Wall clock time and date at job start Mon Mar 30 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 C 1.53003 * 109.46973 * 119.99716 * 2 1 3 5 5 C 1.50702 * 109.47069 * 65.00012 * 4 2 1 6 6 N 1.34585 * 126.01768 * 265.02659 * 5 4 2 7 7 H 0.96999 * 125.11952 * 359.92712 * 6 5 4 8 8 N 1.39997 * 109.76948 * 179.97438 * 6 5 4 9 9 C 1.32223 * 108.81441 * 359.97438 * 8 6 5 10 10 C 1.40984 * 134.53296 * 179.97438 * 9 8 6 11 11 C 1.37477 * 120.72303 * 179.97438 * 10 9 8 12 12 C 1.38130 * 122.60144 * 0.02577 * 11 10 9 13 13 C 1.40483 * 121.10468 * 359.97438 * 12 11 10 14 14 C 1.40143 * 120.76602 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99749 * 153.11181 * 14 13 12 16 16 C 1.40066 * 120.00048 * 333.11818 * 14 13 12 17 17 N 1.30787 * 120.00233 * 344.37927 * 16 14 13 18 18 Si 1.86798 * 119.99921 * 164.38298 * 16 14 13 19 19 H 1.48493 * 109.47252 * 90.00170 * 18 16 14 20 20 H 1.48505 * 109.47094 * 209.99924 * 18 16 14 21 21 H 1.48495 * 109.47220 * 329.99555 * 18 16 14 22 22 C 1.37150 * 126.01339 * 84.71034 * 5 4 2 23 23 H 1.09005 * 109.47007 * 300.00006 * 1 2 3 24 24 H 1.08998 * 109.47227 * 59.99885 * 1 2 3 25 25 H 1.08996 * 109.47494 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00145 * 2 1 3 27 27 H 1.09009 * 109.46898 * 59.99672 * 3 2 1 28 28 H 1.08999 * 109.47467 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47135 * 300.00171 * 3 2 1 30 30 H 1.09001 * 109.47150 * 184.99990 * 4 2 1 31 31 H 1.08997 * 109.47058 * 305.00268 * 4 2 1 32 32 H 1.08013 * 119.63836 * 0.02562 * 10 9 8 33 33 H 1.08008 * 118.70209 * 180.02562 * 11 10 9 34 34 H 1.07994 * 119.45071 * 179.97438 * 12 11 10 35 35 H 0.96991 * 120.00546 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 -2.1733 1.1890 6 7 0.5474 -2.7177 1.7533 7 1 -0.1149 -2.2318 2.2691 8 7 0.5098 -4.0911 1.4845 9 6 1.5669 -4.4127 0.7583 10 6 2.0553 -5.6115 0.1999 11 6 3.2210 -5.6231 -0.5288 12 6 3.9697 -4.4843 -0.7533 13 6 3.5692 -3.2395 -0.2399 14 6 4.3340 -2.0884 -0.4724 15 1 3.8607 -1.1177 -0.4781 16 6 5.7122 -2.1970 -0.6975 17 7 6.3390 -3.3044 -0.3953 18 14 6.6550 -0.7600 -1.4292 19 1 7.1539 0.1128 -0.3362 20 1 7.8047 -1.2722 -2.2174 21 1 5.7562 0.0218 -2.3158 22 6 2.3261 -3.1715 0.5443 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.1263 -0.6443 1.2953 31 1 1.6053 -0.2617 2.1370 32 1 1.5072 -6.5308 0.3455 33 1 3.5650 -6.5598 -0.9422 34 1 4.8783 -4.5519 -1.3332 35 1 7.2934 -3.3794 -0.5509 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260674504.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:07 Heat of formation + Delta-G solvation = 41.363849 kcal Electronic energy + Delta-G solvation = -17644.083093 eV Core-core repulsion = 15027.508374 eV Total energy + Delta-G solvation = -2616.574719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68652 -37.62804 -37.26406 -35.28951 -32.58733 -31.25551 -30.13874 -27.97308 -27.48763 -26.75713 -24.01278 -22.23701 -21.27606 -20.39322 -18.76909 -17.97664 -17.28058 -16.94308 -15.96560 -15.76745 -15.44579 -14.72755 -14.64826 -14.47922 -14.22562 -13.45978 -13.20410 -13.02983 -12.98740 -12.83485 -12.60464 -12.25613 -12.13255 -12.01289 -11.82610 -11.72587 -11.49948 -11.46487 -11.10366 -10.73226 -10.30619 -9.23086 -8.74361 -8.29237 -6.26480 0.25373 1.38349 1.44265 1.57586 1.59669 1.89874 2.17733 2.24825 2.79137 3.70888 3.79829 3.93453 4.02738 4.09659 4.39355 4.47352 4.71637 4.77353 4.82158 4.86419 4.98411 5.03071 5.06149 5.09084 5.19623 5.24283 5.32412 5.40100 5.49065 5.56410 5.66920 5.89954 6.12422 6.33280 6.37331 6.65438 6.75088 6.84380 6.94714 7.25269 8.19315 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.012041 C = 0.007311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.854133 B = 2324.736146 C = 3828.704977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.049 4.049 5 C 0.136 3.864 6 N -0.454 5.454 7 H 0.442 0.558 8 N -0.397 5.397 9 C 0.126 3.874 10 C -0.325 4.325 11 C -0.011 4.011 12 C -0.313 4.313 13 C 0.158 3.842 14 C -0.433 4.433 15 H 0.108 0.892 16 C 0.033 3.967 17 N -0.786 5.786 18 Si 0.981 3.019 19 H -0.253 1.253 20 H -0.270 1.270 21 H -0.247 1.247 22 C -0.266 4.266 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 12.203 0.429 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.088 4.088 5 C 0.001 3.999 6 N -0.158 5.158 7 H 0.287 0.713 8 N -0.226 5.226 9 C -0.025 4.025 10 C -0.349 4.349 11 C -0.033 4.033 12 C -0.334 4.334 13 C 0.153 3.847 14 C -0.460 4.460 15 H 0.126 0.874 16 C -0.188 4.188 17 N -0.409 5.409 18 Si 0.800 3.200 19 H -0.177 1.177 20 H -0.194 1.194 21 H -0.170 1.170 22 C -0.276 4.276 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.541 11.593 1.050 12.167 hybrid contribution 0.862 -0.043 -0.362 0.936 sum -2.679 11.550 0.688 11.876 Atomic orbital electron populations 1.21860 0.94588 1.00690 1.03036 1.21060 0.96322 0.96971 0.96567 1.21793 1.01217 0.93769 1.02950 1.20576 1.02850 0.85200 1.00157 1.21159 0.88114 0.96014 0.94599 1.45999 1.19958 1.06519 1.43280 0.71260 1.77391 1.24292 0.91192 1.29762 1.20993 0.91779 0.95587 0.94108 1.19156 1.03561 0.93991 1.18237 1.20458 0.92277 0.97290 0.93272 1.20600 1.05008 0.93253 1.14570 1.18235 0.87276 0.94000 0.85209 1.20098 0.92887 0.95370 1.37686 0.87414 1.27070 0.99029 1.00006 0.92656 1.69925 1.11982 1.28345 1.30599 0.85193 0.77822 0.77490 0.79468 1.17709 1.19436 1.17047 1.20918 1.02526 0.92788 1.11365 0.90545 0.91729 0.95159 0.92984 0.90795 0.92664 0.91654 0.89203 0.88167 0.89054 0.87747 0.88128 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.01 71.98 0.65 -2.78 16 2 C -0.09 -2.43 2.44 -10.79 -0.03 -2.46 16 3 C -0.14 -2.89 9.19 71.98 0.66 -2.22 16 4 C -0.05 -1.47 4.44 29.85 0.13 -1.34 16 5 C 0.14 5.50 5.60 41.88 0.23 5.73 16 6 N -0.45 -17.56 6.82 -47.15 -0.32 -17.88 16 7 H 0.44 12.85 8.96 -213.39 -1.91 10.93 16 8 N -0.40 -19.35 12.72 -48.78 -0.62 -19.97 16 9 C 0.13 6.76 7.48 42.07 0.31 7.08 16 10 C -0.33 -17.32 10.09 22.76 0.23 -17.09 16 11 C -0.01 -0.58 9.86 22.06 0.22 -0.36 16 12 C -0.31 -17.14 8.65 22.79 0.20 -16.94 16 13 C 0.16 8.42 5.70 -19.93 -0.11 8.31 16 14 C -0.43 -20.73 8.18 23.18 0.19 -20.54 16 15 H 0.11 4.61 4.89 -2.91 -0.01 4.59 16 16 C 0.03 1.49 5.17 85.29 0.44 1.93 16 17 N -0.79 -38.24 10.99 21.85 0.24 -38.00 16 18 Si 0.98 32.98 29.59 68.60 2.03 35.01 16 19 H -0.25 -7.97 7.11 99.48 0.71 -7.27 16 20 H -0.27 -8.91 7.11 99.48 0.71 -8.20 16 21 H -0.25 -7.94 7.11 99.48 0.71 -7.24 16 22 C -0.27 -13.49 6.31 -18.88 -0.12 -13.61 16 23 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 0.86 7.05 -2.39 -0.02 0.85 16 26 H 0.05 1.76 7.32 -2.39 -0.02 1.74 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 2.97 6.56 -2.39 -0.02 2.96 16 31 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 4.58 8.06 -2.90 -0.02 4.56 16 33 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.10 5.60 6.23 -2.91 -0.02 5.58 16 35 H 0.30 12.81 8.29 -92.72 -0.77 12.04 16 Total: -1.00 -64.81 287.84 3.53 -61.28 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.81 Total: 33.87 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 3.01 Total: -54.30 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -0.70 Total: -75.85 kcal Atomic # 14 Polarization: 32.98 SS G_CDS: 2.03 Total: 35.01 kcal Total: -64.81 3.53 -61.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260674504.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.640 kcal (2) G-P(sol) polarization free energy of solvation -64.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds