Wall clock time and date at job start Mon Mar 30 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.46914 * 2 1 4 4 C 1.50701 * 109.47170 * 119.99853 * 2 1 3 5 5 C 1.34241 * 126.50105 * 60.02680 * 4 2 1 6 6 N 1.36830 * 109.93178 * 179.97438 * 5 4 2 7 7 H 0.96993 * 125.06361 * 179.97438 * 6 5 4 8 8 C 1.37694 * 109.87033 * 359.97438 * 6 5 4 9 9 C 1.39133 * 133.50725 * 180.02562 * 8 6 5 10 10 C 1.37742 * 119.77580 * 179.97438 * 9 8 6 11 11 C 1.38835 * 120.67224 * 0.02562 * 10 9 8 12 12 C 1.36632 * 120.52334 * 359.97438 * 11 10 9 13 13 C 1.39626 * 119.76083 * 0.26109 * 12 11 10 14 14 C 1.52996 * 109.47093 * 240.00047 * 2 1 3 15 15 H 1.09007 * 109.47286 * 184.99942 * 14 2 1 16 16 N 1.46901 * 109.47434 * 304.99687 * 14 2 1 17 17 C 1.50697 * 109.47431 * 64.99779 * 14 2 1 18 18 H 1.07996 * 119.99580 * 0.02562 * 17 14 2 19 19 C 1.37876 * 120.00326 * 179.97438 * 17 14 2 20 20 N 1.31522 * 119.99834 * 0.02562 * 19 17 14 21 21 Si 1.86798 * 120.00212 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46739 * 60.00278 * 21 19 17 23 23 H 1.48499 * 109.47195 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47342 * 300.00322 * 21 19 17 25 25 H 1.08993 * 109.47154 * 299.99948 * 1 2 3 26 26 H 1.09000 * 109.47180 * 60.00371 * 1 2 3 27 27 H 1.09007 * 109.46884 * 180.02562 * 1 2 3 28 28 H 1.07998 * 125.03217 * 0.02562 * 5 4 2 29 29 H 1.07992 * 120.10896 * 359.97438 * 9 8 6 30 30 H 1.08005 * 119.66612 * 180.02562 * 10 9 8 31 31 H 1.07994 * 119.74119 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.11467 * 179.97438 * 12 11 10 33 33 H 1.00900 * 110.99887 * 60.00011 * 16 14 2 34 34 H 1.00897 * 111.00846 * 183.95112 * 16 14 2 35 35 H 0.96999 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7902 -1.9862 1.5707 6 7 2.4117 -2.2793 2.7540 7 1 2.3814 -3.1395 3.2012 8 6 3.0864 -1.1712 3.2154 9 6 3.8647 -0.9239 4.3418 10 6 4.4207 0.3223 4.5289 11 6 4.2123 1.3369 3.6044 12 6 3.4514 1.1158 2.4912 13 6 2.8742 -0.1386 2.2842 14 6 2.0400 -0.7212 -1.2492 15 1 3.1264 -0.7995 -1.2056 16 7 1.4543 -2.0670 -1.3111 17 6 1.6413 0.0570 -2.4766 18 1 1.0806 0.9745 -2.3756 19 6 1.9932 -0.4017 -3.7283 20 7 2.6764 -1.5188 -3.8511 21 14 1.4984 0.5625 -5.2497 22 1 2.0895 1.9234 -5.1870 23 1 1.9935 -0.1374 -6.4621 24 1 0.0183 0.6680 -5.3093 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.1940 -2.6788 0.9953 29 1 4.0324 -1.7064 5.0669 30 1 5.0250 0.5123 5.4037 31 1 4.6558 2.3082 3.7658 32 1 3.2933 1.9099 1.7765 33 1 0.4472 -2.0215 -1.3523 34 1 1.8249 -2.5872 -2.0922 35 1 2.9243 -1.8413 -4.7317 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:06 Heat of formation + Delta-G solvation = 27.174825 kcal Electronic energy + Delta-G solvation = -17296.454928 eV Core-core repulsion = 14679.264926 eV Total energy + Delta-G solvation = -2617.190001 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.01125 -38.16033 -37.31400 -34.42028 -32.49385 -31.04732 -30.06783 -28.94347 -27.80146 -25.37909 -23.57667 -22.52266 -22.05024 -19.40499 -18.59473 -18.23111 -17.21359 -16.66598 -16.17924 -16.09838 -15.27099 -14.83617 -14.75321 -14.54831 -14.28384 -14.13340 -13.55148 -13.17163 -12.88281 -12.86407 -12.56209 -12.46071 -12.39892 -12.21185 -11.84979 -11.54624 -11.39576 -11.13463 -10.58940 -10.27168 -9.05865 -8.95399 -8.33393 -8.01071 -6.27070 0.36719 0.83858 1.40163 1.41173 1.48546 2.03257 2.41412 2.46376 3.11422 3.14176 3.97801 4.09904 4.29911 4.37503 4.50362 4.59725 4.66021 4.69872 4.76836 4.86788 5.00126 5.15988 5.18280 5.23724 5.40515 5.46936 5.55680 5.72129 5.75472 5.82799 5.88794 6.00593 6.12762 6.24693 6.42522 6.78772 6.93928 7.07640 7.25534 7.49791 8.90742 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.005991 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.889535 B = 4672.208288 C = 4959.677126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.001 3.999 3 H 0.040 0.960 4 C -0.175 4.175 5 C 0.074 3.926 6 N -0.591 5.591 7 H 0.426 0.574 8 C 0.075 3.925 9 C -0.135 4.135 10 C -0.108 4.108 11 C -0.154 4.154 12 C -0.097 4.097 13 C -0.137 4.137 14 C 0.230 3.770 15 H -0.015 1.015 16 N -0.832 5.832 17 C -0.558 4.558 18 H 0.051 0.949 19 C 0.019 3.981 20 N -0.919 5.919 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.270 1.270 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.184 0.816 29 H 0.144 0.856 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.317 0.683 34 H 0.338 0.662 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -0.141 14.766 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.019 4.019 3 H 0.059 0.941 4 C -0.182 4.182 5 C -0.051 4.051 6 N -0.195 5.195 7 H 0.265 0.735 8 C -0.032 4.032 9 C -0.156 4.156 10 C -0.127 4.127 11 C -0.173 4.173 12 C -0.116 4.116 13 C -0.142 4.142 14 C 0.119 3.881 15 H 0.003 0.997 16 N -0.361 5.361 17 C -0.598 4.598 18 H 0.069 0.931 19 C -0.181 4.181 20 N -0.560 5.560 21 Si 0.779 3.221 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.195 1.195 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.201 0.799 29 H 0.162 0.838 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.182 -0.517 15.388 15.398 hybrid contribution -0.376 0.457 -2.182 2.261 sum -0.557 -0.060 13.206 13.218 Atomic orbital electron populations 1.21598 0.94372 1.01624 1.00072 1.19365 0.95638 0.96188 0.90708 0.94102 1.20412 1.05245 0.95245 0.97277 1.21923 0.99422 0.96842 0.86943 1.41742 1.44792 1.12188 1.20790 0.73478 1.18579 0.99551 0.87719 0.97382 1.20356 1.00024 0.99130 0.96046 1.21136 0.99751 0.91852 0.99924 1.20875 1.00957 1.00707 0.94767 1.20474 0.97657 0.95153 0.98294 1.19594 1.02792 0.95073 0.96726 1.18637 0.92196 0.86982 0.90247 0.99733 1.59437 1.09197 1.17351 1.50093 1.22260 1.35278 1.09221 0.93026 0.93074 1.25717 0.94607 0.96013 1.01714 1.69863 1.39495 1.22308 1.24287 0.85708 0.78717 0.78726 0.78992 1.20350 1.21161 1.19529 0.93390 0.93531 0.92046 0.79882 0.83784 0.82756 0.84179 0.87210 0.87216 0.84835 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 8.42 71.98 0.61 -3.89 16 2 C 0.00 0.04 2.58 -11.54 -0.03 0.01 16 3 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.18 -6.99 5.05 -18.62 -0.09 -7.08 16 5 C 0.07 2.58 10.58 83.00 0.88 3.46 16 6 N -0.59 -17.05 6.07 -187.60 -1.14 -18.19 16 7 H 0.43 8.84 8.96 -92.71 -0.83 8.01 16 8 C 0.08 2.40 7.28 39.03 0.28 2.68 16 9 C -0.13 -3.42 10.08 22.37 0.23 -3.19 16 10 C -0.11 -2.53 10.01 22.30 0.22 -2.31 16 11 C -0.15 -4.16 9.97 22.04 0.22 -3.94 16 12 C -0.10 -3.32 10.05 22.23 0.22 -3.10 16 13 C -0.14 -5.15 6.35 -20.20 -0.13 -5.27 16 14 C 0.23 11.62 2.46 44.17 0.11 11.73 16 15 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 16 N -0.83 -38.04 7.09 -171.80 -1.22 -39.26 16 17 C -0.56 -30.22 8.02 25.60 0.21 -30.01 16 18 H 0.05 2.75 7.06 -2.91 -0.02 2.73 16 19 C 0.02 1.02 5.38 84.65 0.46 1.48 16 20 N -0.92 -51.92 11.54 21.45 0.25 -51.67 16 21 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.83 6.95 -2.39 -0.02 1.82 16 27 H 0.06 2.16 6.49 -2.38 -0.02 2.15 16 28 H 0.18 6.04 7.02 -2.91 -0.02 6.02 16 29 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 32 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.32 13.57 7.03 -89.69 -0.63 12.94 16 34 H 0.34 17.15 7.08 -89.70 -0.63 16.52 16 35 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -62.60 287.35 2.12 -60.48 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.97 Total: 42.71 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 3.18 Total: -39.45 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -2.11 Total: -109.12 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.60 2.12 -60.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.653 kcal (2) G-P(sol) polarization free energy of solvation -62.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds