Wall clock time and date at job start Mon Mar 30 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37892 * 120.15864 * 2 1 4 4 C 1.38735 * 120.45011 * 179.97438 * 3 2 1 5 5 C 1.36632 * 120.67217 * 0.03835 * 4 3 2 6 6 C 1.39700 * 119.88626 * 359.95817 * 5 4 3 7 7 N 1.35792 * 133.61096 * 180.34677 * 6 5 4 8 8 C 1.30109 * 109.64953 * 180.12265 * 7 6 5 9 9 C 1.50699 * 124.94717 * 179.83344 * 8 7 6 10 10 C 1.52997 * 109.47078 * 224.69960 * 9 8 7 11 11 C 1.52992 * 109.46956 * 104.69648 * 9 8 7 12 12 C 1.50706 * 109.46817 * 344.69888 * 9 8 7 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47363 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 N 1.36042 * 110.10468 * 359.56809 * 8 7 6 21 21 H 0.96998 * 126.34280 * 180.23826 * 20 8 7 22 22 C 1.38055 * 107.30202 * 0.26543 * 20 8 7 23 23 H 1.09004 * 109.47121 * 269.98412 * 1 2 3 24 24 H 1.09000 * 109.46566 * 29.98111 * 1 2 3 25 25 H 1.08994 * 109.46896 * 149.97912 * 1 2 3 26 26 H 1.07995 * 119.77299 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.66128 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.05893 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47153 * 299.99793 * 10 9 8 30 30 H 1.09001 * 109.46832 * 179.97438 * 10 9 8 31 31 H 1.09004 * 109.47261 * 59.99965 * 10 9 8 32 32 H 1.09001 * 109.47066 * 180.02562 * 11 9 8 33 33 H 1.08996 * 109.47747 * 299.99900 * 11 9 8 34 34 H 1.09002 * 109.47103 * 60.00312 * 11 9 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1923 0.0000 4 6 3.5872 1.1993 0.0005 5 6 4.2901 0.0277 0.0003 6 6 3.6096 -1.1923 0.0004 7 7 4.0121 -2.4893 0.0061 8 6 2.9715 -3.2703 0.0005 9 6 3.0225 -4.7764 0.0007 10 6 2.0205 -5.3207 -1.0194 11 6 2.6666 -5.2985 1.3940 12 6 4.4113 -5.2319 -0.3669 13 1 5.1798 -4.5036 -0.5798 14 6 4.7005 -6.5785 -0.4314 15 7 3.7645 -7.4653 -0.1727 16 14 6.4220 -7.1431 -0.8864 17 1 7.2838 -5.9582 -1.1287 18 1 6.9886 -7.9488 0.2249 19 1 6.3622 -7.9712 -2.1177 20 7 1.8306 -2.5292 0.0004 21 1 0.9229 -2.8713 0.0000 22 6 2.2043 -1.2002 0.0003 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3632 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6587 2.1269 0.0004 27 1 4.1169 2.1406 0.0009 28 1 5.3700 0.0448 0.0011 29 1 1.0161 -4.9912 -0.7535 30 1 2.0578 -6.4101 -1.0196 31 1 2.2741 -4.9487 -2.0121 32 1 2.7040 -6.3879 1.3942 33 1 3.3805 -4.9108 2.1207 34 1 1.6622 -4.9690 1.6598 35 1 3.9679 -8.4126 -0.2185 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260664402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:01 Heat of formation + Delta-G solvation = 55.054302 kcal Electronic energy + Delta-G solvation = -17435.661249 eV Core-core repulsion = 14819.680192 eV Total energy + Delta-G solvation = -2615.981056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.55327 -37.39227 -35.09593 -33.37020 -31.26809 -30.73338 -28.28411 -26.56138 -25.87833 -25.16722 -22.53481 -21.79864 -20.27563 -19.07931 -17.38317 -16.26066 -15.81340 -15.04048 -14.72950 -14.46931 -14.00937 -13.23913 -13.20111 -13.17860 -12.69058 -12.32254 -11.98552 -11.55190 -11.37073 -11.29924 -11.06087 -10.96132 -10.64919 -10.62730 -10.30270 -10.02396 -9.89623 -9.79398 -9.23958 -8.76612 -8.40545 -7.80606 -7.48139 -6.03415 -4.08553 1.41580 1.95130 3.31894 3.39955 3.46332 3.51738 3.56625 4.34884 4.45191 4.84520 5.04536 5.12998 5.26318 5.41555 5.48445 5.60429 5.71099 5.85535 5.98876 6.11422 6.17154 6.43029 6.50579 6.58872 6.66848 6.73578 6.83942 6.88905 7.04129 7.09481 7.34334 7.37811 7.60392 7.81784 7.99773 8.10576 8.28502 8.80493 9.01263 9.56711 11.00525 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.006682 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.147546 B = 4189.381409 C = 4787.722944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.133 4.133 5 C -0.077 4.077 6 C 0.055 3.945 7 N -0.491 5.491 8 C 0.343 3.657 9 C 0.132 3.868 10 C -0.134 4.134 11 C -0.129 4.129 12 C -0.488 4.488 13 H 0.079 0.921 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.286 1.286 20 N -0.606 5.606 21 H 0.415 0.585 22 C 0.032 3.968 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.123 0.877 29 H 0.007 0.993 30 H 0.100 0.900 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.349 11.365 0.584 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.082 4.082 3 C -0.146 4.146 4 C -0.153 4.153 5 C -0.097 4.097 6 C -0.065 4.065 7 N -0.209 5.209 8 C 0.077 3.923 9 C 0.129 3.871 10 C -0.192 4.192 11 C -0.188 4.188 12 C -0.526 4.526 13 H 0.097 0.903 14 C -0.140 4.140 15 N -0.535 5.535 16 Si 0.728 3.272 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.212 1.212 20 N -0.216 5.216 21 H 0.253 0.747 22 C -0.079 4.079 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.026 0.974 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.449 10.956 0.594 12.250 hybrid contribution -0.434 -0.196 -0.234 0.530 sum -5.882 10.759 0.360 12.268 Atomic orbital electron populations 1.20693 0.91748 1.02303 1.01896 1.18717 0.94959 0.90115 1.04398 1.20557 0.94081 0.95976 1.03936 1.20455 0.93915 0.97289 1.03655 1.19944 0.99594 0.89325 1.00799 1.19418 0.89991 0.93285 1.03774 1.70698 1.28406 0.98370 1.23452 1.24995 0.78703 0.97327 0.91261 1.17149 0.97988 0.77792 0.94124 1.21910 0.93979 1.05665 0.97695 1.21855 0.95889 1.05226 0.95791 1.21140 0.94125 0.91981 1.45393 0.90311 1.24899 0.97437 0.96511 0.95150 1.69781 1.32376 1.01275 1.50114 0.86385 0.84353 0.78624 0.77847 1.19513 1.21080 1.21178 1.43357 1.10314 1.04463 1.63458 0.74703 1.18752 0.95914 0.85119 1.08072 0.91535 0.91411 0.92477 0.86197 0.86163 0.85950 0.97359 0.88155 0.94828 0.88299 0.94651 0.97273 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.02 36.01 0.36 -0.90 16 2 C -0.08 -1.20 5.89 -104.54 -0.62 -1.81 16 3 C -0.13 -1.72 9.69 -39.52 -0.38 -2.10 16 4 C -0.13 -1.88 9.96 -39.98 -0.40 -2.28 16 5 C -0.08 -1.34 10.05 -39.62 -0.40 -1.74 16 6 C 0.05 1.15 7.23 -84.70 -0.61 0.54 16 7 N -0.49 -11.80 10.06 -8.23 -0.08 -11.89 16 8 C 0.34 7.79 6.39 -154.82 -0.99 6.80 16 9 C 0.13 3.15 0.72 -156.82 -0.11 3.04 16 10 C -0.13 -3.00 8.11 37.16 0.30 -2.70 16 11 C -0.13 -2.97 8.23 37.15 0.31 -2.67 16 12 C -0.49 -13.15 7.88 -34.44 -0.27 -13.42 16 13 H 0.08 2.25 6.97 -52.49 -0.37 1.88 16 14 C 0.06 1.59 5.15 -17.82 -0.09 1.50 16 15 N -0.90 -23.65 9.35 55.43 0.52 -23.14 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 N -0.61 -11.45 6.04 -8.00 -0.05 -11.50 16 21 H 0.42 6.60 8.43 -40.82 -0.34 6.25 16 22 C 0.03 0.60 6.98 -83.99 -0.59 0.01 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 29 H 0.01 0.14 7.59 -51.93 -0.39 -0.25 16 30 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 288.96 15.07 4.35 4.35 Total: -1.00 -29.00 288.96 -8.44 -37.44 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.67 Total: 4.26 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.49 Total: -15.73 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.39 Total: -46.53 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.00 -8.44 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.492 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds