Wall clock time and date at job start Mon Mar 30 2020 05:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37892 * 120.15864 * 2 1 4 4 C 1.38735 * 120.45011 * 179.97438 * 3 2 1 5 5 C 1.36632 * 120.67217 * 0.03835 * 4 3 2 6 6 C 1.39700 * 119.88626 * 359.95817 * 5 4 3 7 7 N 1.35792 * 133.61096 * 180.34677 * 6 5 4 8 8 C 1.30109 * 109.64953 * 180.12265 * 7 6 5 9 9 C 1.50699 * 124.94717 * 179.83344 * 8 7 6 10 10 C 1.52997 * 109.47078 * 224.69960 * 9 8 7 11 11 C 1.52992 * 109.46956 * 104.69648 * 9 8 7 12 12 C 1.50706 * 109.46817 * 344.69888 * 9 8 7 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47363 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 N 1.36042 * 110.10468 * 359.56809 * 8 7 6 21 21 H 0.96998 * 126.34280 * 180.23826 * 20 8 7 22 22 C 1.38055 * 107.30202 * 0.26543 * 20 8 7 23 23 H 1.09004 * 109.47121 * 269.98412 * 1 2 3 24 24 H 1.09000 * 109.46566 * 29.98111 * 1 2 3 25 25 H 1.08994 * 109.46896 * 149.97912 * 1 2 3 26 26 H 1.07995 * 119.77299 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.66128 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.05893 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47153 * 299.99793 * 10 9 8 30 30 H 1.09001 * 109.46832 * 179.97438 * 10 9 8 31 31 H 1.09004 * 109.47261 * 59.99965 * 10 9 8 32 32 H 1.09001 * 109.47066 * 180.02562 * 11 9 8 33 33 H 1.08996 * 109.47747 * 299.99900 * 11 9 8 34 34 H 1.09002 * 109.47103 * 60.00312 * 11 9 8 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1923 0.0000 4 6 3.5872 1.1993 0.0005 5 6 4.2901 0.0277 0.0003 6 6 3.6096 -1.1923 0.0004 7 7 4.0121 -2.4893 0.0061 8 6 2.9715 -3.2703 0.0005 9 6 3.0225 -4.7764 0.0007 10 6 2.0205 -5.3207 -1.0194 11 6 2.6666 -5.2985 1.3940 12 6 4.4113 -5.2319 -0.3669 13 1 5.1798 -4.5036 -0.5798 14 6 4.7005 -6.5785 -0.4314 15 7 3.7645 -7.4653 -0.1727 16 14 6.4220 -7.1431 -0.8864 17 1 7.2838 -5.9582 -1.1287 18 1 6.9886 -7.9488 0.2249 19 1 6.3622 -7.9712 -2.1177 20 7 1.8306 -2.5292 0.0004 21 1 0.9229 -2.8713 0.0000 22 6 2.2043 -1.2002 0.0003 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3632 0.8902 -0.5136 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6587 2.1269 0.0004 27 1 4.1169 2.1406 0.0009 28 1 5.3700 0.0448 0.0011 29 1 1.0161 -4.9912 -0.7535 30 1 2.0578 -6.4101 -1.0196 31 1 2.2741 -4.9487 -2.0121 32 1 2.7040 -6.3879 1.3942 33 1 3.3805 -4.9108 2.1207 34 1 1.6622 -4.9690 1.6598 35 1 3.9679 -8.4126 -0.2185 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260664402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:00 Heat of formation + Delta-G solvation = 38.836184 kcal Electronic energy + Delta-G solvation = -17436.364519 eV Core-core repulsion = 14819.680192 eV Total energy + Delta-G solvation = -2616.684327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00437 -38.74943 -36.85125 -34.67801 -33.18989 -32.08517 -29.67239 -27.74515 -27.60884 -27.16629 -24.12871 -23.09551 -21.65786 -20.78644 -18.81457 -17.88226 -17.44538 -16.82085 -16.18662 -15.92483 -15.29733 -14.93206 -14.62946 -14.31281 -14.23552 -13.64533 -13.33370 -13.24125 -13.02270 -12.70105 -12.58621 -12.54693 -12.31997 -12.27698 -12.12607 -11.79503 -11.79080 -11.30814 -10.95051 -10.54554 -10.41400 -9.13004 -8.85319 -8.05370 -6.15757 0.11908 0.68394 1.41318 1.44761 1.56881 2.02597 2.11246 2.49714 3.00330 3.20560 3.48576 3.80414 4.10801 4.22490 4.42889 4.47064 4.52977 4.66102 4.77823 4.79045 4.84945 4.90786 4.94278 4.98877 5.04476 5.22617 5.31659 5.47963 5.61026 5.63612 5.65429 5.77560 5.95319 6.02877 6.15054 6.34307 6.63120 6.88219 7.26582 7.51243 8.96336 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.006682 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.147546 B = 4189.381409 C = 4787.722944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.084 4.084 3 C -0.113 4.113 4 C -0.117 4.117 5 C -0.102 4.102 6 C 0.007 3.993 7 N -0.536 5.536 8 C 0.319 3.681 9 C 0.127 3.873 10 C -0.122 4.122 11 C -0.117 4.117 12 C -0.509 4.509 13 H 0.051 0.949 14 C 0.027 3.973 15 N -0.904 5.904 16 Si 0.948 3.052 17 H -0.282 1.282 18 H -0.278 1.278 19 H -0.277 1.277 20 N -0.593 5.593 21 H 0.427 0.573 22 C 0.022 3.978 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.166 0.834 27 H 0.160 0.840 28 H 0.121 0.879 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.036 0.964 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 13.790 0.578 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.137 4.137 5 C -0.122 4.122 6 C -0.112 4.112 7 N -0.256 5.256 8 C 0.052 3.948 9 C 0.124 3.876 10 C -0.180 4.180 11 C -0.176 4.176 12 C -0.547 4.547 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.543 5.543 16 Si 0.775 3.225 17 H -0.208 1.208 18 H -0.204 1.204 19 H -0.203 1.203 20 N -0.204 5.204 21 H 0.267 0.733 22 C -0.088 4.088 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.183 0.817 27 H 0.177 0.823 28 H 0.139 0.861 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.252 13.382 0.590 15.232 hybrid contribution 0.115 -0.750 -0.224 0.791 sum -7.137 12.632 0.366 14.513 Atomic orbital electron populations 1.20770 0.88836 1.03685 1.03126 1.19266 0.97164 0.89055 1.03164 1.21166 0.93992 0.97176 1.00902 1.20940 0.94606 0.97452 1.00670 1.20221 1.00048 0.89554 1.02381 1.19896 0.91892 0.93024 1.06364 1.70526 1.30150 1.00496 1.24395 1.24482 0.79919 0.96759 0.93625 1.17042 0.96737 0.79212 0.94560 1.21721 0.95461 1.04086 0.96769 1.21681 0.96964 1.03775 0.95176 1.21217 0.95430 0.91877 1.46202 0.93075 1.25414 1.00079 0.96519 0.95222 1.69856 1.33136 1.01345 1.50005 0.85649 0.81126 0.77726 0.77966 1.20772 1.20406 1.20299 1.43102 1.09932 1.04472 1.62934 0.73258 1.19129 0.95404 0.85809 1.08474 0.90234 0.88665 0.92566 0.81694 0.82284 0.86060 0.94011 0.90132 0.95931 0.90078 0.96379 0.94480 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.02 71.24 0.71 -1.29 16 2 C -0.08 -2.25 5.89 -19.81 -0.12 -2.37 16 3 C -0.11 -2.56 9.69 22.31 0.22 -2.35 16 4 C -0.12 -2.92 9.96 22.01 0.22 -2.70 16 5 C -0.10 -3.52 10.05 22.25 0.22 -3.30 16 6 C 0.01 0.28 7.23 39.45 0.29 0.57 16 7 N -0.54 -26.96 10.06 -179.96 -1.81 -28.77 16 8 C 0.32 14.90 6.39 137.92 0.88 15.78 16 9 C 0.13 6.23 0.72 -53.68 -0.04 6.19 16 10 C -0.12 -5.50 8.11 71.98 0.58 -4.92 16 11 C -0.12 -5.50 8.23 71.98 0.59 -4.91 16 12 C -0.51 -28.57 7.88 25.60 0.20 -28.37 16 13 H 0.05 3.10 6.97 -2.91 -0.02 3.08 16 14 C 0.03 1.44 5.15 84.66 0.44 1.88 16 15 N -0.90 -48.48 9.35 21.45 0.20 -48.28 16 16 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 17 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 N -0.59 -22.23 6.04 -179.22 -1.08 -23.31 16 21 H 0.43 13.05 8.43 -92.71 -0.78 12.27 16 22 C 0.02 0.80 6.98 38.86 0.27 1.07 16 23 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 25 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 27 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.04 1.54 7.59 -2.39 -0.02 1.52 16 30 H 0.08 3.95 6.07 -2.39 -0.01 3.94 16 31 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.08 4.08 6.07 -2.39 -0.01 4.06 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -66.09 288.96 4.12 -61.97 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.31 Total: 16.50 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.47 Total: -24.72 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -2.69 Total: -100.35 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.09 4.12 -61.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.808 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds