295.715447 eV Core-core repulsion = 14679.264926 eV Total energy + Delta-G solvation = -2616.450520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74715 -36.71997 -35.79335 -32.56888 -30.99650 -29.46490 -28.81616 -27.54903 -25.85707 -23.62968 -22.37370 -21.29762 -20.38912 -18.00547 -17.07189 -16.38060 -15.81510 -15.04108 -14.87579 -14.24153 -13.96531 -13.56546 -13.35715 -13.03627 -12.52740 -12.42353 -12.06434 -11.70177 -11.31423 -11.25282 -11.03161 -10.97509 -10.79949 -10.45426 -10.28343 -9.83905 -9.63243 -9.46796 -8.93233 -8.48538 -7.74898 -7.09622 -6.99657 -5.98422 -4.13622 1.57128 2.02942 3.27947 3.33385 3.35299 3.40768 3.64694 4.32992 4.40153 5.12138 5.23910 5.32426 5.38247 5.62784 5.80258 5.81750 6.13839 6.20574 6.25383 6.34068 6.38822 6.49793 6.60703 6.65745 6.82892 6.97696 7.01322 7.18020 7.24339 7.29770 7.48732 7.71613 7.83124 7.87784 8.07444 8.26698 8.82166 9.06253 9.22286 9.57454 10.99098 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.005991 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.889535 B = 4672.208288 C = 4959.677126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.008 4.008 3 H 0.060 0.940 4 C -0.139 4.139 5 C 0.067 3.933 6 N -0.604 5.604 7 H 0.408 0.592 8 C 0.088 3.912 9 C -0.137 4.137 10 C -0.111 4.111 11 C -0.159 4.159 12 C -0.067 4.067 13 C -0.102 4.102 14 C 0.222 3.778 15 H 0.034 0.966 16 N -0.851 5.851 17 C -0.544 4.544 18 H 0.054 0.946 19 C 0.064 3.936 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.180 0.820 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.309 0.691 34 H 0.351 0.649 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 -0.050 13.028 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.028 4.028 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.057 4.057 6 N -0.207 5.207 7 H 0.244 0.756 8 C -0.019 4.019 9 C -0.158 4.158 10 C -0.131 4.131 11 C -0.179 4.179 12 C -0.085 4.085 13 C -0.107 4.107 14 C 0.112 3.888 15 H 0.052 0.948 16 N -0.381 5.381 17 C -0.584 4.584 18 H 0.072 0.928 19 C -0.137 4.137 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.166 0.834 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.156 -0.416 13.616 13.623 hybrid contribution -0.459 0.407 -1.731 1.837 sum -0.616 -0.009 11.884 11.900 Atomic orbital electron populations 1.21703 0.96045 1.01022 0.99939 1.19622 0.94332 0.97567 0.91250 0.92206 1.20484 1.03056 0.94002 0.96948 1.21947 0.99839 0.97587 0.86313 1.41852 1.45705 1.11541 1.21603 0.75649 1.18270 0.98863 0.88006 0.96801 1.19907 1.01435 0.97867 0.96559 1.20641 1.00438 0.92659 0.99315 1.20504 1.02433 0.99105 0.95835 1.20317 0.95865 0.95461 0.96870 1.19339 1.01764 0.93592 0.95997 1.18841 0.94965 0.86051 0.88948 0.94761 1.59524 1.08824 1.18657 1.51091 1.21966 1.35353 1.09127 0.91921 0.92752 1.25010 0.94567 0.95130 0.99034 1.69744 1.38788 1.21205 1.23794 0.86682 0.78784 0.80254 0.82372 1.20312 1.21410 1.20382 0.95024 0.92317 0.92962 0.80341 0.87077 0.86596 0.86739 0.86337 0.88196 0.83382 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.42 37.16 0.31 -2.12 16 2 C -0.01 -0.17 2.58 -91.77 -0.24 -0.40 16 3 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.14 -2.71 5.05 -102.71 -0.52 -3.23 16 5 C 0.07 1.17 10.58 -16.73 -0.18 0.99 16 6 N -0.60 -9.13 6.07 -10.65 -0.06 -9.20 16 7 H 0.41 4.67 8.96 -40.82 -0.37 4.31 16 8 C 0.09 1.47 7.28 -83.98 -0.61 0.86 16 9 C -0.14 -1.95 10.08 -39.43 -0.40 -2.35 16 10 C -0.11 -1.51 10.01 -39.54 -0.40 -1.90 16 11 C -0.16 -2.31 9.97 -39.94 -0.40 -2.71 16 12 C -0.07 -1.13 10.05 -39.64 -0.40 -1.53 16 13 C -0.10 -1.89 6.35 -105.14 -0.67 -2.56 16 14 C 0.22 5.40 2.46 -68.87 -0.17 5.23 16 15 H 0.03 0.97 8.14 -51.92 -0.42 0.55 16 16 N -0.85 -19.06 7.09 -5.65 -0.04 -19.10 16 17 C -0.54 -14.36 8.02 -34.44 -0.28 -14.64 16 18 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 19 C 0.06 1.73 5.38 -17.82 -0.10 1.63 16 20 N -0.90 -24.85 11.54 55.43 0.64 -24.21 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.15 6.95 -51.93 -0.36 0.79 16 27 H 0.05 0.93 6.49 -51.92 -0.34 0.59 16 28 H 0.18 2.99 7.02 -52.49 -0.37 2.62 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.31 6.57 7.03 -39.29 -0.28 6.29 16 34 H 0.35 8.70 7.08 -39.29 -0.28 8.42 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -28.51 287.35 -8.64 -37.15 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -4.45 Total: 17.79 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -4.03 Total: -22.72 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.53 Total: -52.50 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.51 -8.64 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.376 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds