Wall clock time and date at job start Mon Mar 30 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47382 * 2 1 4 4 C 1.53002 * 109.46827 * 239.99943 * 2 1 3 5 5 C 1.50705 * 109.47236 * 120.00194 * 2 1 3 6 6 N 1.34009 * 126.13716 * 0.03965 * 5 2 1 7 7 H 0.97003 * 124.99620 * 359.94048 * 6 5 2 8 8 N 1.39885 * 110.01035 * 179.97438 * 6 5 2 9 9 C 1.31773 * 109.18158 * 0.02562 * 8 6 5 10 10 C 1.46009 * 134.01883 * 180.02562 * 9 8 6 11 11 C 1.35048 * 119.62011 * 179.97438 * 10 9 8 12 12 C 1.45973 * 120.92854 * 0.02562 * 11 10 9 13 13 C 1.41002 * 119.52037 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00152 * 205.03355 * 13 12 11 15 15 C 1.39775 * 119.99765 * 25.03078 * 13 12 11 16 16 N 1.30945 * 120.00114 * 18.16730 * 15 13 12 17 17 Si 1.86797 * 119.99938 * 198.16858 * 15 13 12 18 18 H 1.48506 * 109.47279 * 60.00101 * 17 15 13 19 19 H 1.48501 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47123 * 299.99970 * 17 15 13 21 21 C 1.39786 * 120.96411 * 0.02562 * 12 11 10 22 22 C 1.39020 * 126.13760 * 179.97438 * 5 2 1 23 23 H 1.09003 * 109.46728 * 300.00147 * 1 2 3 24 24 H 1.09002 * 109.47021 * 59.99866 * 1 2 3 25 25 H 1.09003 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47477 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47152 * 300.00054 * 3 2 1 28 28 H 1.08996 * 109.46871 * 59.99707 * 3 2 1 29 29 H 1.09003 * 109.47016 * 299.99793 * 4 2 1 30 30 H 1.08993 * 109.47147 * 60.00026 * 4 2 1 31 31 H 1.09003 * 109.46838 * 179.97438 * 4 2 1 32 32 H 1.08004 * 120.19126 * 0.02562 * 10 9 8 33 33 H 1.07996 * 119.54142 * 180.28224 * 11 10 9 34 34 H 0.97000 * 120.00355 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.06386 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7105 1.2305 6 7 1.2755 -1.2641 2.1878 7 1 0.3055 -1.2690 2.1967 8 7 2.0898 -1.8331 3.1726 9 6 3.3538 -1.6459 2.8506 10 6 4.6238 -2.0063 3.4744 11 6 5.7836 -1.6596 2.8757 12 6 5.7864 -0.9282 1.6124 13 6 7.0148 -0.5807 1.0136 14 1 7.0689 0.2645 0.3435 15 6 8.1624 -1.3303 1.2872 16 7 8.0535 -2.5335 1.7922 17 14 9.8513 -0.6155 0.9325 18 1 10.0384 0.6282 1.7222 19 1 10.8954 -1.6026 1.3078 20 1 9.9629 -0.3041 -0.5152 21 6 4.5892 -0.5663 0.9882 22 6 3.3642 -0.9103 1.5755 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9562 0.8899 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 4.6356 -2.5478 4.4088 33 1 6.7222 -1.9308 3.3359 34 1 8.8499 -3.0539 1.9818 35 1 4.6083 -0.0256 0.0535 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260682500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:10 Heat of formation + Delta-G solvation = 47.850491 kcal Electronic energy + Delta-G solvation = -17385.871021 eV Core-core repulsion = 14769.577584 eV Total energy + Delta-G solvation = -2616.293437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84657 -37.92949 -37.27722 -34.91275 -32.07973 -31.29355 -29.88976 -28.08219 -27.95866 -26.77178 -24.10815 -22.54751 -21.75189 -20.01498 -18.92339 -18.19354 -17.11347 -16.72485 -15.73128 -15.71034 -14.97018 -14.91264 -14.66360 -14.65165 -13.95685 -13.71419 -13.13756 -13.07534 -12.98262 -12.77201 -12.62412 -12.56234 -12.35680 -12.01989 -11.91049 -11.81254 -11.69751 -11.52545 -11.00884 -10.72889 -10.45303 -9.30813 -8.70348 -8.30510 -6.08309 0.19191 1.21825 1.43748 1.54391 1.62434 1.85037 2.12001 2.25696 2.73046 3.63566 3.68637 3.81254 3.95409 4.09367 4.25759 4.49494 4.67347 4.73501 4.80308 4.89668 4.89894 5.01099 5.04942 5.05841 5.12360 5.20804 5.28642 5.32931 5.47035 5.51122 5.70984 5.76068 6.03264 6.08813 6.30803 6.58658 6.65924 6.88227 7.03930 7.13351 8.37364 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.006891 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.675831 B = 4062.460666 C = 4744.867139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.011 3.989 3 C -0.135 4.135 4 C -0.136 4.136 5 C 0.052 3.948 6 N -0.433 5.433 7 H 0.444 0.556 8 N -0.342 5.342 9 C 0.036 3.964 10 C -0.140 4.140 11 C -0.057 4.057 12 C 0.060 3.940 13 C -0.486 4.486 14 H 0.077 0.923 15 C 0.036 3.964 16 N -0.833 5.833 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.261 1.261 21 C -0.256 4.256 22 C -0.143 4.143 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.290 0.710 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 4.810 -4.382 11.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 C -0.193 4.193 4 C -0.194 4.194 5 C -0.082 4.082 6 N -0.140 5.140 7 H 0.290 0.710 8 N -0.171 5.171 9 C -0.118 4.118 10 C -0.161 4.161 11 C -0.079 4.079 12 C 0.057 3.943 13 C -0.516 4.516 14 H 0.095 0.905 15 C -0.178 4.178 16 N -0.459 5.459 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.185 1.185 21 C -0.278 4.278 22 C -0.152 4.152 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.680 4.067 -3.407 11.038 hybrid contribution 1.043 0.156 -0.365 1.116 sum -8.637 4.223 -3.772 10.328 Atomic orbital electron populations 1.21959 0.91729 1.02707 1.03969 1.19175 0.96761 0.94508 0.88679 1.21856 1.01143 0.93766 1.02528 1.21867 1.01089 0.99937 0.96495 1.21304 0.89808 1.02513 0.94552 1.45705 1.09151 1.43092 1.16008 0.71032 1.77003 1.01365 1.25654 1.13101 1.22158 0.92012 1.00897 0.96745 1.20794 0.88365 1.06078 1.00844 1.22299 0.96537 0.94702 0.94351 1.18573 0.93378 0.91481 0.90904 1.19625 0.93254 1.13014 1.25702 0.90534 1.26706 1.04913 0.93755 0.92387 1.69882 1.33439 1.08851 1.33760 0.85270 0.75741 0.79042 0.79791 1.18507 1.19303 1.18536 1.19873 0.89380 1.16806 1.01765 1.19305 0.93206 1.05865 0.96814 0.91865 0.89046 0.92046 0.93817 0.89405 0.93003 0.93277 0.89347 0.93938 0.86033 0.85835 0.89986 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 7.50 71.98 0.54 -2.22 16 2 C 0.01 0.30 0.94 -52.93 -0.05 0.25 16 3 C -0.14 -3.61 8.36 71.98 0.60 -3.01 16 4 C -0.14 -3.75 8.36 71.98 0.60 -3.15 16 5 C 0.05 1.95 5.67 42.42 0.24 2.19 16 6 N -0.43 -15.48 6.97 -46.34 -0.32 -15.80 16 7 H 0.44 11.80 7.89 -213.46 -1.68 10.12 16 8 N -0.34 -15.27 12.67 -45.53 -0.58 -15.84 16 9 C 0.04 1.80 7.66 43.53 0.33 2.13 16 10 C -0.14 -6.93 10.26 23.55 0.24 -6.69 16 11 C -0.06 -2.99 8.70 23.54 0.20 -2.78 16 12 C 0.06 3.26 5.68 -20.22 -0.11 3.14 16 13 C -0.49 -26.00 8.98 23.32 0.21 -25.79 16 14 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 15 C 0.04 1.80 5.12 85.20 0.44 2.24 16 16 N -0.83 -42.75 10.93 21.80 0.24 -42.52 16 17 Si 0.98 37.61 29.60 68.60 2.03 39.64 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 C -0.26 -13.05 8.68 23.11 0.20 -12.85 16 22 C -0.14 -6.77 5.87 -20.27 -0.12 -6.89 16 23 H 0.06 1.10 8.05 -2.39 -0.02 1.08 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.09 8.05 -2.39 -0.02 1.07 16 26 H 0.04 1.42 6.49 -2.39 -0.02 1.40 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.43 6.51 -2.39 -0.02 1.42 16 32 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 33 H 0.12 6.52 6.19 -2.91 -0.02 6.50 16 34 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 35 H 0.09 4.59 6.17 -2.91 -0.02 4.57 16 Total: -1.00 -63.57 287.59 4.11 -59.45 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.58 Total: 28.49 kcal Atomic # 6 Polarization: -56.75 SS G_CDS: 3.33 Total: -53.42 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -0.66 Total: -74.16 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -63.57 4.11 -59.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.304 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds