Wall clock time and date at job start Mon Mar 30 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 C 1.53002 * 109.46827 * 239.99943 * 2 1 3 5 5 C 1.50705 * 109.47236 * 120.00194 * 2 1 3 6 6 N 1.34009 * 126.13716 * 0.03965 * 5 2 1 7 7 H 0.97003 * 124.99620 * 359.94048 * 6 5 2 8 8 N 1.39885 * 110.01035 * 179.97438 * 6 5 2 9 9 C 1.31773 * 109.18158 * 0.02562 * 8 6 5 10 10 C 1.46009 * 134.01883 * 180.02562 * 9 8 6 11 11 C 1.35048 * 119.62011 * 179.97438 * 10 9 8 12 12 C 1.45973 * 120.92854 * 0.02562 * 11 10 9 13 13 C 1.41002 * 119.52037 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00152 * 205.03355 * 13 12 11 15 15 C 1.39775 * 119.99765 * 25.03078 * 13 12 11 16 16 N 1.30945 * 120.00114 * 18.16730 * 15 13 12 17 17 Si 1.86797 * 119.99938 * 198.16858 * 15 13 12 18 18 H 1.48506 * 109.47279 * 60.00101 * 17 15 13 19 19 H 1.48501 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47123 * 299.99970 * 17 15 13 21 21 C 1.39786 * 120.96411 * 0.02562 * 12 11 10 22 22 C 1.39020 * 126.13760 * 179.97438 * 5 2 1 23 23 H 1.09003 * 109.46728 * 300.00147 * 1 2 3 24 24 H 1.09002 * 109.47021 * 59.99866 * 1 2 3 25 25 H 1.09003 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47477 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47152 * 300.00054 * 3 2 1 28 28 H 1.08996 * 109.46871 * 59.99707 * 3 2 1 29 29 H 1.09003 * 109.47016 * 299.99793 * 4 2 1 30 30 H 1.08993 * 109.47147 * 60.00026 * 4 2 1 31 31 H 1.09003 * 109.46838 * 179.97438 * 4 2 1 32 32 H 1.08004 * 120.19126 * 0.02562 * 10 9 8 33 33 H 1.07996 * 119.54142 * 180.28224 * 11 10 9 34 34 H 0.97000 * 120.00355 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.06386 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2305 6 7 1.2755 -1.2641 2.1878 7 1 0.3055 -1.2690 2.1967 8 7 2.0898 -1.8331 3.1726 9 6 3.3538 -1.6459 2.8506 10 6 4.6238 -2.0063 3.4744 11 6 5.7836 -1.6596 2.8757 12 6 5.7864 -0.9282 1.6124 13 6 7.0148 -0.5807 1.0136 14 1 7.0689 0.2645 0.3435 15 6 8.1624 -1.3303 1.2872 16 7 8.0535 -2.5335 1.7922 17 14 9.8513 -0.6155 0.9325 18 1 10.0384 0.6282 1.7222 19 1 10.8954 -1.6026 1.3078 20 1 9.9629 -0.3041 -0.5152 21 6 4.5892 -0.5663 0.9882 22 6 3.3642 -0.9103 1.5755 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9562 0.8899 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 4.6356 -2.5478 4.4088 33 1 6.7222 -1.9308 3.3359 34 1 8.8499 -3.0539 1.9818 35 1 4.6083 -0.0256 0.0535 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260682500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:11 Heat of formation + Delta-G solvation = 63.444289 kcal Electronic energy + Delta-G solvation = -17385.194823 eV Core-core repulsion = 14769.577584 eV Total energy + Delta-G solvation = -2615.617239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14447 -36.37615 -35.67764 -33.10281 -30.29409 -29.54141 -28.11197 -26.88303 -26.86133 -24.96808 -22.31828 -20.90711 -20.02732 -18.33735 -17.16644 -16.57733 -15.31581 -15.08979 -14.26536 -14.17847 -13.59343 -13.28609 -13.24255 -12.90676 -12.30307 -12.15680 -11.94474 -11.85291 -11.41468 -11.31838 -11.12784 -10.96420 -10.76656 -10.70070 -10.61719 -10.17637 -9.99560 -9.87337 -9.23419 -8.93508 -8.66276 -7.48824 -6.90293 -6.47647 -4.19053 1.96251 2.92415 3.05731 3.08950 3.35829 3.65972 3.69595 3.90855 4.56376 4.96579 5.09449 5.19375 5.57972 5.61557 5.67474 5.72021 5.86190 5.99555 6.00842 6.09123 6.22813 6.26327 6.36572 6.52648 6.62907 6.67974 6.85571 6.93648 7.09756 7.15891 7.56847 7.57681 7.91518 7.93503 8.19105 8.23155 8.47217 8.69017 8.91578 8.97764 10.13231 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.006891 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.675831 B = 4062.460666 C = 4744.867139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.016 3.984 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.011 3.989 6 N -0.457 5.457 7 H 0.422 0.578 8 N -0.323 5.323 9 C 0.065 3.935 10 C -0.136 4.136 11 C -0.041 4.041 12 C 0.097 3.903 13 C -0.449 4.449 14 H 0.080 0.920 15 C 0.073 3.927 16 N -0.800 5.800 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.265 4.265 22 C -0.097 4.097 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.283 0.717 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 3.827 -3.139 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.119 4.119 6 N -0.163 5.163 7 H 0.264 0.736 8 N -0.150 5.150 9 C -0.092 4.092 10 C -0.157 4.157 11 C -0.064 4.064 12 C 0.094 3.906 13 C -0.479 4.479 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.426 5.426 17 Si 0.734 3.266 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.288 4.288 22 C -0.106 4.106 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.094 0.906 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.688 3.100 -2.190 8.574 hybrid contribution 0.754 0.427 -0.681 1.102 sum -6.935 3.526 -2.871 8.293 Atomic orbital electron populations 1.21958 0.95296 1.01516 1.01959 1.18878 0.93911 0.94783 0.91038 1.21869 1.02901 0.94001 1.00715 1.21880 1.02993 0.99503 0.95184 1.20529 0.90992 1.06057 0.94325 1.45588 1.08041 1.45365 1.17258 0.73604 1.77042 1.01861 1.24261 1.11881 1.21976 0.91386 0.99876 0.95938 1.20594 0.88394 1.06356 1.00332 1.22368 0.96378 0.93476 0.94137 1.18240 0.92491 0.89927 0.89946 1.19467 0.92156 1.12102 1.24146 0.90164 1.25939 1.01613 0.93858 0.92977 1.69837 1.32151 1.07828 1.32771 0.86345 0.80521 0.79811 0.79967 1.18792 1.20359 1.18969 1.19733 0.88941 1.17984 1.02094 1.19026 0.91846 1.03701 0.96065 0.92807 0.91904 0.92793 0.90991 0.92911 0.93079 0.93056 0.92919 0.90907 0.87686 0.85177 0.90633 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 7.50 37.16 0.28 -1.51 16 2 C 0.02 0.25 0.94 -155.66 -0.15 0.10 16 3 C -0.14 -2.02 8.36 37.16 0.31 -1.71 16 4 C -0.14 -2.08 8.36 37.16 0.31 -1.77 16 5 C 0.01 0.22 5.67 -81.35 -0.46 -0.25 16 6 N -0.46 -8.69 6.97 34.00 0.24 -8.45 16 7 H 0.42 6.37 7.89 -182.76 -1.44 4.93 16 8 N -0.32 -7.32 12.67 34.26 0.43 -6.89 16 9 C 0.07 1.59 7.66 -81.13 -0.62 0.97 16 10 C -0.14 -3.24 10.26 -37.60 -0.39 -3.63 16 11 C -0.04 -1.03 8.70 -37.62 -0.33 -1.36 16 12 C 0.10 2.53 5.68 -105.17 -0.60 1.93 16 13 C -0.45 -11.47 8.98 -37.96 -0.34 -11.81 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 15 C 0.07 1.76 5.12 -17.36 -0.09 1.67 16 16 N -0.80 -19.82 10.93 55.54 0.61 -19.21 16 17 Si 0.91 18.01 29.60 -169.99 -5.03 12.98 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 21 C -0.27 -6.52 8.68 -38.29 -0.33 -6.85 16 22 C -0.10 -2.29 5.87 -105.25 -0.62 -2.91 16 23 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.62 8.05 -51.93 -0.42 0.20 16 26 H 0.07 1.21 6.49 -51.93 -0.34 0.87 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.26 6.51 -51.93 -0.34 0.92 16 32 H 0.11 2.26 8.06 -52.48 -0.42 1.83 16 33 H 0.13 3.23 6.19 -52.49 -0.33 2.91 16 34 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 35 H 0.09 2.16 6.17 -52.48 -0.32 1.84 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -28.18 287.59 -8.13 -36.31 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.69 Total: 8.06 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.02 Total: -27.13 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 1.28 Total: -34.56 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.18 -8.13 -36.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.752 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds