Wall clock time and date at job start Mon Mar 30 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 C 1.53003 * 109.46973 * 119.99716 * 2 1 3 5 5 C 1.50702 * 109.47069 * 65.00012 * 4 2 1 6 6 N 1.34585 * 126.01768 * 265.02659 * 5 4 2 7 7 H 0.96999 * 125.11952 * 359.92712 * 6 5 4 8 8 N 1.39997 * 109.76948 * 179.97438 * 6 5 4 9 9 C 1.32223 * 108.81441 * 359.97438 * 8 6 5 10 10 C 1.40984 * 134.53296 * 179.97438 * 9 8 6 11 11 C 1.37477 * 120.72303 * 179.97438 * 10 9 8 12 12 C 1.38130 * 122.60144 * 0.02577 * 11 10 9 13 13 C 1.40483 * 121.10468 * 359.97438 * 12 11 10 14 14 C 1.40143 * 120.76602 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99749 * 153.11181 * 14 13 12 16 16 C 1.40066 * 120.00048 * 333.11818 * 14 13 12 17 17 N 1.30787 * 120.00233 * 344.37927 * 16 14 13 18 18 Si 1.86798 * 119.99921 * 164.38298 * 16 14 13 19 19 H 1.48493 * 109.47252 * 90.00170 * 18 16 14 20 20 H 1.48505 * 109.47094 * 209.99924 * 18 16 14 21 21 H 1.48495 * 109.47220 * 329.99555 * 18 16 14 22 22 C 1.37150 * 126.01339 * 84.71034 * 5 4 2 23 23 H 1.09005 * 109.47007 * 300.00006 * 1 2 3 24 24 H 1.08998 * 109.47227 * 59.99885 * 1 2 3 25 25 H 1.08996 * 109.47494 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00145 * 2 1 3 27 27 H 1.09009 * 109.46898 * 59.99672 * 3 2 1 28 28 H 1.08999 * 109.47467 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47135 * 300.00171 * 3 2 1 30 30 H 1.09001 * 109.47150 * 184.99990 * 4 2 1 31 31 H 1.08997 * 109.47058 * 305.00268 * 4 2 1 32 32 H 1.08013 * 119.63836 * 0.02562 * 10 9 8 33 33 H 1.08008 * 118.70209 * 180.02562 * 11 10 9 34 34 H 1.07994 * 119.45071 * 179.97438 * 12 11 10 35 35 H 0.96991 * 120.00546 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 -2.1733 1.1890 6 7 0.5474 -2.7177 1.7533 7 1 -0.1149 -2.2318 2.2691 8 7 0.5098 -4.0911 1.4845 9 6 1.5669 -4.4127 0.7583 10 6 2.0553 -5.6115 0.1999 11 6 3.2210 -5.6231 -0.5288 12 6 3.9697 -4.4843 -0.7533 13 6 3.5692 -3.2395 -0.2399 14 6 4.3340 -2.0884 -0.4724 15 1 3.8607 -1.1177 -0.4781 16 6 5.7122 -2.1970 -0.6975 17 7 6.3390 -3.3044 -0.3953 18 14 6.6550 -0.7600 -1.4292 19 1 7.1539 0.1128 -0.3362 20 1 7.8047 -1.2722 -2.2174 21 1 5.7562 0.0218 -2.3158 22 6 2.3261 -3.1715 0.5443 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.1263 -0.6443 1.2953 31 1 1.6053 -0.2617 2.1370 32 1 1.5072 -6.5308 0.3455 33 1 3.5650 -6.5598 -0.9422 34 1 4.8783 -4.5519 -1.3332 35 1 7.2934 -3.3794 -0.5509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260674504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:08 Heat of formation + Delta-G solvation = 57.454212 kcal Electronic energy + Delta-G solvation = -17643.385363 eV Core-core repulsion = 15027.508374 eV Total energy + Delta-G solvation = -2615.876988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.94505 -36.09183 -35.68873 -33.49635 -30.88835 -29.42278 -28.47211 -26.94012 -25.86112 -24.99829 -22.21298 -20.48771 -19.88463 -18.73075 -16.91763 -16.36433 -15.52855 -15.24462 -14.45872 -14.29424 -14.01021 -13.23275 -13.01009 -12.89353 -12.63167 -12.10890 -11.84201 -11.72680 -11.55244 -11.28423 -11.12713 -10.79777 -10.64449 -10.61368 -10.30231 -10.20827 -10.09778 -9.66201 -9.36675 -8.90235 -8.49820 -7.37109 -6.97400 -6.43789 -4.36304 2.02948 2.87291 2.95049 2.99298 3.46251 3.68833 3.76063 3.83640 4.61627 5.13779 5.16144 5.21027 5.63666 5.65374 5.70084 5.78218 5.82346 5.95012 6.00153 6.15136 6.26608 6.40671 6.50419 6.59105 6.61904 6.65121 6.85613 6.94699 7.08704 7.25435 7.52787 7.78028 8.00531 8.13117 8.29491 8.37078 8.55075 8.72365 8.83099 9.11190 9.92565 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.012041 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.854133 B = 2324.736146 C = 3828.704977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.050 4.050 5 C 0.107 3.893 6 N -0.474 5.474 7 H 0.422 0.578 8 N -0.374 5.374 9 C 0.153 3.847 10 C -0.297 4.297 11 C -0.006 4.006 12 C -0.282 4.282 13 C 0.178 3.822 14 C -0.424 4.424 15 H 0.090 0.910 16 C 0.072 3.928 17 N -0.755 5.755 18 Si 0.906 3.094 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.256 1.256 22 C -0.218 4.218 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 8.749 0.051 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.089 4.089 5 C -0.025 4.025 6 N -0.175 5.175 7 H 0.262 0.738 8 N -0.203 5.203 9 C 0.002 3.998 10 C -0.322 4.322 11 C -0.028 4.028 12 C -0.303 4.303 13 C 0.173 3.827 14 C -0.453 4.453 15 H 0.108 0.892 16 C -0.150 4.150 17 N -0.378 5.378 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.179 1.179 22 C -0.229 4.229 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.548 8.153 0.650 8.916 hybrid contribution 0.869 0.963 -0.285 1.328 sum -2.679 9.116 0.365 9.508 Atomic orbital electron populations 1.21886 0.95856 1.01781 1.01016 1.21115 0.95282 0.95738 0.99083 1.21827 1.01462 0.95770 1.01167 1.20385 1.03168 0.87887 0.97487 1.20622 0.89577 0.94701 0.97638 1.46057 1.19793 1.07621 1.44069 0.73760 1.77503 1.24462 0.89047 1.29246 1.20713 0.90901 0.94779 0.93413 1.18994 1.02821 0.93487 1.16868 1.20284 0.92419 0.96709 0.93364 1.20563 1.04734 0.92114 1.12920 1.17866 0.86380 0.93455 0.85030 1.19710 0.92156 0.95181 1.38210 0.89211 1.26080 0.98513 0.97225 0.93206 1.69860 1.11041 1.26219 1.30644 0.86314 0.79419 0.81213 0.80078 1.19132 1.19735 1.17946 1.20640 1.01530 0.91724 1.08970 0.93284 0.92924 0.92588 0.89661 0.93102 0.92248 0.92851 0.88185 0.92056 0.89467 0.89648 0.86922 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.01 37.16 0.33 -1.65 16 2 C -0.09 -1.38 2.44 -90.62 -0.22 -1.61 16 3 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 4 C -0.05 -0.82 4.44 -27.88 -0.12 -0.95 16 5 C 0.11 2.21 5.60 -81.78 -0.46 1.75 16 6 N -0.47 -9.42 6.82 33.75 0.23 -9.19 16 7 H 0.42 6.62 8.96 -182.68 -1.64 4.98 16 8 N -0.37 -9.02 12.72 33.23 0.42 -8.59 16 9 C 0.15 3.98 7.48 -83.08 -0.62 3.36 16 10 C -0.30 -7.56 10.09 -38.82 -0.39 -7.95 16 11 C -0.01 -0.14 9.86 -39.90 -0.39 -0.53 16 12 C -0.28 -7.37 8.65 -38.78 -0.34 -7.71 16 13 C 0.18 4.60 5.70 -104.73 -0.60 4.00 16 14 C -0.42 -10.13 8.18 -38.18 -0.31 -10.44 16 15 H 0.09 1.95 4.89 -52.49 -0.26 1.70 16 16 C 0.07 1.66 5.17 -17.31 -0.09 1.57 16 17 N -0.76 -18.20 10.99 55.55 0.61 -17.58 16 18 Si 0.91 16.77 29.59 -169.99 -5.03 11.74 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 22 C -0.22 -5.42 6.31 -103.10 -0.65 -6.07 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.86 7.05 -51.93 -0.37 0.50 16 26 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 27 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.77 6.56 -51.93 -0.34 1.43 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.11 2.98 6.23 -52.49 -0.33 2.66 16 35 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 LS Contribution 287.84 15.07 4.34 4.34 Total: -1.00 -28.74 287.84 -8.77 -37.51 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.82 Total: 9.46 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -3.52 Total: -27.68 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 1.26 Total: -35.37 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.74 -8.77 -37.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.965 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds